Wall clock time and date at job start Fri Apr 10 2020 20:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00136 * 2 1 4 4 C 1.52993 * 109.47250 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47231 * 64.99741 * 4 3 2 6 6 C 1.46506 * 119.99695 * 90.00202 * 5 4 3 7 7 C 1.50702 * 109.46971 * 83.64295 * 6 5 4 8 8 H 1.08001 * 120.00104 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99688 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99855 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00026 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46971 * 89.99977 * 11 9 7 13 13 H 1.48497 * 109.46863 * 209.99921 * 11 9 7 14 14 H 1.48498 * 109.46867 * 329.99989 * 11 9 7 15 15 C 1.34774 * 120.00347 * 270.00083 * 5 4 3 16 16 O 1.21568 * 120.00018 * 5.20280 * 15 5 4 17 17 C 1.47698 * 120.00030 * 185.20210 * 15 5 4 18 18 C 1.39678 * 120.15539 * 52.73089 * 17 15 5 19 19 C 1.37847 * 119.92390 * 179.69499 * 18 17 15 20 20 C 1.38445 * 120.24302 * 0.60170 * 19 18 17 21 21 C 1.38387 * 120.31121 * 359.67128 * 20 19 18 22 22 F 1.35098 * 119.96628 * 180.02562 * 21 20 19 23 23 C 1.38544 * 120.07091 * 0.02562 * 21 20 19 24 24 F 1.35098 * 120.12190 * 180.02562 * 23 21 20 25 25 H 1.09001 * 109.47139 * 300.00154 * 1 2 3 26 26 H 1.08998 * 109.47131 * 60.00102 * 1 2 3 27 27 H 1.09004 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46756 * 59.99798 * 3 2 1 29 29 H 1.08993 * 109.46978 * 299.99750 * 3 2 1 30 30 H 1.09011 * 109.47126 * 304.99922 * 4 3 2 31 31 H 1.08999 * 109.47760 * 185.00421 * 4 3 2 32 32 H 1.08998 * 109.46682 * 203.64044 * 6 5 4 33 33 H 1.08997 * 109.47113 * 323.63775 * 6 5 4 34 34 H 0.97005 * 119.99804 * 179.97438 * 10 9 7 35 35 H 1.07999 * 120.03644 * 359.97438 * 18 17 15 36 36 H 1.08003 * 119.87841 * 180.27025 * 19 18 17 37 37 H 1.07992 * 119.84599 * 179.69476 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.2883 1.3998 -2.4130 7 6 5.7025 1.9084 -2.3011 8 1 6.3086 1.6359 -1.4498 9 6 6.2225 2.7216 -3.2857 10 7 5.4845 3.0529 -4.3226 11 14 7.9752 3.3527 -3.1467 12 1 8.9005 2.3914 -3.7986 13 1 8.0803 4.6734 -3.8174 14 1 8.3379 3.4949 -1.7138 15 6 4.0959 -0.7760 -1.3331 16 8 3.7478 -1.4756 -0.4018 17 6 4.6495 -1.3946 -2.5547 18 6 5.8803 -0.9698 -3.0604 19 6 6.3954 -1.5548 -4.1973 20 6 5.6915 -2.5538 -4.8477 21 6 4.4685 -2.9784 -4.3586 22 9 3.7877 -3.9542 -4.9986 23 6 3.9415 -2.4038 -3.2134 24 9 2.7479 -2.8178 -2.7347 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8507 0.5684 0.8428 31 1 3.9785 2.1764 0.0903 32 1 4.1855 0.8091 -3.3233 33 1 3.6001 2.2442 -2.4482 34 1 5.8502 3.6254 -5.0151 35 1 6.4298 -0.1871 -2.5586 36 1 7.3492 -1.2288 -4.5852 37 1 6.0988 -3.0042 -5.7407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103216113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:45 Heat of formation + Delta-G solvation = -139.126056 kcal Electronic energy + Delta-G solvation = -25145.934044 eV Core-core repulsion = 21138.912412 eV Total energy + Delta-G solvation = -4007.021632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.09343 -48.15579 -39.58692 -37.90639 -37.09378 -35.02853 -32.76271 -31.21765 -29.98358 -29.32381 -27.17767 -26.02528 -24.03876 -23.14179 -22.39832 -21.92690 -19.14037 -17.49015 -17.14195 -16.70822 -16.54913 -16.12099 -16.07853 -15.81491 -15.37230 -15.09423 -14.57847 -14.53669 -14.46902 -14.40520 -13.92717 -13.56764 -13.04343 -12.58277 -12.39335 -12.22452 -11.91427 -11.74122 -11.59516 -11.46353 -11.32289 -11.23280 -10.98518 -10.83992 -10.69417 -10.24716 -9.85906 -9.33065 -9.15883 -8.74398 -8.55897 -8.34859 -7.77184 -6.29799 -4.38327 1.12297 1.34609 3.12304 3.22082 3.23495 3.29010 3.62331 3.95423 4.17445 4.19522 4.25595 4.66785 4.92443 5.00775 5.20138 5.27359 5.41156 5.49036 5.49631 5.64178 5.67900 5.71242 5.86946 5.94135 6.06080 6.10184 6.29359 6.34770 6.60655 6.65580 6.69618 7.08576 7.13217 7.42432 7.58478 7.63170 7.92411 8.25928 8.66156 8.94789 9.28596 10.75969 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.010158 B = 0.007989 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.705386 B = 3504.005835 C = 5665.843377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.125 3.875 5 N -0.586 5.586 6 C 0.234 3.766 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.070 3.930 10 N -0.882 5.882 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.562 3.438 16 O -0.535 6.535 17 C -0.124 4.124 18 C -0.039 4.039 19 C -0.110 4.110 20 C -0.114 4.114 21 C 0.043 3.957 22 F -0.136 7.136 23 C 0.105 3.895 24 F -0.121 7.121 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.171 0.829 36 H 0.141 0.859 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 -4.515 1.373 5.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.035 4.035 4 C 0.002 3.998 5 N -0.317 5.317 6 C 0.114 3.886 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.135 4.135 10 N -0.519 5.519 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.348 3.652 16 O -0.413 6.413 17 C -0.128 4.128 18 C -0.057 4.057 19 C -0.129 4.129 20 C -0.133 4.133 21 C 0.023 3.977 22 F -0.114 7.114 23 C 0.084 3.916 24 F -0.099 7.099 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.188 0.812 36 H 0.158 0.842 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.901 -4.958 1.685 5.571 hybrid contribution 0.275 0.639 -0.337 0.773 sum -1.626 -4.319 1.348 4.808 Atomic orbital electron populations 1.22667 0.82535 1.02167 0.99102 1.88156 1.18210 1.27004 1.95141 1.23044 0.95353 0.85256 0.99798 1.21344 0.91231 0.99499 0.87771 1.47992 1.64208 1.05350 1.14150 1.19514 0.96288 0.90194 0.82617 1.21460 0.98028 1.31203 1.07525 0.91661 1.24944 0.97973 0.95565 0.94988 1.69930 1.36613 1.35423 1.09919 0.86589 0.84363 0.78621 0.78554 1.20232 1.21032 1.19653 1.17806 0.78412 0.82729 0.86230 1.90753 1.49356 1.62050 1.39107 1.19978 0.97244 0.97480 0.98138 1.22025 0.93359 0.95900 0.94464 1.21034 1.00724 0.95499 0.95594 1.21131 0.92700 0.98520 1.00921 1.17424 0.93819 0.92613 0.93841 1.91483 1.79405 1.59843 1.80694 1.17624 0.83412 0.96790 0.93790 1.91537 1.42119 1.88842 1.87403 0.94794 0.94679 0.90171 0.93216 0.93202 0.90140 0.88442 0.94151 0.94736 0.92340 0.81198 0.84162 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.88 9.27 -48.36 -0.45 -7.32 16 3 C 0.04 0.72 6.28 37.15 0.23 0.95 16 4 C 0.13 2.26 5.86 -4.05 -0.02 2.24 16 5 N -0.59 -12.27 2.44 -176.23 -0.43 -12.70 16 6 C 0.23 5.28 4.67 -5.19 -0.02 5.26 16 7 C -0.54 -12.65 6.70 -34.44 -0.23 -12.88 16 8 H 0.07 1.51 7.66 -52.49 -0.40 1.11 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.88 -22.57 13.29 55.43 0.74 -21.84 16 11 Si 0.89 18.64 29.54 -169.99 -5.02 13.62 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 15 C 0.56 12.37 6.58 -12.40 -0.08 12.28 16 16 O -0.53 -12.88 15.39 -7.82 -0.12 -13.00 16 17 C -0.12 -2.52 4.53 -104.92 -0.48 -3.00 16 18 C -0.04 -0.72 7.85 -39.19 -0.31 -1.03 16 19 C -0.11 -1.70 10.02 -39.65 -0.40 -2.09 16 20 C -0.11 -1.67 10.01 -39.45 -0.40 -2.06 16 21 C 0.04 0.74 7.30 -39.41 -0.29 0.45 16 22 F -0.14 -2.29 17.18 2.25 0.04 -2.25 16 23 C 0.10 2.07 7.27 -38.90 -0.28 1.79 16 24 F -0.12 -2.55 16.54 2.25 0.04 -2.51 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.48 7.50 -51.92 -0.39 1.09 16 31 H 0.10 1.62 8.07 -51.93 -0.42 1.20 16 32 H 0.04 0.98 6.24 -51.93 -0.32 0.66 16 33 H 0.03 0.82 8.12 -51.93 -0.42 0.40 16 34 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.17 3.29 5.41 -52.49 -0.28 3.01 16 36 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -28.79 326.67 -5.88 -34.67 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.33 Total: 1.36 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.26 Total: 5.06 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.31 Total: -34.54 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.57 Total: -20.32 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.08 Total: -4.77 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.79 -5.88 -34.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103216113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.460 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds