Wall clock time and date at job start Fri Apr 10 2020 20:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35574 * 116.99755 * 2 1 4 4 C 1.38821 * 119.99484 * 0.25143 * 3 2 1 5 5 C 1.37736 * 120.25107 * 180.25760 * 4 3 2 6 6 C 1.39985 * 120.24208 * 359.74490 * 5 4 3 7 7 C 1.47515 * 120.00832 * 180.02562 * 6 5 4 8 8 O 1.21500 * 119.99873 * 179.97438 * 7 6 5 9 9 O 1.34739 * 120.00053 * 359.97438 * 7 6 5 10 10 C 1.39404 * 119.98510 * 0.02562 * 6 5 4 11 11 C 1.39300 * 119.74541 * 359.97438 * 10 6 5 12 12 C 1.47701 * 120.12048 * 179.97438 * 11 10 6 13 13 C 1.39743 * 120.65456 * 64.98048 * 12 11 10 14 14 C 1.38343 * 118.47627 * 180.02562 * 13 12 11 15 15 C 1.39077 * 119.73440 * 0.02562 * 14 13 12 16 16 N 1.31268 * 121.35206 * 359.97438 * 15 14 13 17 17 C 1.33715 * 121.63951 * 359.97438 * 16 15 14 18 18 C 1.40764 * 119.94261 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99382 * 175.06858 * 18 17 16 20 20 C 1.40136 * 120.00337 * 355.06773 * 18 17 16 21 21 N 1.30701 * 120.00165 * 6.44323 * 20 18 17 22 22 Si 1.86799 * 119.99924 * 186.43925 * 20 18 17 23 23 H 1.48498 * 109.47066 * 94.98579 * 22 20 18 24 24 H 1.48504 * 109.47002 * 214.98470 * 22 20 18 25 25 H 1.48506 * 109.47304 * 334.98432 * 22 20 18 26 26 H 1.09005 * 109.47126 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47156 * 299.99748 * 1 2 3 28 28 H 1.08995 * 109.47120 * 60.00580 * 1 2 3 29 29 H 1.07994 * 119.87121 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.87607 * 179.72359 * 5 4 3 31 31 H 0.96698 * 117.00263 * 179.97438 * 9 7 6 32 32 H 1.07997 * 120.12866 * 180.02562 * 10 6 5 33 33 H 1.08004 * 120.76019 * 0.04506 * 13 12 11 34 34 H 1.07999 * 120.13619 * 180.02562 * 14 13 12 35 35 H 1.08006 * 119.32806 * 180.25285 * 15 14 13 36 36 H 0.97002 * 120.00245 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2080 0.0000 4 6 1.2882 2.3721 0.0053 5 6 1.9080 3.6022 0.0000 6 6 3.3052 3.6877 -0.0054 7 6 3.9635 5.0078 -0.0105 8 8 5.1763 5.0818 -0.0148 9 8 3.2200 6.1314 -0.0106 10 6 4.0743 2.5250 -0.0060 11 6 3.4470 1.2813 -0.0006 12 6 4.2538 0.0442 -0.0017 13 6 5.0738 -0.2726 1.0847 14 6 5.8105 -1.4426 1.0359 15 6 5.7210 -2.2681 -0.0798 16 7 4.9479 -1.9621 -1.0956 17 6 4.2118 -0.8459 -1.1055 18 6 3.3945 -0.5530 -2.2136 19 1 2.7398 0.3056 -2.1896 20 6 3.4305 -1.3755 -3.3476 21 7 4.1255 -2.4823 -3.3305 22 14 2.4850 -0.8900 -4.8838 23 1 3.3896 -0.1684 -5.8144 24 1 1.9613 -2.1101 -5.5489 25 1 1.3523 -0.0056 -4.5091 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.2099 2.3131 0.0090 30 1 1.3137 4.5041 -0.0004 31 1 3.6962 6.9730 -0.0136 32 1 5.1524 2.5883 -0.0097 33 1 5.1308 0.3807 1.9428 34 1 6.4527 -1.7138 1.8608 35 1 6.2959 -3.1819 -0.1092 36 1 4.1506 -3.0514 -4.1156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242392425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:25 Heat of formation + Delta-G solvation = -67.712842 kcal Electronic energy + Delta-G solvation = -23769.422745 eV Core-core repulsion = 20183.894257 eV Total energy + Delta-G solvation = -3585.528488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.099 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.27879 -39.46480 -37.96146 -36.74630 -35.87311 -33.66878 -32.35966 -30.33572 -30.14467 -28.68946 -27.17109 -25.66140 -23.83344 -22.99350 -21.39731 -20.89280 -20.21027 -17.83214 -17.71449 -17.46115 -16.79710 -15.88054 -15.58564 -15.38773 -15.14358 -14.68357 -14.35036 -14.13988 -13.64773 -13.48738 -13.30779 -12.71034 -12.46405 -12.24517 -12.04563 -11.83650 -11.53393 -11.46884 -11.26236 -11.17302 -11.04428 -10.77997 -10.56046 -10.44698 -10.33025 -9.91158 -9.40611 -8.70183 -8.21962 -7.91271 -7.57901 -7.32246 -6.45883 -4.52635 1.11085 1.67134 2.66033 2.83101 3.00274 3.04635 3.07193 3.21199 3.23352 3.68957 3.89794 4.15190 4.71902 5.00805 5.10615 5.29577 5.38476 5.42317 5.54131 5.73606 5.75712 5.91346 5.99819 6.10940 6.17604 6.40095 6.42430 6.51747 6.60868 6.68668 6.71777 6.89822 7.06086 7.09401 7.30943 7.55952 7.72031 7.84642 8.03281 8.07156 8.21893 8.61198 8.92210 10.07635 10.25491 Molecular weight = 299.10amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.006096 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.133895 B = 4592.226032 C = 5194.423239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.277 6.277 3 C 0.179 3.821 4 C -0.233 4.233 5 C -0.039 4.039 6 C -0.178 4.178 7 C 0.532 3.468 8 O -0.523 6.523 9 O -0.518 6.518 10 C -0.019 4.019 11 C -0.017 4.017 12 C -0.230 4.230 13 C -0.032 4.032 14 C -0.322 4.322 15 C 0.133 3.867 16 N -0.483 5.483 17 C 0.278 3.722 18 C -0.406 4.406 19 H 0.082 0.918 20 C 0.070 3.930 21 N -0.708 5.708 22 Si 0.901 3.099 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.261 1.261 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.408 0.592 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.377 8.661 4.098 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.187 6.187 3 C 0.131 3.869 4 C -0.252 4.252 5 C -0.057 4.057 6 C -0.179 4.179 7 C 0.378 3.622 8 O -0.413 6.413 9 O -0.329 6.329 10 C -0.038 4.038 11 C -0.019 4.019 12 C -0.235 4.235 13 C -0.056 4.056 14 C -0.345 4.345 15 C -0.036 4.036 16 N -0.194 5.194 17 C 0.155 3.845 18 C -0.436 4.436 19 H 0.100 0.900 20 C -0.157 4.157 21 N -0.329 5.329 22 Si 0.725 3.275 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.185 1.185 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.265 0.735 32 H 0.156 0.844 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.224 7.354 3.193 10.792 hybrid contribution -0.265 1.457 0.061 1.482 sum -7.489 8.811 3.254 12.013 Atomic orbital electron populations 1.23074 0.79554 1.03867 1.00661 1.86317 1.20072 1.25998 1.86321 1.19646 0.92064 0.84198 0.91004 1.21073 0.99966 0.92032 1.12118 1.21008 0.92897 0.97314 0.94480 1.18708 0.93738 0.89423 1.16060 1.20950 0.84906 0.84679 0.71665 1.90873 1.15384 1.87836 1.47192 1.84577 1.44668 1.17344 1.86350 1.21258 1.00176 0.89063 0.93272 1.17958 0.89050 0.93251 1.01596 1.19016 1.07243 0.97732 0.99468 1.20849 0.93876 0.95362 0.95517 1.21173 1.10651 1.00587 1.02083 1.22586 0.94481 0.96784 0.89733 1.68758 1.08401 1.17724 1.24543 1.18429 0.89641 0.86288 0.90166 1.19488 1.18196 1.08976 0.96936 0.89962 1.26109 0.95028 0.94222 1.00309 1.70116 1.27109 1.07411 1.28253 0.86412 0.80553 0.79208 0.81356 1.19295 1.19958 1.18484 0.88396 0.93166 0.92766 0.85196 0.85093 0.73469 0.84393 0.88680 0.88746 0.86468 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 101.05 0.99 1.31 16 2 O -0.28 -5.35 8.92 -18.42 -0.16 -5.52 16 3 C 0.18 3.39 5.41 -38.54 -0.21 3.18 16 4 C -0.23 -3.57 9.01 -39.55 -0.36 -3.93 16 5 C -0.04 -0.57 9.60 -39.11 -0.38 -0.94 16 6 C -0.18 -2.99 5.87 -105.03 -0.62 -3.61 16 7 C 0.53 8.34 8.26 34.51 0.29 8.62 16 8 O -0.52 -9.64 17.12 -19.27 -0.33 -9.97 16 9 O -0.52 -5.93 12.66 -40.60 -0.51 -6.45 16 10 C -0.02 -0.37 9.29 -38.75 -0.36 -0.73 16 11 C -0.02 -0.36 4.52 -104.81 -0.47 -0.83 16 12 C -0.23 -5.52 4.99 -104.09 -0.52 -6.04 16 13 C -0.03 -0.72 9.88 -38.98 -0.39 -1.10 16 14 C -0.32 -7.21 10.10 -39.23 -0.40 -7.61 16 15 C 0.13 3.21 11.17 -17.48 -0.20 3.01 16 16 N -0.48 -13.20 7.87 -10.90 -0.09 -13.28 16 17 C 0.28 7.44 6.39 -84.71 -0.54 6.90 16 18 C -0.41 -10.61 7.97 -37.92 -0.30 -10.92 16 19 H 0.08 2.08 5.83 -52.48 -0.31 1.77 16 20 C 0.07 1.75 5.49 -17.32 -0.10 1.65 16 21 N -0.71 -18.55 11.48 55.56 0.64 -17.91 16 22 Si 0.90 18.48 29.57 -169.99 -5.03 13.46 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 26 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.55 7.64 -51.93 -0.40 0.15 16 28 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 29 H 0.13 1.58 6.27 -52.49 -0.33 1.25 16 30 H 0.13 1.56 7.59 -52.48 -0.40 1.17 16 31 H 0.41 2.71 9.11 45.56 0.42 3.12 16 32 H 0.14 2.73 7.63 -52.49 -0.40 2.33 16 33 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.12 2.51 8.06 -52.48 -0.42 2.08 16 36 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -32.06 319.04 -6.86 -38.93 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -2.64 Total: 6.98 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -3.55 Total: -11.04 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.55 Total: -31.19 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -1.01 Total: -21.93 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.06 -6.86 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242392425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.788 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds