Wall clock time and date at job start Fri Apr 10 2020 20:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35968 * 116.99532 * 2 1 4 4 C 1.37576 * 120.82444 * 180.26527 * 3 2 1 5 5 C 1.38036 * 114.24818 * 180.24060 * 4 3 2 6 6 C 1.47111 * 127.75959 * 179.81220 * 5 4 3 7 7 O 1.21631 * 119.99806 * 359.69620 * 6 5 4 8 8 N 1.34781 * 120.00123 * 179.70689 * 6 5 4 9 9 C 1.46501 * 120.00018 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47260 * 179.97438 * 9 8 6 11 11 H 1.09008 * 109.46970 * 304.99798 * 10 9 8 12 12 C 1.53001 * 109.47368 * 64.99377 * 10 9 8 13 13 C 1.52997 * 109.47404 * 184.99847 * 10 9 8 14 14 N 1.46505 * 109.47212 * 174.99693 * 13 10 9 15 15 C 1.36936 * 119.99992 * 179.97438 * 14 13 10 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00093 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46725 * 59.99976 * 19 17 15 21 21 H 1.48498 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46920 * 300.00189 * 19 17 15 23 23 S 1.77231 * 104.48039 * 359.54501 * 5 4 3 24 24 N 1.30360 * 120.82798 * 359.97312 * 3 2 1 25 25 H 1.09003 * 109.46837 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47350 * 300.00001 * 1 2 3 27 27 H 1.08999 * 109.47472 * 60.00356 * 1 2 3 28 28 H 1.07998 * 122.87457 * 0.08524 * 4 3 2 29 29 H 0.96994 * 119.99539 * 359.97438 * 8 6 5 30 30 H 1.09001 * 109.46980 * 59.99210 * 9 8 6 31 31 H 1.09009 * 109.46889 * 299.99719 * 9 8 6 32 32 H 1.08996 * 109.47271 * 300.00893 * 12 10 9 33 33 H 1.09008 * 109.46731 * 60.00275 * 12 10 9 34 34 H 1.08998 * 109.47430 * 180.02562 * 12 10 9 35 35 H 1.09002 * 109.47153 * 54.99686 * 13 10 9 36 36 H 1.09001 * 109.46832 * 294.99876 * 13 10 9 37 37 H 0.96996 * 119.99606 * 0.02562 * 14 13 10 38 38 H 0.97001 * 120.00803 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4189 1.3034 -0.0055 5 6 3.9005 2.5970 0.0005 6 6 5.3047 3.0355 0.0009 7 8 6.1991 2.2112 0.0011 8 7 5.6001 4.3505 0.0013 9 6 6.9986 4.7871 0.0023 10 6 7.0556 6.3160 0.0019 11 1 6.4807 6.7008 -0.8405 12 6 6.4642 6.8487 1.3086 13 6 8.5106 6.7721 -0.1228 14 7 8.5563 8.2315 -0.2433 15 6 9.7608 8.8709 -0.3671 16 1 10.6772 8.2993 -0.3763 17 6 9.8042 10.2536 -0.4807 18 7 8.6875 10.9502 -0.4689 19 14 11.4473 11.1259 -0.6503 20 1 12.1398 10.6436 -1.8722 21 1 11.2221 12.5899 -0.7548 22 1 12.2862 10.8373 0.5406 23 16 2.4469 3.6111 -0.0003 24 7 1.3520 2.3149 -0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.0643 0.4376 -0.0113 29 1 4.8868 5.0077 0.0010 30 1 7.4991 4.4049 -0.8874 31 1 7.4980 4.4047 0.8926 32 1 5.4277 6.5237 1.3975 33 1 7.0391 6.4639 2.1511 34 1 6.5044 7.9380 1.3082 35 1 8.9585 6.3203 -1.0079 36 1 9.0654 6.4631 0.7632 37 1 7.7333 8.7448 -0.2346 38 1 8.7177 11.9165 -0.5480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753613767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:50 Heat of formation + Delta-G solvation = -19.667565 kcal Electronic energy + Delta-G solvation = -20827.224349 eV Core-core repulsion = 17411.515964 eV Total energy + Delta-G solvation = -3415.708386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63850 -39.84262 -37.14339 -36.64731 -34.51915 -32.69418 -31.66413 -30.08618 -28.52193 -26.91039 -25.77765 -24.50742 -22.64681 -21.67038 -20.62746 -19.81510 -18.93688 -18.11183 -17.15147 -16.66867 -16.53484 -16.19255 -15.66745 -15.13493 -14.80206 -14.46383 -14.18118 -13.80809 -13.76937 -13.63387 -13.10491 -12.71149 -12.48981 -12.39407 -12.11227 -11.83766 -11.54825 -11.26756 -11.10186 -10.94510 -10.75405 -10.63918 -10.53947 -10.35645 -10.14063 -10.05578 -9.69998 -9.27696 -8.88999 -8.81164 -6.94443 -5.78416 -3.07122 -0.26284 0.74727 1.11739 1.82134 2.45912 2.75908 3.00682 3.43842 3.48228 3.49159 4.17898 4.54352 4.57282 4.71013 4.81011 4.81807 4.95826 5.11368 5.13510 5.28688 5.31283 5.55806 5.65730 5.72484 5.86824 5.88937 6.01609 6.14805 6.27232 6.36223 6.57097 6.61354 6.72684 6.81728 7.14330 7.68594 7.79441 8.40593 9.51888 10.08640 10.43322 11.44403 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.045267 B = 0.002298 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.398323 B =12180.962543 C =12638.454079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.294 6.294 3 C 0.305 3.695 4 C -0.129 4.129 5 C -0.179 4.179 6 C 0.591 3.409 7 O -0.515 6.515 8 N -0.712 5.712 9 C 0.126 3.874 10 C -0.112 4.112 11 H 0.079 0.921 12 C -0.144 4.144 13 C 0.161 3.839 14 N -0.731 5.731 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 S 0.291 5.709 24 N -0.510 5.510 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.179 0.821 29 H 0.401 0.599 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.384 0.616 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 -19.728 1.802 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.200 6.200 3 C 0.092 3.908 4 C -0.167 4.167 5 C -0.311 4.311 6 C 0.373 3.627 7 O -0.391 6.391 8 N -0.363 5.363 9 C 0.003 3.997 10 C -0.131 4.131 11 H 0.097 0.903 12 C -0.201 4.201 13 C 0.033 3.967 14 N -0.375 5.375 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 S 0.440 5.560 24 N -0.351 5.351 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.196 0.804 29 H 0.236 0.764 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.218 0.782 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.804 -18.932 1.788 26.050 hybrid contribution 0.909 -0.335 -0.108 0.974 sum -16.896 -19.267 1.679 25.681 Atomic orbital electron populations 1.23010 0.76514 1.03775 1.02673 1.86323 1.23149 1.22396 1.88134 1.19922 0.89807 0.85336 0.95737 1.20778 0.92349 0.98645 1.04882 1.26058 0.99454 0.97798 1.07788 1.16638 0.85221 0.83135 0.77658 1.90867 1.46634 1.52552 1.49076 1.45933 1.10413 1.05909 1.74040 1.21571 0.79903 0.95144 1.03077 1.21584 0.99896 0.92251 0.99396 0.90301 1.21818 0.98842 1.02872 0.96566 1.20569 0.91212 0.86827 0.98129 1.42322 1.06681 0.99863 1.88661 1.19184 0.86021 0.89743 1.42165 0.91181 1.24737 0.96980 0.96336 1.02944 1.69641 1.25150 1.06046 1.57460 0.86251 0.83266 0.78633 0.77934 1.21263 1.21706 1.21258 1.85063 0.89902 1.11945 1.69052 1.76457 1.26660 1.01063 1.30957 0.87861 0.92017 0.92006 0.80372 0.76382 0.90616 0.90616 0.93929 0.92635 0.90930 0.96022 0.95892 0.78178 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.43 101.05 1.05 1.27 16 2 O -0.29 -2.67 10.51 -19.64 -0.21 -2.88 16 3 C 0.31 3.07 7.36 -18.42 -0.14 2.93 16 4 C -0.13 -1.28 10.09 -39.90 -0.40 -1.69 16 5 C -0.18 -1.85 6.74 -36.06 -0.24 -2.09 16 6 C 0.59 7.19 7.80 -12.66 -0.10 7.09 16 7 O -0.51 -7.91 16.95 5.25 0.09 -7.82 16 8 N -0.71 -7.83 5.28 -61.48 -0.32 -8.15 16 9 C 0.13 1.59 5.06 -4.04 -0.02 1.56 16 10 C -0.11 -1.61 2.46 -90.62 -0.22 -1.84 16 11 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 12 C -0.14 -1.99 8.94 37.16 0.33 -1.66 16 13 C 0.16 3.05 5.65 -4.04 -0.02 3.03 16 14 N -0.73 -17.83 5.33 -59.91 -0.32 -18.15 16 15 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 16 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 19 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 S 0.29 2.63 23.27 -107.50 -2.50 0.13 16 24 N -0.51 -5.27 11.03 29.19 0.32 -4.95 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 28 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.40 3.66 7.01 -40.82 -0.29 3.37 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 33 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.38 9.75 6.85 -40.82 -0.28 9.47 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -32.27 342.00 -7.18 -39.45 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.08 Total: 5.73 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.01 Total: 1.35 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.40 Total: -58.31 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.12 Total: -10.70 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.50 Total: 0.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.27 -7.18 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753613767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.779 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds