Wall clock time and date at job start Fri Apr 10 2020 20:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46865 * 2 1 4 4 H 1.08998 * 109.46954 * 185.16098 * 3 2 1 5 5 C 1.50702 * 109.47089 * 305.15820 * 3 2 1 6 6 H 1.08001 * 120.00486 * 119.99838 * 5 3 2 7 7 C 1.37881 * 119.99935 * 300.00053 * 5 3 2 8 8 N 1.31519 * 120.00048 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99959 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46922 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46797 * 120.00166 * 9 7 5 12 12 H 1.48498 * 109.47198 * 240.00252 * 9 7 5 13 13 N 1.46903 * 109.47314 * 65.15503 * 3 2 1 14 14 C 1.46903 * 110.99330 * 85.90271 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.80951 * 14 13 3 16 16 C 1.38262 * 119.91884 * 269.71903 * 15 14 13 17 17 C 1.38337 * 120.12854 * 179.76657 * 16 15 14 18 18 Cl 1.73601 * 120.00897 * 180.27418 * 17 16 15 19 19 C 1.38656 * 119.98114 * 0.51222 * 17 16 15 20 20 O 1.36019 * 120.07938 * 179.76873 * 19 17 16 21 21 C 1.39116 * 119.84670 * 359.74405 * 19 17 16 22 22 O 1.35991 * 120.06445 * 180.02562 * 21 19 17 23 23 C 1.42900 * 116.99711 * 179.97438 * 22 21 19 24 24 C 1.38221 * 119.92714 * 89.99887 * 15 14 13 25 25 H 1.09007 * 109.47111 * 54.85310 * 1 2 3 26 26 H 1.08998 * 109.47521 * 294.84926 * 1 2 3 27 27 H 1.09005 * 109.47086 * 174.85061 * 1 2 3 28 28 H 1.08995 * 109.46923 * 119.99135 * 2 1 3 29 29 H 1.08993 * 109.47489 * 240.00124 * 2 1 3 30 30 H 0.97001 * 119.99591 * 179.97438 * 8 7 5 31 31 H 1.00893 * 110.99853 * 321.94571 * 13 3 2 32 32 H 1.08994 * 109.46864 * 294.80116 * 14 13 3 33 33 H 1.08994 * 109.47486 * 54.80803 * 14 13 3 34 34 H 1.08001 * 119.93300 * 0.02740 * 16 15 14 35 35 H 0.96703 * 113.99598 * 269.97426 * 20 19 17 36 36 H 1.09002 * 109.47368 * 300.00306 * 23 22 21 37 37 H 1.08999 * 109.46731 * 60.00664 * 23 22 21 38 38 H 1.09002 * 109.47131 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.98811 * 359.95398 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1616 6 1 0.8267 3.0627 -0.9841 7 6 1.6611 1.7559 -2.4512 8 7 2.4026 0.6914 -2.6675 9 14 0.9119 2.6806 -3.8911 10 1 0.1257 3.8336 -3.3836 11 1 1.9946 3.1731 -4.7803 12 1 0.0204 1.7704 -4.6539 13 7 1.6545 2.0982 1.2568 14 6 2.6431 1.8368 2.3115 15 6 2.2831 2.6258 3.5440 16 6 2.7857 3.9021 3.7170 17 6 2.4541 4.6320 4.8444 18 17 3.0813 6.2371 5.0551 19 6 1.6248 4.0795 5.8085 20 8 1.3013 4.7936 6.9200 21 6 1.1239 2.7932 5.6360 22 8 0.3097 2.2471 6.5785 23 6 -0.1677 0.9224 6.3347 24 6 1.4559 2.0696 4.5016 25 1 -0.3634 0.5916 -0.8403 26 1 -0.3634 0.4318 0.9325 27 1 -0.3633 -1.0236 -0.0922 28 1 1.8933 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.5606 0.3867 -3.5747 31 1 0.7319 1.8105 1.5465 32 1 2.6478 0.7732 2.5495 33 1 3.6322 2.1359 1.9647 34 1 3.4350 4.3317 2.9685 35 1 1.9127 4.6696 7.6589 36 1 -0.7413 0.9077 5.4079 37 1 0.6790 0.2413 6.2488 38 1 -0.8051 0.6080 7.1611 39 1 1.0678 1.0709 4.3655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:17 Heat of formation + Delta-G solvation = -84.023150 kcal Electronic energy + Delta-G solvation = -22016.941493 eV Core-core repulsion = 18564.105982 eV Total energy + Delta-G solvation = -3452.835511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53622 -39.09325 -38.66023 -37.60819 -37.25251 -34.50604 -32.78662 -31.17865 -30.70750 -28.59352 -27.96699 -25.81728 -24.95760 -23.45561 -22.55718 -21.17802 -19.73513 -18.64779 -17.94900 -17.82126 -17.03298 -16.76184 -16.35067 -16.21106 -16.08808 -15.43834 -15.24037 -14.76661 -14.66828 -14.29527 -13.89366 -13.80030 -13.46156 -13.38944 -12.92150 -12.82544 -12.73782 -12.62496 -12.42593 -12.39213 -12.06220 -11.80906 -11.77537 -11.67672 -11.54911 -11.39247 -10.94456 -10.41239 -9.71283 -9.22922 -8.91902 -8.03992 -6.11305 -0.06836 0.18923 0.97079 1.42068 1.46060 1.56424 2.29210 2.38335 2.48800 3.06899 3.25390 3.57083 3.93869 3.95932 4.00642 4.19411 4.35384 4.39492 4.47228 4.57744 4.58546 4.66591 4.72055 4.75598 4.84120 4.92378 5.01401 5.12372 5.36079 5.39749 5.44965 5.49467 5.73509 5.77900 5.85944 6.18191 6.34279 6.68224 6.75332 6.84368 7.00891 7.56342 9.01168 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.003887 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.051388 B = 7201.600754 C = 8328.460306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.139 4.139 3 C 0.221 3.779 4 H 0.003 0.997 5 C -0.497 4.497 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.683 5.683 14 C 0.100 3.900 15 C -0.029 4.029 16 C -0.121 4.121 17 C -0.031 4.031 18 Cl -0.049 7.049 19 C 0.070 3.930 20 O -0.484 6.484 21 C 0.112 3.888 22 O -0.318 6.318 23 C 0.015 3.985 24 C -0.181 4.181 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.258 0.742 31 H 0.334 0.666 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.403 0.597 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 0.863 19.526 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.536 4.536 6 H 0.068 0.932 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.314 5.314 14 C -0.029 4.029 15 C -0.030 4.030 16 C -0.140 4.140 17 C -0.058 4.058 18 Cl -0.020 7.020 19 C 0.023 3.977 20 O -0.295 6.295 21 C 0.065 3.935 22 O -0.231 6.231 23 C -0.079 4.079 24 C -0.200 4.200 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.152 0.848 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.155 0.845 35 H 0.261 0.739 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.352 1.786 19.073 19.205 hybrid contribution 0.150 -0.730 -0.813 1.103 sum -1.202 1.055 18.261 18.331 Atomic orbital electron populations 1.21492 0.96065 0.99582 1.00831 1.21955 0.96391 0.99834 0.99669 1.18996 0.93935 0.89471 0.86293 0.97918 1.21301 1.30179 1.11236 0.90869 0.93217 1.25517 0.95974 0.95857 1.00831 1.70003 1.40029 1.25006 1.20928 0.85680 0.78227 0.78855 0.79900 1.19631 1.21136 1.20804 1.60693 1.04519 1.63192 1.02972 1.20847 0.96914 0.96407 0.88766 1.19610 0.94996 0.93720 0.94644 1.20867 1.02557 0.94072 0.96546 1.21022 0.99186 0.88445 0.97163 1.98361 1.85457 1.21100 1.97106 1.17318 1.00259 0.89139 0.90958 1.84872 1.54814 1.67140 1.22691 1.19136 0.93055 0.91477 0.89800 1.86111 1.60956 1.33058 1.42984 1.23428 1.00146 0.79936 1.04432 1.21293 1.02519 1.02254 0.93966 0.93830 0.93176 0.93913 0.95071 0.92003 0.93253 0.84768 0.93867 0.91074 0.84504 0.73925 0.92091 0.91317 0.85757 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.40 71.98 0.68 -4.13 16 2 C -0.14 -6.10 5.51 30.59 0.17 -5.93 16 3 C 0.22 10.48 2.33 44.17 0.10 10.59 16 4 H 0.00 0.15 7.70 -2.39 -0.02 0.13 16 5 C -0.50 -26.39 7.25 25.60 0.19 -26.21 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.02 0.88 5.28 84.65 0.45 1.33 16 8 N -0.92 -51.25 11.38 21.45 0.24 -51.01 16 9 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.68 -26.91 6.19 -499.45 -3.09 -30.01 16 14 C 0.10 3.22 5.63 85.56 0.48 3.71 16 15 C -0.03 -0.81 5.44 -19.86 -0.11 -0.92 16 16 C -0.12 -3.44 9.47 22.30 0.21 -3.23 16 17 C -0.03 -0.82 6.33 22.39 0.14 -0.68 16 18 Cl -0.05 -1.21 28.50 -2.72 -0.08 -1.29 16 19 C 0.07 1.80 6.71 22.58 0.15 1.95 16 20 O -0.48 -11.06 12.75 -79.88 -1.02 -12.07 16 21 C 0.11 2.77 6.70 22.57 0.15 2.92 16 22 O -0.32 -7.02 10.28 -79.56 -0.82 -7.83 16 23 C 0.01 0.21 9.81 113.37 1.11 1.32 16 24 C -0.18 -4.44 8.69 22.35 0.19 -4.24 16 25 H 0.04 1.94 6.85 -2.38 -0.02 1.92 16 26 H 0.05 1.70 6.63 -2.39 -0.02 1.69 16 27 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.03 1.21 7.50 -2.39 -0.02 1.19 16 29 H 0.06 3.14 6.22 -2.39 -0.01 3.13 16 30 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 31 H 0.33 12.40 6.69 -89.70 -0.60 11.80 16 32 H 0.04 1.30 7.48 -2.39 -0.02 1.28 16 33 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16 34 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.40 5.49 9.06 -74.06 -0.67 4.82 16 36 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 37 H 0.07 0.81 7.66 -2.39 -0.02 0.80 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.15 3.11 6.30 -2.91 -0.02 3.09 16 Total: -1.00 -61.82 336.62 1.00 -60.82 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -0.18 Total: 19.50 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 3.92 Total: -23.52 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.85 Total: -81.01 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -1.84 Total: -19.91 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -61.82 1.00 -60.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.200 kcal (2) G-P(sol) polarization free energy of solvation -61.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds