Wall clock time and date at job start Fri Apr 10 2020 20:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46865 * 2 1 4 4 H 1.08998 * 109.46954 * 185.16098 * 3 2 1 5 5 C 1.50702 * 109.47089 * 305.15820 * 3 2 1 6 6 H 1.08001 * 120.00486 * 119.99838 * 5 3 2 7 7 C 1.37881 * 119.99935 * 300.00053 * 5 3 2 8 8 N 1.31519 * 120.00048 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99959 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46922 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46797 * 120.00166 * 9 7 5 12 12 H 1.48498 * 109.47198 * 240.00252 * 9 7 5 13 13 N 1.46903 * 109.47314 * 65.15503 * 3 2 1 14 14 C 1.46903 * 110.99330 * 85.90271 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.80951 * 14 13 3 16 16 C 1.38262 * 119.91884 * 269.71903 * 15 14 13 17 17 C 1.38337 * 120.12854 * 179.76657 * 16 15 14 18 18 Cl 1.73601 * 120.00897 * 180.27418 * 17 16 15 19 19 C 1.38656 * 119.98114 * 0.51222 * 17 16 15 20 20 O 1.36019 * 120.07938 * 179.76873 * 19 17 16 21 21 C 1.39116 * 119.84670 * 359.74405 * 19 17 16 22 22 O 1.35991 * 120.06445 * 180.02562 * 21 19 17 23 23 C 1.42900 * 116.99711 * 179.97438 * 22 21 19 24 24 C 1.38221 * 119.92714 * 89.99887 * 15 14 13 25 25 H 1.09007 * 109.47111 * 54.85310 * 1 2 3 26 26 H 1.08998 * 109.47521 * 294.84926 * 1 2 3 27 27 H 1.09005 * 109.47086 * 174.85061 * 1 2 3 28 28 H 1.08995 * 109.46923 * 119.99135 * 2 1 3 29 29 H 1.08993 * 109.47489 * 240.00124 * 2 1 3 30 30 H 0.97001 * 119.99591 * 179.97438 * 8 7 5 31 31 H 1.00893 * 110.99853 * 321.94571 * 13 3 2 32 32 H 1.08994 * 109.46864 * 294.80116 * 14 13 3 33 33 H 1.08994 * 109.47486 * 54.80803 * 14 13 3 34 34 H 1.08001 * 119.93300 * 0.02740 * 16 15 14 35 35 H 0.96703 * 113.99598 * 269.97426 * 20 19 17 36 36 H 1.09002 * 109.47368 * 300.00306 * 23 22 21 37 37 H 1.08999 * 109.46731 * 60.00664 * 23 22 21 38 38 H 1.09002 * 109.47131 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.98811 * 359.95398 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1616 6 1 0.8267 3.0627 -0.9841 7 6 1.6611 1.7559 -2.4512 8 7 2.4026 0.6914 -2.6675 9 14 0.9119 2.6806 -3.8911 10 1 0.1257 3.8336 -3.3836 11 1 1.9946 3.1731 -4.7803 12 1 0.0204 1.7704 -4.6539 13 7 1.6545 2.0982 1.2568 14 6 2.6431 1.8368 2.3115 15 6 2.2831 2.6258 3.5440 16 6 2.7857 3.9021 3.7170 17 6 2.4541 4.6320 4.8444 18 17 3.0813 6.2371 5.0551 19 6 1.6248 4.0795 5.8085 20 8 1.3013 4.7936 6.9200 21 6 1.1239 2.7932 5.6360 22 8 0.3097 2.2471 6.5785 23 6 -0.1677 0.9224 6.3347 24 6 1.4559 2.0696 4.5016 25 1 -0.3634 0.5916 -0.8403 26 1 -0.3634 0.4318 0.9325 27 1 -0.3633 -1.0236 -0.0922 28 1 1.8933 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.5606 0.3867 -3.5747 31 1 0.7319 1.8105 1.5465 32 1 2.6478 0.7732 2.5495 33 1 3.6322 2.1359 1.9647 34 1 3.4350 4.3317 2.9685 35 1 1.9127 4.6696 7.6589 36 1 -0.7413 0.9077 5.4079 37 1 0.6790 0.2413 6.2488 38 1 -0.8051 0.6080 7.1611 39 1 1.0678 1.0709 4.3655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:17 Heat of formation + Delta-G solvation = -65.067075 kcal Electronic energy + Delta-G solvation = -22016.119496 eV Core-core repulsion = 18564.105982 eV Total energy + Delta-G solvation = -3452.013514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54351 -38.10849 -37.37113 -36.49730 -35.93410 -32.79272 -31.12930 -30.14686 -29.41345 -27.57807 -26.38878 -24.33534 -23.24543 -22.46078 -21.40986 -19.37415 -18.75847 -17.53772 -16.80606 -16.15015 -16.10658 -15.33421 -15.08839 -14.81766 -14.79875 -14.27665 -13.99646 -13.39335 -13.15601 -12.76242 -12.53806 -12.45512 -12.23665 -11.98873 -11.90863 -11.71605 -11.35149 -11.08077 -10.93140 -10.76860 -10.69675 -10.63237 -10.55426 -10.03305 -9.84040 -9.63321 -9.03595 -8.65514 -8.37946 -8.20069 -7.31259 -6.00948 -4.02331 0.98460 1.24445 1.99510 3.15830 3.30208 3.38769 3.43055 3.45954 4.02411 4.42893 4.68921 4.92469 4.99222 5.02228 5.11043 5.24409 5.31143 5.33709 5.45937 5.52814 5.81430 5.98402 6.05492 6.11850 6.27034 6.30749 6.46457 6.49617 6.59538 6.81515 7.04199 7.19723 7.20477 7.45891 7.57747 7.63525 7.85284 8.21664 8.44914 8.54866 9.03816 9.61628 11.06074 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.003887 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.051388 B = 7201.600754 C = 8328.460306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.488 4.488 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.094 3.906 15 C -0.018 4.018 16 C -0.112 4.112 17 C -0.024 4.024 18 Cl -0.055 7.055 19 C 0.070 3.930 20 O -0.475 6.475 21 C 0.114 3.886 22 O -0.307 6.307 23 C 0.025 3.975 24 C -0.188 4.188 25 H 0.070 0.930 26 H 0.026 0.974 27 H 0.023 0.977 28 H 0.010 0.990 29 H 0.094 0.906 30 H 0.259 0.741 31 H 0.328 0.672 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.383 0.617 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 1.153 18.055 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.308 5.308 14 C -0.036 4.036 15 C -0.019 4.019 16 C -0.131 4.131 17 C -0.051 4.051 18 Cl -0.026 7.026 19 C 0.023 3.977 20 O -0.284 6.284 21 C 0.068 3.932 22 O -0.220 6.220 23 C -0.070 4.070 24 C -0.207 4.207 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.146 0.854 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.160 0.840 35 H 0.237 0.763 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.315 2.076 17.572 17.697 hybrid contribution -0.171 -0.835 -0.491 0.983 sum -0.486 1.242 17.081 17.133 Atomic orbital electron populations 1.21605 0.97665 0.98717 1.00791 1.22117 0.95036 1.01088 1.00300 1.19269 0.96118 0.88599 0.85257 0.94766 1.21092 1.30494 1.11517 0.89547 0.91896 1.24906 0.95515 0.95155 0.98739 1.69887 1.39081 1.23995 1.20644 0.86520 0.78991 0.79911 0.82497 1.19706 1.21162 1.21247 1.60870 1.03506 1.63327 1.03066 1.20930 0.98269 0.95377 0.89016 1.19831 0.93596 0.93632 0.94857 1.20860 1.02247 0.93827 0.96209 1.21004 0.98813 0.88084 0.97190 1.98363 1.85514 1.21610 1.97145 1.17199 1.00864 0.88946 0.90692 1.84935 1.53916 1.67229 1.22305 1.19092 0.93042 0.91487 0.89628 1.86112 1.61358 1.31299 1.43267 1.23120 0.99306 0.81416 1.03208 1.21185 1.03386 1.01581 0.94564 0.91130 0.95504 0.95746 0.97141 0.88774 0.93154 0.85369 0.95044 0.90158 0.84004 0.76260 0.92246 0.92530 0.88133 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.40 37.16 0.35 -2.31 16 2 C -0.15 -3.24 5.51 -26.73 -0.15 -3.39 16 3 C 0.21 5.05 2.33 -68.86 -0.16 4.89 16 4 H 0.03 0.89 7.70 -51.93 -0.40 0.49 16 5 C -0.49 -12.81 7.25 -34.44 -0.25 -13.06 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.53 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -24.64 11.38 55.43 0.63 -24.01 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -13.52 6.19 -109.22 -0.68 -14.19 16 14 C 0.09 1.55 5.63 -4.97 -0.03 1.52 16 15 C -0.02 -0.27 5.44 -104.62 -0.57 -0.83 16 16 C -0.11 -1.62 9.47 -39.54 -0.37 -2.00 16 17 C -0.02 -0.33 6.33 -39.39 -0.25 -0.58 16 18 Cl -0.06 -0.70 28.50 -51.86 -1.48 -2.18 16 19 C 0.07 0.95 6.71 -39.10 -0.26 0.69 16 20 O -0.48 -5.88 12.75 -34.33 -0.44 -6.32 16 21 C 0.11 1.52 6.70 -39.12 -0.26 1.26 16 22 O -0.31 -3.78 10.28 -34.24 -0.35 -4.13 16 23 C 0.02 0.21 9.81 101.05 0.99 1.20 16 24 C -0.19 -2.50 8.69 -39.46 -0.34 -2.84 16 25 H 0.07 1.60 6.85 -51.93 -0.36 1.24 16 26 H 0.03 0.48 6.63 -51.93 -0.34 0.14 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.01 0.20 7.50 -51.93 -0.39 -0.19 16 29 H 0.09 2.38 6.22 -51.93 -0.32 2.05 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.33 6.34 6.69 -39.30 -0.26 6.08 16 32 H 0.03 0.50 7.48 -51.93 -0.39 0.11 16 33 H 0.08 1.34 7.86 -51.93 -0.41 0.94 16 34 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.38 3.00 9.06 45.56 0.41 3.41 16 36 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.14 1.57 6.30 -52.48 -0.33 1.24 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -29.09 336.62 -8.06 -37.15 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.40 Total: 6.62 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.40 Total: -14.01 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.05 Total: -38.20 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.79 Total: -10.45 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.09 -8.06 -37.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.915 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds