Wall clock time and date at job start Fri Apr 10 2020 20:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81396 * 109.47106 * 2 1 4 4 C 1.81403 * 102.99875 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46955 * 305.00038 * 4 3 2 6 6 C 1.52999 * 109.47009 * 65.00108 * 4 3 2 7 7 C 1.50703 * 109.46843 * 185.00027 * 4 3 2 8 8 N 1.29942 * 126.29030 * 315.02227 * 7 4 3 9 9 O 1.21295 * 110.25076 * 180.02562 * 8 7 4 10 10 C 1.33637 * 109.81224 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.55125 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.47289 * 270.02696 * 11 10 9 13 13 C 1.46498 * 119.99755 * 270.00096 * 12 11 10 14 14 C 1.34774 * 119.99868 * 89.99907 * 12 11 10 15 15 O 1.21695 * 120.00192 * 359.97438 * 14 12 11 16 16 C 1.46376 * 119.99970 * 180.02562 * 14 12 11 17 17 H 1.08001 * 119.99723 * 359.97438 * 16 14 12 18 18 C 1.40047 * 120.00058 * 179.97438 * 16 14 12 19 19 N 1.30674 * 120.00013 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00110 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47216 * 89.99793 * 20 18 16 22 22 H 1.48500 * 109.47389 * 209.99941 * 20 18 16 23 23 H 1.48501 * 109.47057 * 329.99921 * 20 18 16 24 24 N 1.31129 * 106.90087 * 0.23128 * 10 9 8 25 25 H 1.09002 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 300.00336 * 1 2 3 27 27 H 1.09004 * 109.47463 * 59.99881 * 1 2 3 28 28 H 1.09004 * 109.46627 * 240.00072 * 2 1 3 29 29 H 1.08996 * 109.46880 * 119.99967 * 2 1 3 30 30 H 1.08998 * 109.46894 * 299.99630 * 6 4 3 31 31 H 1.08994 * 109.47319 * 60.00154 * 6 4 3 32 32 H 1.08999 * 109.46871 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47438 * 150.02477 * 11 10 9 34 34 H 1.09004 * 109.47113 * 30.02733 * 11 10 9 35 35 H 1.08999 * 109.46923 * 90.00257 * 13 12 11 36 36 H 1.08997 * 109.46694 * 209.99389 * 13 12 11 37 37 H 1.08995 * 109.47258 * 329.99665 * 13 12 11 38 38 H 0.96999 * 119.99927 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 -0.0008 5 1 4.2320 0.8790 0.8408 6 6 4.3746 0.8427 -1.3084 7 6 4.5958 2.8555 0.1230 8 7 4.2726 3.9318 -0.5295 9 8 4.9934 4.8518 -0.2051 10 6 5.8712 4.4374 0.7133 11 6 6.9393 5.2703 1.3741 12 7 8.1722 5.1983 0.5859 13 6 9.1597 4.1527 0.8644 14 6 8.3977 6.0941 -0.3955 15 8 7.5771 6.9625 -0.6272 16 6 9.6292 6.0220 -1.1834 17 1 10.3572 5.2511 -0.9781 18 6 9.8633 6.9525 -2.2035 19 7 8.9822 7.8849 -2.4523 20 14 11.4352 6.8609 -3.2086 21 1 11.2161 5.9911 -4.3921 22 1 11.8147 8.2239 -3.6596 23 1 12.5246 6.2947 -2.3732 24 7 5.6293 3.1662 0.9257 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8982 -0.1335 -1.3979 31 1 4.0797 1.4695 -2.1500 32 1 5.4576 0.7195 -1.3087 33 1 7.1274 4.8900 2.3782 34 1 6.6066 6.3065 1.4345 35 1 8.9378 3.2732 0.2600 36 1 10.1563 4.5198 0.6195 37 1 9.1196 3.8872 1.9208 38 1 9.1446 8.5296 -3.1586 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331067708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:41 Heat of formation + Delta-G solvation = 31.235814 kcal Electronic energy + Delta-G solvation = -21859.419010 eV Core-core repulsion = 18445.917960 eV Total energy + Delta-G solvation = -3413.501050 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.17728 -37.92106 -36.12603 -34.56764 -33.40330 -33.04148 -32.55634 -31.33653 -28.28648 -26.11210 -25.17490 -24.82126 -23.94114 -22.98040 -21.06886 -19.45245 -17.70655 -17.17777 -16.63124 -16.45799 -15.72559 -15.40460 -15.05053 -14.91992 -14.68385 -14.57110 -14.21047 -13.58337 -12.91244 -12.86632 -12.69886 -12.55800 -12.35834 -12.02566 -11.70413 -11.63294 -11.56143 -11.52381 -11.38499 -11.23950 -11.10592 -11.00802 -10.74534 -10.34716 -10.26574 -10.03456 -9.63179 -8.94806 -7.87843 -7.76240 -7.63224 -6.30093 -4.76746 1.15850 1.59115 2.25601 2.58275 3.08751 3.16253 3.19092 3.28848 3.65219 4.00671 4.29959 4.42126 4.46681 4.59162 4.65436 4.73836 4.78681 5.04937 5.25040 5.36196 5.43842 5.48044 5.53452 5.58194 5.67307 5.76227 5.86058 5.91830 5.93777 6.07546 6.29607 6.32942 6.46484 7.31397 7.35335 7.90343 8.16373 8.53233 8.91198 9.18358 10.41347 10.61770 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.026727 B = 0.003249 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.370248 B = 8617.181743 C = 8792.913469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 S -0.222 6.222 4 C 0.037 3.963 5 H 0.114 0.886 6 C -0.144 4.144 7 C 0.168 3.832 8 N -0.370 5.370 9 O 0.099 5.901 10 C 0.193 3.807 11 C 0.210 3.790 12 N -0.638 5.638 13 C 0.101 3.899 14 C 0.549 3.451 15 O -0.564 6.564 16 C -0.538 4.538 17 H 0.075 0.925 18 C 0.086 3.914 19 N -0.761 5.761 20 Si 0.909 3.091 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.264 1.264 24 N -0.486 5.486 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.447 -14.904 6.190 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.246 4.246 3 S 0.004 5.996 4 C -0.093 4.093 5 H 0.132 0.868 6 C -0.204 4.204 7 C -0.106 4.106 8 N -0.075 5.075 9 O 0.039 5.961 10 C -0.029 4.029 11 C 0.082 3.918 12 N -0.377 5.377 13 C -0.043 4.043 14 C 0.356 3.644 15 O -0.446 6.446 16 C -0.574 4.574 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.390 5.390 20 Si 0.733 3.267 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.188 1.188 24 N -0.221 5.221 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.126 -13.680 5.543 17.900 hybrid contribution 1.653 -1.261 -0.497 2.138 sum -8.472 -14.941 5.046 17.902 Atomic orbital electron populations 1.21493 0.92037 1.02517 1.03369 1.23406 1.00356 0.95786 1.05043 1.87354 1.02552 1.11734 1.97948 1.21102 0.93572 0.91281 1.03318 0.86831 1.22096 1.02582 1.00537 0.95202 1.24601 0.94960 0.96235 0.94754 1.74652 1.14870 0.97212 1.20810 1.85419 1.33579 1.32958 1.44163 1.30183 0.93206 0.90444 0.89105 1.19664 0.81036 0.98410 0.92651 1.48284 1.16813 1.33833 1.38746 1.21495 0.93678 0.90463 0.98632 1.18454 0.88059 0.79600 0.78248 1.90645 1.48420 1.36846 1.68673 1.20966 1.03765 1.15623 1.17083 0.90731 1.25754 0.97178 0.94009 0.96505 1.70005 1.32533 1.11300 1.25118 0.86346 0.81993 0.78177 0.80160 1.19721 1.20312 1.18770 1.71810 1.14659 1.11339 1.24300 0.91018 0.91645 0.91553 0.89830 0.90003 0.91253 0.90635 0.90942 0.87615 0.86972 0.94939 0.90322 0.93348 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.92 37.16 0.37 -0.61 16 2 C -0.10 -0.82 6.36 37.16 0.24 -0.59 16 3 S -0.22 -2.89 20.99 -107.50 -2.26 -5.14 16 4 C 0.04 0.51 3.32 -27.88 -0.09 0.42 16 5 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 6 C -0.14 -1.71 9.08 37.16 0.34 -1.38 16 7 C 0.17 3.00 6.84 -156.37 -1.07 1.93 16 8 N -0.37 -7.52 11.96 30.89 0.37 -7.15 16 9 O 0.10 2.16 11.31 18.12 0.20 2.36 16 10 C 0.19 3.76 8.10 -13.06 -0.11 3.66 16 11 C 0.21 3.82 6.07 -5.19 -0.03 3.79 16 12 N -0.64 -13.66 2.86 -184.63 -0.53 -14.19 16 13 C 0.10 1.77 10.19 59.85 0.61 2.38 16 14 C 0.55 14.90 7.61 -12.99 -0.10 14.80 16 15 O -0.56 -17.35 14.60 5.19 0.08 -17.28 16 16 C -0.54 -14.52 8.74 -35.63 -0.31 -14.83 16 17 H 0.07 1.83 6.00 -52.49 -0.31 1.51 16 18 C 0.09 2.33 5.50 -17.37 -0.10 2.23 16 19 N -0.76 -22.19 11.83 55.55 0.66 -21.53 16 20 Si 0.91 19.56 29.56 -169.99 -5.02 14.53 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 N -0.49 -8.92 11.55 -9.88 -0.11 -9.03 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.62 7.14 -51.92 -0.37 0.25 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.62 6.92 -51.93 -0.36 0.26 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 1.49 7.89 -51.93 -0.41 1.08 16 34 H 0.11 2.10 7.42 -51.93 -0.39 1.72 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.40 6.09 -51.93 -0.32 1.08 16 37 H 0.05 0.68 7.89 -51.93 -0.41 0.27 16 38 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -34.13 340.48 -6.82 -40.95 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.08 Total: -0.46 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -0.25 Total: 11.80 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.38 Total: -51.90 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.28 Total: -14.91 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: -2.89 SS G_CDS: -2.26 Total: -5.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.13 -6.82 -40.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331067708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.188 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds