Wall clock time and date at job start Fri Apr 10 2020 20:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47210 * 2 1 4 4 C 1.50703 * 109.47194 * 119.99928 * 2 1 3 5 5 H 1.08004 * 119.99892 * 119.99742 * 4 2 1 6 6 C 1.37877 * 120.00007 * 300.00139 * 4 2 1 7 7 N 1.31514 * 120.00070 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00139 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47420 * 89.99811 * 8 6 4 10 10 H 1.48503 * 109.47195 * 209.99982 * 8 6 4 11 11 H 1.48507 * 109.47290 * 329.99761 * 8 6 4 12 12 N 1.46507 * 109.47255 * 239.99739 * 2 1 3 13 13 C 1.34776 * 119.99445 * 85.00077 * 12 2 1 14 14 O 1.21275 * 120.00222 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99454 * 179.97438 * 13 12 2 16 16 C 1.50703 * 109.47329 * 179.97438 * 15 13 12 17 17 C 1.38262 * 119.94360 * 89.99592 * 16 15 13 18 18 C 1.38145 * 120.05938 * 180.02562 * 17 16 15 19 19 C 1.38731 * 119.93835 * 0.02562 * 18 17 16 20 20 O 1.35905 * 120.05264 * 180.02562 * 19 18 17 21 21 C 1.42905 * 116.99842 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.46886 * 299.99632 * 21 20 19 23 23 F 1.39898 * 109.47456 * 59.99851 * 21 20 19 24 24 C 1.38729 * 119.89194 * 0.27526 * 19 18 17 25 25 C 1.38146 * 119.94131 * 359.46928 * 24 19 18 26 26 H 1.08995 * 109.47513 * 300.00026 * 1 2 3 27 27 H 1.09003 * 109.47469 * 60.00224 * 1 2 3 28 28 H 1.09009 * 109.47020 * 179.97438 * 1 2 3 29 29 H 0.96997 * 120.00372 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99903 * 264.99670 * 12 2 1 31 31 H 1.09002 * 109.47097 * 59.99971 * 15 13 12 32 32 H 1.09006 * 109.47577 * 300.00167 * 15 13 12 33 33 H 1.08008 * 119.97547 * 359.97438 * 17 16 15 34 34 H 1.07990 * 120.03151 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.47103 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.03286 * 179.71870 * 24 19 18 37 37 H 1.08005 * 119.97222 * 180.23075 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4880 -2.5653 3.7123 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1585 -2.4114 15 6 2.6499 -0.7286 -3.5874 16 6 2.7000 0.2395 -4.7413 17 6 3.8479 0.9731 -4.9773 18 6 3.8962 1.8616 -6.0340 19 6 2.7913 2.0177 -6.8584 20 8 2.8365 2.8908 -7.8990 21 6 1.6618 3.0002 -8.7054 22 9 1.3673 1.7554 -9.2717 23 9 0.5881 3.4171 -7.9113 24 6 1.6386 1.2851 -6.6157 25 6 1.5972 0.3940 -5.5608 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 0.7088 1.1614 3.4844 30 1 2.2491 -1.6319 -1.1526 31 1 1.9777 -1.5509 -3.8324 32 1 3.6493 -1.1204 -3.3978 33 1 4.7074 0.8522 -4.3345 34 1 4.7928 2.4347 -6.2178 35 1 1.8320 3.7285 -9.4983 36 1 0.7756 1.4082 -7.2533 37 1 0.7013 -0.1794 -5.3737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:56 Heat of formation + Delta-G solvation = -164.850783 kcal Electronic energy + Delta-G solvation = -23521.681668 eV Core-core repulsion = 19513.544528 eV Total energy + Delta-G solvation = -4008.137140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.58504 -47.57646 -40.14850 -38.91803 -37.43726 -34.75520 -32.47642 -32.04326 -31.03333 -29.14491 -27.38516 -25.67339 -25.22828 -22.97865 -22.10835 -20.78241 -19.36341 -19.15650 -18.35747 -18.14350 -17.12526 -16.25234 -15.88860 -15.55025 -15.26298 -14.94362 -14.77475 -14.20854 -14.16393 -14.10194 -13.89943 -13.85061 -13.42622 -13.11858 -13.00560 -12.64198 -12.37519 -11.97038 -11.74353 -11.53647 -11.43166 -11.04432 -10.97152 -10.89451 -10.68940 -10.29575 -10.22854 -9.06436 -9.03598 -8.97782 -8.54226 -8.24174 -7.88279 -6.11667 -4.21122 1.30759 1.37519 2.36597 3.22439 3.24562 3.31117 3.32839 3.43590 3.63935 4.03152 4.22566 4.38178 4.45509 4.74956 4.80703 4.87349 5.16835 5.20579 5.35989 5.42947 5.65196 5.65736 5.71739 6.01311 6.15008 6.28239 6.53450 6.65197 6.83904 6.98189 7.04720 7.17039 7.48663 7.58015 7.70779 7.93053 8.16356 8.69246 8.79640 9.16715 9.46769 10.94302 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.035380 B = 0.002736 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.218943 B =10230.468716 C =10474.880718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.711 5.711 13 C 0.501 3.499 14 O -0.547 6.547 15 C -0.106 4.106 16 C -0.074 4.074 17 C -0.072 4.072 18 C -0.132 4.132 19 C 0.094 3.906 20 O -0.323 6.323 21 C 0.411 3.589 22 F -0.201 7.201 23 F -0.198 7.198 24 C -0.187 4.187 25 C -0.069 4.069 26 H 0.089 0.911 27 H 0.014 0.986 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.179 0.821 36 H 0.130 0.870 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -0.204 -21.925 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.359 5.359 13 C 0.285 3.715 14 O -0.425 6.425 15 C -0.146 4.146 16 C -0.075 4.075 17 C -0.090 4.090 18 C -0.151 4.151 19 C 0.051 3.949 20 O -0.241 6.241 21 C 0.321 3.679 22 F -0.183 7.183 23 F -0.179 7.179 24 C -0.206 4.206 25 C -0.087 4.087 26 H 0.108 0.892 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.196 0.804 36 H 0.148 0.852 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.366 0.872 -21.828 22.104 hybrid contribution -0.008 -0.995 0.925 1.358 sum 3.358 -0.123 -20.904 21.172 Atomic orbital electron populations 1.22073 0.98559 0.99037 1.00870 1.18720 0.90971 0.93974 0.80060 0.93448 1.21229 1.32413 1.13211 0.90366 0.92081 1.24899 0.94819 0.94974 0.99080 1.69905 1.35853 1.22474 1.23869 0.86448 0.78602 0.79820 0.82210 1.20568 1.21080 1.19851 1.46534 1.65338 1.13528 1.10542 1.20309 0.79036 0.87647 0.84520 1.90684 1.50803 1.16014 1.85043 1.20734 1.03796 0.97831 0.92212 1.19368 0.94019 0.98372 0.95739 1.20837 0.98111 0.94374 0.95703 1.20332 0.97334 1.01563 0.95825 1.18806 0.95683 0.91653 0.88739 1.86581 1.36970 1.59901 1.40645 1.23314 0.75256 0.82949 0.86386 1.93091 1.93309 1.46837 1.85032 1.93117 1.58253 1.89983 1.76583 1.21407 0.97328 1.00169 1.01656 1.20788 0.97678 0.96932 0.93304 0.89204 0.96698 0.95514 0.92578 0.77948 0.88494 0.88350 0.85036 0.85011 0.80443 0.85207 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.15 0.34 -3.35 16 2 C 0.26 6.77 2.56 -69.08 -0.18 6.59 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.08 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.71 -14.62 5.07 -54.93 -0.28 -14.90 16 13 C 0.50 9.82 7.79 -10.99 -0.09 9.73 16 14 O -0.55 -13.23 15.70 5.56 0.09 -13.14 16 15 C -0.11 -1.46 5.83 -29.03 -0.17 -1.62 16 16 C -0.07 -1.08 4.37 -104.60 -0.46 -1.54 16 17 C -0.07 -0.98 9.69 -39.61 -0.38 -1.37 16 18 C -0.13 -1.72 9.99 -39.43 -0.39 -2.11 16 19 C 0.09 1.26 6.48 -39.22 -0.25 1.01 16 20 O -0.32 -3.64 10.43 -19.44 -0.20 -3.85 16 21 C 0.41 3.42 5.98 101.05 0.60 4.02 16 22 F -0.20 -1.93 15.60 2.25 0.04 -1.90 16 23 F -0.20 -2.13 15.57 2.25 0.04 -2.10 16 24 C -0.19 -2.59 8.26 -39.43 -0.33 -2.91 16 25 C -0.07 -0.98 9.69 -39.61 -0.38 -1.37 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.39 6.76 8.54 -40.82 -0.35 6.42 16 31 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 32 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 33 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 34 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.18 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.13 1.66 5.10 -52.49 -0.27 1.40 16 37 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -33.39 326.58 -6.12 -39.51 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.24 Total: 5.99 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.08 Total: -5.71 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.35 Total: -39.35 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.12 Total: -16.99 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.07 Total: -4.00 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.39 -6.12 -39.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.341 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds