Wall clock time and date at job start Fri Apr 10 2020 20:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38068 * 120.33583 * 2 1 4 4 N 1.31932 * 120.86194 * 180.02562 * 3 2 1 5 5 C 1.32484 * 121.61815 * 359.97438 * 4 3 2 6 6 S 1.76192 * 119.71439 * 179.97438 * 5 4 3 7 7 C 1.81405 * 103.00072 * 359.97438 * 6 5 4 8 8 C 1.50696 * 109.47126 * 179.97438 * 7 6 5 9 9 C 1.38639 * 119.74657 * 90.00194 * 8 7 6 10 10 C 1.37622 * 120.24860 * 180.22798 * 9 8 7 11 11 C 1.40715 * 119.74171 * 359.52374 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22515 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48502 * 109.46794 * 89.99841 * 16 14 12 18 18 H 1.48499 * 109.47177 * 209.99507 * 16 14 12 19 19 H 1.48492 * 109.47228 * 330.00168 * 16 14 12 20 20 C 1.40715 * 119.51175 * 0.47555 * 11 10 9 21 21 C 1.37615 * 119.74353 * 359.75047 * 20 11 10 22 22 C 1.39158 * 120.57354 * 0.25170 * 5 4 3 23 23 C 1.50703 * 120.45128 * 179.74436 * 22 5 4 24 24 C 1.38309 * 119.09975 * 359.49912 * 22 5 4 25 25 H 1.08997 * 109.46886 * 90.00348 * 1 2 3 26 26 H 1.08997 * 109.47291 * 210.00310 * 1 2 3 27 27 H 1.08998 * 109.47131 * 330.00737 * 1 2 3 28 28 H 1.08004 * 119.56778 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.46636 * 59.99944 * 7 6 5 30 30 H 1.08996 * 109.47065 * 300.00012 * 7 6 5 31 31 H 1.08000 * 119.87572 * 359.95464 * 9 8 7 32 32 H 1.08002 * 120.12750 * 179.72105 * 10 9 8 33 33 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.12426 * 179.73134 * 20 11 10 35 35 H 1.08002 * 119.87199 * 180.02562 * 21 20 11 36 36 H 1.08996 * 109.47076 * 89.99767 * 23 22 5 37 37 H 1.09000 * 109.47467 * 210.00556 * 23 22 5 38 38 H 1.09007 * 109.47081 * 329.99985 * 23 22 5 39 39 H 1.07998 * 120.74913 * 180.24057 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1916 0.0000 4 7 3.5236 1.2038 -0.0005 5 6 4.2285 0.0820 -0.0005 6 16 5.9888 0.1567 -0.0019 7 6 6.3216 1.9400 -0.0038 8 6 7.8104 2.1731 -0.0044 9 6 8.4896 2.2784 -1.2085 10 6 9.8500 2.4866 -1.2211 11 6 10.5498 2.6027 -0.0059 12 6 11.9467 2.8215 -0.0066 13 1 12.5400 2.5259 0.8461 14 6 12.5605 3.4212 -1.1122 15 7 11.8408 4.0862 -1.9789 16 14 14.4072 3.2721 -1.3500 17 1 14.7064 2.0602 -2.1544 18 1 14.9136 4.4745 -2.0593 19 1 15.0697 3.1630 -0.0255 20 6 9.8499 2.4941 1.2101 21 6 8.4904 2.2812 1.1987 22 6 3.5906 -1.1548 -0.0053 23 6 4.3952 -2.4291 -0.0111 24 6 2.2082 -1.1987 0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6627 2.1261 -0.0004 29 1 5.8838 2.3921 0.8861 30 1 5.8825 2.3906 -0.8938 31 1 7.9499 2.1923 -2.1399 32 1 10.3778 2.5638 -2.1602 33 1 12.2662 4.5015 -2.7454 34 1 10.3778 2.5773 2.1486 35 1 7.9512 2.1979 2.1308 36 1 4.5898 -2.7405 1.0151 37 1 3.8364 -3.2093 -0.5279 38 1 5.3414 -2.2590 -0.5248 39 1 1.6858 -2.1439 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594917607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:37 Heat of formation + Delta-G solvation = 25.885167 kcal Electronic energy + Delta-G solvation = -19982.235621 eV Core-core repulsion = 16979.351813 eV Total energy + Delta-G solvation = -3002.883808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 299.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14086 -37.65723 -34.06936 -33.68589 -33.64198 -31.22251 -29.34789 -27.74734 -27.59923 -27.14503 -23.94266 -23.28688 -21.36767 -21.04625 -20.05883 -17.74137 -17.36333 -16.79232 -15.40001 -15.07699 -14.76340 -14.46583 -14.33187 -13.92122 -13.86475 -13.41360 -13.32292 -13.07815 -12.75191 -12.66274 -12.55498 -12.40648 -12.06752 -11.98478 -11.77191 -11.60607 -11.14206 -11.00073 -10.71668 -10.46861 -9.98615 -9.73042 -9.68618 -9.46805 -9.43125 -9.29667 -9.16479 -7.52856 -7.35061 -7.17569 -6.84511 -4.41944 1.00107 1.23660 1.74497 2.57560 2.91677 3.02672 3.05035 3.07114 3.33873 3.65729 3.87349 4.48602 4.57806 4.64787 4.82577 4.88962 5.02226 5.25545 5.34581 5.41925 5.58099 5.63924 5.64629 5.69246 5.70674 5.82488 6.03206 6.09928 6.18623 6.30309 6.31189 6.36884 6.61122 6.90162 6.99699 7.20727 7.28898 7.54568 7.77555 7.84797 7.98379 8.03827 8.21698 8.56318 8.80918 8.89306 10.09143 Molecular weight = 299.10amu Principal moments of inertia in cm(-1) A = 0.038188 B = 0.002690 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.043893 B =10404.562188 C =10615.746456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.157 4.157 3 C 0.107 3.893 4 N -0.485 5.485 5 C 0.116 3.884 6 S -0.087 6.087 7 C -0.012 4.012 8 C -0.216 4.216 9 C -0.078 4.078 10 C -0.167 4.167 11 C 0.117 3.883 12 C -0.455 4.455 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.786 5.786 16 Si 0.910 3.090 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.227 4.227 21 C -0.066 4.066 22 C -0.121 4.121 23 C -0.111 4.111 24 C -0.065 4.065 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.152 0.848 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.282 0.718 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.094 -8.219 1.394 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.163 4.163 3 C -0.054 4.054 4 N -0.196 5.196 5 C -0.133 4.133 6 S 0.160 5.840 7 C -0.159 4.159 8 C -0.221 4.221 9 C -0.098 4.098 10 C -0.187 4.187 11 C 0.114 3.886 12 C -0.484 4.484 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.411 5.411 16 Si 0.734 3.266 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.247 4.247 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.168 4.168 24 C -0.093 4.093 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.170 0.830 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.763 -8.123 1.179 16.891 hybrid contribution -0.688 0.365 -0.194 0.802 sum -15.451 -7.758 0.985 17.317 Atomic orbital electron populations 1.20645 0.90417 1.02777 1.02258 1.20775 0.97289 0.94078 1.04135 1.22583 0.89694 0.97437 0.95648 1.68130 1.08309 1.28997 1.14181 1.23466 1.00464 0.90654 0.98668 1.86056 0.92977 1.15499 1.89424 1.22112 0.97828 0.91203 1.04767 1.18465 0.91145 1.18299 0.94150 1.20540 0.94807 0.99382 0.95113 1.21301 0.92749 1.05852 0.98800 1.17683 0.93124 0.86874 0.90948 1.19684 0.92826 1.34130 1.01807 0.90180 1.25969 1.01034 0.92610 0.94787 1.69827 1.38368 1.22341 1.10555 0.86275 0.81965 0.78697 0.79621 1.19147 1.20239 1.18517 1.20954 0.93328 1.13360 0.97103 1.20381 0.94359 0.98698 0.95219 1.20491 0.94279 0.95354 1.02844 1.20737 0.99945 0.93247 1.02901 1.21229 0.92870 0.98043 0.97116 0.91249 0.91627 0.91413 0.83028 0.90279 0.90226 0.89276 0.86285 0.90666 0.88757 0.89251 0.90639 0.91353 0.90273 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.03 36.01 0.36 -0.37 16 2 C -0.16 -1.69 5.90 -104.45 -0.62 -2.31 16 3 C 0.11 1.37 10.85 -17.57 -0.19 1.18 16 4 N -0.48 -7.78 9.43 -12.11 -0.11 -7.89 16 5 C 0.12 1.86 7.00 -16.93 -0.12 1.74 16 6 S -0.09 -1.53 20.12 -107.50 -2.16 -3.69 16 7 C -0.01 -0.24 5.32 36.00 0.19 -0.05 16 8 C -0.22 -4.77 5.16 -104.33 -0.54 -5.31 16 9 C -0.08 -1.83 9.67 -39.66 -0.38 -2.22 16 10 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 11 C 0.12 3.09 5.57 -106.82 -0.60 2.49 16 12 C -0.46 -11.86 9.06 -37.74 -0.34 -12.20 16 13 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 14 C 0.07 1.84 5.14 -17.34 -0.09 1.76 16 15 N -0.79 -19.97 10.95 55.55 0.61 -19.36 16 16 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 16 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 21 C -0.07 -1.49 9.67 -39.67 -0.38 -1.88 16 22 C -0.12 -1.61 5.92 -104.25 -0.62 -2.22 16 23 C -0.11 -1.23 9.59 36.01 0.35 -0.88 16 24 C -0.07 -0.72 9.53 -39.32 -0.37 -1.10 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 29 H 0.08 1.49 8.08 -51.93 -0.42 1.07 16 30 H 0.08 1.52 8.08 -51.93 -0.42 1.10 16 31 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 33 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 34 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.08 0.97 6.80 -51.93 -0.35 0.62 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -28.07 344.50 -10.86 -38.93 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.29 Total: 5.52 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -4.07 Total: -31.96 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.49 Total: -27.25 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.16 Total: -3.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.07 -10.86 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594917607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.820 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds