Wall clock time and date at job start Fri Apr 10 2020 20:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46665 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.46816 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99920 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99949 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00095 * 180.02562 * 12 11 10 15 15 S 1.81009 * 109.47134 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99856 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00053 * 359.97438 * 16 15 14 18 18 C 1.38795 * 119.99906 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00137 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00302 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46777 * 90.00041 * 20 18 16 22 22 H 1.48494 * 109.47272 * 210.00258 * 20 18 16 23 23 H 1.48501 * 109.46671 * 330.00737 * 20 18 16 24 24 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 25 25 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 26 26 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 27 27 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 28 28 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 29 29 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 30 30 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 31 31 H 1.08997 * 109.47026 * 299.99598 * 9 8 7 32 32 H 1.08998 * 109.47655 * 59.99931 * 9 8 7 33 33 H 1.08997 * 109.47062 * 299.99566 * 10 9 8 34 34 H 1.08992 * 109.47418 * 59.99951 * 10 9 8 35 35 H 0.97001 * 120.00523 * 0.02562 * 11 10 9 36 36 H 1.08997 * 109.46852 * 299.99659 * 14 12 11 37 37 H 1.08998 * 109.47504 * 59.99793 * 14 12 11 38 38 H 0.97000 * 120.00470 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 1.1226 -4.8429 -2.8764 11 7 0.6850 -6.2405 -2.9144 12 6 0.4927 -6.8545 -4.0987 13 8 0.6815 -6.2498 -5.1330 14 6 0.0419 -8.2919 -4.1378 15 16 -0.1258 -8.8251 -5.8595 16 6 -0.6471 -10.4902 -5.6147 17 1 -0.7673 -10.8768 -4.6134 18 6 -0.9032 -11.3051 -6.7087 19 7 -0.7563 -10.8341 -7.9290 20 14 -1.4553 -13.0708 -6.4493 21 1 -2.9378 -13.1206 -6.3790 22 1 -0.9849 -13.9080 -7.5820 23 1 -0.8820 -13.5873 -5.1804 24 1 -0.3633 -0.0006 -1.0278 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 4.4065 1.3436 0.0003 28 1 2.5902 -3.1348 0.5157 29 1 0.8916 -2.6029 0.5158 30 1 2.5604 -2.8663 -1.8996 31 1 1.9997 -5.0175 -0.9168 32 1 0.3013 -4.4850 -0.9170 33 1 0.3864 -4.2174 -3.3811 34 1 2.0847 -4.7501 -3.3801 35 1 0.5328 -6.7238 -2.0872 36 1 0.7783 -8.9175 -3.6335 37 1 -0.9201 -8.3850 -3.6337 38 1 -0.9349 -11.4037 -8.6936 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:31 Heat of formation + Delta-G solvation = -16.893640 kcal Electronic energy + Delta-G solvation = -20239.417298 eV Core-core repulsion = 16823.829199 eV Total energy + Delta-G solvation = -3415.588099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.72177 -39.23661 -37.22588 -35.53720 -34.52756 -32.43798 -32.28185 -30.26695 -28.80458 -27.16958 -25.51681 -24.97337 -22.53134 -22.45909 -21.16076 -20.39615 -17.92922 -17.56059 -17.13126 -16.64406 -16.25315 -16.10250 -15.45438 -15.33017 -14.81624 -14.72528 -14.42927 -13.84443 -13.74819 -13.57439 -13.21239 -13.15284 -12.99052 -12.55791 -12.39346 -12.24206 -11.88154 -11.53551 -11.36865 -11.07142 -11.03370 -10.89887 -10.77260 -9.82861 -9.46718 -9.21383 -9.08074 -8.95388 -8.92859 -8.24647 -6.51085 -6.22423 -3.93216 1.01000 2.26541 2.33613 2.95662 3.07711 3.21672 3.25768 3.29799 3.56003 3.76999 4.04025 4.19481 4.23439 4.45132 4.56765 4.66139 4.78644 4.87153 5.11697 5.12692 5.16818 5.23129 5.32067 5.38922 5.55186 5.58759 5.69140 5.70022 5.83238 5.88090 5.98856 6.11882 6.30595 6.55583 6.74549 7.32662 7.58558 7.65727 8.34264 8.58449 9.22780 10.84968 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.050831 B = 0.001877 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.713324 B =14909.970692 C =14977.366532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.011 3.989 3 N -0.488 5.488 4 C 0.175 3.825 5 O -0.205 6.205 6 C -0.054 4.054 7 C 0.150 3.850 8 N -0.681 5.681 9 C 0.050 3.950 10 C 0.123 3.877 11 N -0.739 5.739 12 C 0.532 3.468 13 O -0.515 6.515 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.250 0.750 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.349 0.651 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 18.616 20.779 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 N -0.218 5.218 4 C -0.052 4.052 5 O -0.092 6.092 6 C -0.107 4.107 7 C 0.021 3.979 8 N -0.314 5.314 9 C -0.079 4.079 10 C -0.002 4.002 11 N -0.395 5.395 12 C 0.318 3.682 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.266 0.734 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.168 0.832 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.889 20.436 18.774 28.368 hybrid contribution 0.628 -2.980 2.010 3.650 sum 6.517 17.455 20.784 27.913 Atomic orbital electron populations 1.20138 0.86228 1.02987 1.03452 1.21553 0.98130 0.87315 1.03945 1.70399 1.01451 1.31838 1.18087 1.28037 0.97630 0.79219 1.00316 1.84419 1.30206 1.24783 1.69748 1.22945 0.80750 0.97656 1.09333 1.20222 1.01143 0.85614 0.90907 1.60347 1.38777 1.20093 1.12181 1.22123 1.01221 0.87534 0.97064 1.21111 1.01100 0.82667 0.95305 1.45886 1.71855 1.12847 1.08887 1.20306 0.76454 0.88504 0.82910 1.90715 1.49161 1.66415 1.32621 1.23529 1.03917 0.94388 1.08539 1.85422 1.88477 1.12793 0.96673 1.22865 1.52934 0.97120 0.95500 0.90913 1.24999 0.94991 0.99186 0.94442 1.70018 1.45762 1.36648 0.97824 0.86163 0.78894 0.82408 0.77994 1.20262 1.20748 1.19714 0.90084 0.90712 0.90844 0.73436 0.93017 0.87468 0.83206 0.94108 0.89796 0.90513 0.91746 0.76874 0.89222 0.89154 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.22 36.00 0.37 -0.13 16 2 C 0.01 0.10 7.11 -82.81 -0.59 -0.49 16 3 N -0.49 -4.86 11.30 -11.18 -0.13 -4.98 16 4 C 0.17 1.25 13.23 52.10 0.69 1.94 16 5 O -0.21 -1.73 10.77 5.38 0.06 -1.68 16 6 C -0.05 -0.45 6.90 -35.69 -0.25 -0.70 16 7 C 0.15 0.95 6.02 -4.97 -0.03 0.92 16 8 N -0.68 -5.03 6.49 -115.05 -0.75 -5.77 16 9 C 0.05 0.35 5.80 -3.82 -0.02 0.33 16 10 C 0.12 1.34 5.93 -4.04 -0.02 1.31 16 11 N -0.74 -9.26 5.56 -60.29 -0.33 -9.60 16 12 C 0.53 9.74 7.85 -10.98 -0.09 9.66 16 13 O -0.52 -11.68 15.86 5.55 0.09 -11.60 16 14 C -0.15 -3.03 6.16 36.01 0.22 -2.80 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 17 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 20 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.07 0.39 7.17 -51.93 -0.37 0.02 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.25 0.53 8.06 -52.49 -0.42 0.11 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.11 0.53 7.17 -51.93 -0.37 0.16 16 30 H 0.35 2.65 8.72 -39.30 -0.34 2.31 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 3.67 8.47 -40.82 -0.35 3.33 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -36.83 347.83 -7.05 -43.87 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.20 Total: 0.33 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 0.48 Total: -2.87 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.47 Total: -45.73 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.15 Total: -13.27 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.83 -7.05 -43.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.980 kcal (2) G-P(sol) polarization free energy of solvation -36.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds