Wall clock time and date at job start Fri Apr 10 2020 20:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81396 * 109.47106 * 2 1 4 4 C 1.81403 * 102.99875 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.46955 * 305.00038 * 4 3 2 6 6 C 1.52999 * 109.47009 * 65.00108 * 4 3 2 7 7 C 1.50703 * 109.46843 * 185.00027 * 4 3 2 8 8 N 1.29942 * 126.29030 * 315.02227 * 7 4 3 9 9 O 1.21295 * 110.25076 * 180.02562 * 8 7 4 10 10 C 1.33637 * 109.81224 * 359.97438 * 9 8 7 11 11 C 1.50703 * 126.55125 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.47289 * 270.02696 * 11 10 9 13 13 C 1.46498 * 119.99755 * 270.00096 * 12 11 10 14 14 C 1.34774 * 119.99868 * 89.99907 * 12 11 10 15 15 O 1.21695 * 120.00192 * 359.97438 * 14 12 11 16 16 C 1.46376 * 119.99970 * 180.02562 * 14 12 11 17 17 H 1.08001 * 119.99723 * 359.97438 * 16 14 12 18 18 C 1.40047 * 120.00058 * 179.97438 * 16 14 12 19 19 N 1.30674 * 120.00013 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00110 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47216 * 89.99793 * 20 18 16 22 22 H 1.48500 * 109.47389 * 209.99941 * 20 18 16 23 23 H 1.48501 * 109.47057 * 329.99921 * 20 18 16 24 24 N 1.31129 * 106.90087 * 0.23128 * 10 9 8 25 25 H 1.09002 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 300.00336 * 1 2 3 27 27 H 1.09004 * 109.47463 * 59.99881 * 1 2 3 28 28 H 1.09004 * 109.46627 * 240.00072 * 2 1 3 29 29 H 1.08996 * 109.46880 * 119.99967 * 2 1 3 30 30 H 1.08998 * 109.46894 * 299.99630 * 6 4 3 31 31 H 1.08994 * 109.47319 * 60.00154 * 6 4 3 32 32 H 1.08999 * 109.46871 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.47438 * 150.02477 * 11 10 9 34 34 H 1.09004 * 109.47113 * 30.02733 * 11 10 9 35 35 H 1.08999 * 109.46923 * 90.00257 * 13 12 11 36 36 H 1.08997 * 109.46694 * 209.99389 * 13 12 11 37 37 H 1.08995 * 109.47258 * 329.99665 * 13 12 11 38 38 H 0.96999 * 119.99927 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 -0.0008 5 1 4.2320 0.8790 0.8408 6 6 4.3746 0.8427 -1.3084 7 6 4.5958 2.8555 0.1230 8 7 4.2726 3.9318 -0.5295 9 8 4.9934 4.8518 -0.2051 10 6 5.8712 4.4374 0.7133 11 6 6.9393 5.2703 1.3741 12 7 8.1722 5.1983 0.5859 13 6 9.1597 4.1527 0.8644 14 6 8.3977 6.0941 -0.3955 15 8 7.5771 6.9625 -0.6272 16 6 9.6292 6.0220 -1.1834 17 1 10.3572 5.2511 -0.9781 18 6 9.8633 6.9525 -2.2035 19 7 8.9822 7.8849 -2.4523 20 14 11.4352 6.8609 -3.2086 21 1 11.2161 5.9911 -4.3921 22 1 11.8147 8.2239 -3.6596 23 1 12.5246 6.2947 -2.3732 24 7 5.6293 3.1662 0.9257 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8982 -0.1335 -1.3979 31 1 4.0797 1.4695 -2.1500 32 1 5.4576 0.7195 -1.3087 33 1 7.1274 4.8900 2.3782 34 1 6.6066 6.3065 1.4345 35 1 8.9378 3.2732 0.2600 36 1 10.1563 4.5198 0.6195 37 1 9.1196 3.8872 1.9208 38 1 9.1446 8.5296 -3.1586 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331067708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:41 Heat of formation + Delta-G solvation = 6.959633 kcal Electronic energy + Delta-G solvation = -21860.471704 eV Core-core repulsion = 18445.917960 eV Total energy + Delta-G solvation = -3414.553744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.67722 -39.79669 -37.51706 -36.32196 -34.76160 -34.61417 -33.76213 -32.67774 -29.92249 -27.97787 -26.57998 -26.27260 -24.71179 -24.32868 -22.50552 -21.22697 -19.22864 -18.63376 -18.48358 -17.70985 -17.52311 -16.62378 -16.37854 -16.09576 -15.97684 -15.84248 -15.58476 -14.71701 -14.45721 -14.35984 -13.90695 -13.68265 -13.47701 -13.29956 -13.20898 -13.10040 -12.99550 -12.88806 -12.75199 -12.62829 -12.35237 -12.24049 -12.17492 -12.12217 -12.01394 -11.17385 -10.94894 -10.91385 -9.85737 -9.42059 -8.86577 -8.31504 -6.87601 -0.06520 0.29209 1.14305 1.40546 1.40650 1.45278 1.56644 1.79753 2.22752 2.32312 2.48774 2.78537 2.96579 3.53925 3.68356 3.69435 4.01211 4.03980 4.06699 4.19674 4.36771 4.45918 4.55922 4.56496 4.58148 4.65229 4.79186 4.84780 4.87581 4.88874 4.98418 5.04131 5.22009 5.36428 5.62631 6.04551 6.22024 6.85566 7.01334 7.26855 8.39257 8.63080 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.026727 B = 0.003249 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.370248 B = 8617.181743 C = 8792.913469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 S -0.282 6.282 4 C 0.041 3.959 5 H 0.135 0.865 6 C -0.139 4.139 7 C 0.178 3.822 8 N -0.395 5.395 9 O 0.058 5.942 10 C 0.188 3.812 11 C 0.211 3.789 12 N -0.639 5.639 13 C 0.100 3.900 14 C 0.535 3.465 15 O -0.615 6.615 16 C -0.563 4.563 17 H 0.096 0.904 18 C 0.029 3.971 19 N -0.817 5.817 20 Si 0.993 3.007 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.243 1.243 24 N -0.479 5.479 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 -18.117 6.940 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.227 4.227 3 S -0.057 6.057 4 C -0.089 4.089 5 H 0.153 0.847 6 C -0.198 4.198 7 C -0.096 4.096 8 N -0.107 5.107 9 O 0.004 5.996 10 C -0.034 4.034 11 C 0.084 3.916 12 N -0.376 5.376 13 C -0.043 4.043 14 C 0.342 3.658 15 O -0.501 6.501 16 C -0.599 4.599 17 H 0.114 0.886 18 C -0.187 4.187 19 N -0.447 5.447 20 Si 0.813 3.187 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.166 1.166 24 N -0.215 5.215 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.116 0.884 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.063 -16.911 6.345 20.209 hybrid contribution 1.208 -0.399 -0.640 1.424 sum -7.856 -17.310 5.706 19.847 Atomic orbital electron populations 1.21533 0.91187 1.03978 1.02683 1.23537 1.00747 0.91783 1.06671 1.87623 1.02722 1.17209 1.98133 1.21320 0.93475 0.89090 1.04985 0.84732 1.22081 1.02650 1.01727 0.93365 1.25440 0.93996 0.97239 0.92933 1.74663 1.15752 0.97868 1.22373 1.85393 1.34677 1.34160 1.45338 1.30421 0.93193 0.91039 0.88791 1.19953 0.79500 0.98104 0.94066 1.48032 1.18451 1.33507 1.37652 1.21674 0.92307 0.88951 1.01342 1.18773 0.87876 0.79909 0.79224 1.90603 1.49823 1.39168 1.70492 1.21519 1.04443 1.16410 1.17523 0.88592 1.26981 1.01074 0.93057 0.97586 1.70180 1.35444 1.12704 1.26354 0.85078 0.77091 0.78398 0.78175 1.19204 1.19855 1.16618 1.71831 1.14775 1.10536 1.24321 0.88238 0.92266 0.92411 0.88232 0.88214 0.87590 0.92743 0.91224 0.82717 0.88391 0.95031 0.90697 0.89034 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.92 71.98 0.71 -0.90 16 2 C -0.08 -1.11 6.36 71.98 0.46 -0.65 16 3 S -0.28 -7.07 20.99 -56.49 -1.19 -8.26 16 4 C 0.04 1.06 3.32 29.85 0.10 1.16 16 5 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 6 C -0.14 -3.04 9.08 71.98 0.65 -2.39 16 7 C 0.18 6.31 6.84 138.46 0.95 7.26 16 8 N -0.39 -16.61 11.96 -60.36 -0.72 -17.33 16 9 O 0.06 2.64 11.31 74.90 0.85 3.49 16 10 C 0.19 7.40 8.10 88.38 0.72 8.11 16 11 C 0.21 7.60 6.07 85.63 0.52 8.12 16 12 N -0.64 -27.20 2.86 -856.26 -2.45 -29.65 16 13 C 0.10 3.28 10.19 127.77 1.30 4.58 16 14 C 0.54 29.77 7.61 86.36 0.66 30.43 16 15 O -0.62 -39.69 14.60 -4.33 -0.06 -39.76 16 16 C -0.56 -30.63 8.74 24.83 0.22 -30.41 16 17 H 0.10 4.62 6.00 -2.91 -0.02 4.60 16 18 C 0.03 1.56 5.50 85.30 0.47 2.03 16 19 N -0.82 -49.36 11.83 21.84 0.26 -49.10 16 20 Si 0.99 40.04 29.56 68.60 2.03 42.07 16 21 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 23 H -0.24 -8.91 7.11 99.48 0.71 -8.21 16 24 N -0.48 -17.18 11.55 -303.24 -3.50 -20.69 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.10 1.10 7.14 -2.39 -0.02 1.08 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 1.52 6.92 -2.39 -0.02 1.51 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.16 3.96 7.89 -2.39 -0.02 3.95 16 34 H 0.10 3.82 7.42 -2.38 -0.02 3.80 16 35 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 2.51 6.09 -2.39 -0.01 2.50 16 37 H 0.09 2.22 7.89 -2.39 -0.02 2.20 16 38 H 0.27 15.10 8.29 -92.71 -0.77 14.33 16 Total: -1.00 -78.86 340.48 3.04 -75.82 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.08 Total: 16.06 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: 6.75 Total: 27.35 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -6.41 Total: -116.77 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: 0.78 Total: -36.27 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -1.19 Total: -8.26 kcal Total: -78.86 3.04 -75.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331067708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.783 kcal (2) G-P(sol) polarization free energy of solvation -78.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds