Wall clock time and date at job start Fri Apr 10 2020 20:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46843 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99570 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00351 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00067 * 14 12 10 16 16 H 1.48501 * 109.47216 * 209.99924 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00265 * 14 12 10 18 18 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 19 19 C 1.38826 * 120.80899 * 284.72238 * 18 2 1 20 20 F 1.35096 * 120.42710 * 359.97438 * 19 18 2 21 21 C 1.38460 * 119.13837 * 179.78150 * 19 18 2 22 22 N 1.31845 * 120.78253 * 0.50463 * 21 19 18 23 23 C 1.31852 * 121.77446 * 359.73934 * 22 21 19 24 24 C 1.38453 * 120.78510 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.43165 * 179.97438 * 24 23 22 26 26 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 28 28 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 29 29 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 30 30 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 31 31 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 32 32 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 33 33 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 34 34 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 35 35 H 0.96996 * 120.00389 * 180.02562 * 13 12 10 36 36 H 1.07995 * 119.60647 * 180.25093 * 21 19 18 37 37 H 1.08000 * 119.60787 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2436 -0.8731 5.8060 10 6 3.3809 -0.1229 7.1057 11 1 3.1244 0.9251 7.1540 12 6 3.8339 -0.7745 8.2331 13 7 4.1458 -2.0508 8.1744 14 14 4.0048 0.1556 9.8441 15 1 2.7331 0.0648 10.6054 16 1 5.1047 -0.4395 10.6450 17 1 4.3126 1.5808 9.5627 18 6 2.0324 -0.7104 -1.2304 19 6 1.9838 -2.0948 -1.3218 20 9 1.4838 -2.8304 -0.3050 21 6 2.4506 -2.7114 -2.4702 22 7 2.9456 -2.0006 -3.4642 23 6 3.0124 -0.6848 -3.4109 24 6 2.5608 0.0032 -2.2975 25 9 2.6331 1.3513 -2.2503 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 2.2490 -1.6317 1.1527 30 1 2.8216 -1.5960 3.4155 31 1 3.4269 0.8985 4.5936 32 1 1.7531 0.4685 5.0195 33 1 2.5412 -1.6967 5.9346 34 1 4.2154 -1.2673 5.5090 35 1 4.4642 -2.5093 8.9677 36 1 2.4126 -3.7877 -2.5510 37 1 3.4242 -0.1372 -4.2458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286618708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:04 Heat of formation + Delta-G solvation = -90.908792 kcal Electronic energy + Delta-G solvation = -23592.385888 eV Core-core repulsion = 19619.747864 eV Total energy + Delta-G solvation = -3972.638024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.68229 -49.56062 -40.65728 -39.65514 -36.42842 -34.71462 -33.00859 -32.46011 -31.23991 -30.34189 -29.01476 -25.43486 -24.62843 -24.12053 -22.20985 -20.98792 -20.64659 -18.85934 -18.60607 -18.15125 -17.09200 -16.71723 -16.43668 -16.30625 -15.93394 -15.73778 -15.21823 -14.93247 -14.53047 -14.35543 -14.20901 -13.95396 -13.76087 -13.54613 -13.35554 -12.84960 -12.70716 -12.34516 -12.22229 -11.63153 -11.19458 -11.03571 -10.63436 -10.41807 -10.33654 -10.19067 -9.98152 -9.56901 -9.50547 -9.26846 -9.19775 -8.50410 -8.29555 -6.09193 -4.11909 0.15018 0.21466 2.73664 2.95259 3.14846 3.29825 3.35950 3.40479 3.46835 3.48552 3.71236 3.81939 4.03759 4.39116 4.45004 4.61216 4.81815 4.94511 4.98064 5.10873 5.19288 5.27959 5.44413 5.66512 5.89071 6.00828 6.26731 6.38537 6.43270 6.76260 6.96041 7.04660 7.14233 7.55759 7.62817 7.89793 8.24013 8.37038 8.89498 8.95468 9.52873 11.02484 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.002774 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.631892 B =10090.444978 C =10491.198906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.110 0.890 4 N -0.751 5.751 5 C 0.702 3.298 6 O -0.594 6.594 7 N -0.736 5.736 8 C 0.140 3.860 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.119 4.119 19 C 0.086 3.914 20 F -0.113 7.113 21 C 0.068 3.932 22 N -0.429 5.429 23 C 0.068 3.932 24 C 0.093 3.907 25 F -0.113 7.113 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.396 0.604 30 H 0.394 0.606 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.179 0.821 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.642 -1.901 -25.008 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.097 3.903 3 H 0.128 0.872 4 N -0.410 5.410 5 C 0.402 3.598 6 O -0.473 6.473 7 N -0.389 5.389 8 C 0.017 3.983 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.129 4.129 19 C 0.064 3.936 20 F -0.091 7.091 21 C -0.090 4.090 22 N -0.136 5.136 23 C -0.091 4.091 24 C 0.071 3.929 25 F -0.092 7.092 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.232 0.768 30 H 0.227 0.773 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.196 0.804 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.539 -1.341 -25.492 25.928 hybrid contribution -0.024 -0.020 1.828 1.828 sum -4.563 -1.360 -23.664 24.139 Atomic orbital electron populations 1.22206 0.93308 1.02832 1.03494 1.19438 0.94778 0.96889 0.79159 0.87180 1.45287 1.73107 1.13903 1.08683 1.15991 0.78532 0.85123 0.80184 1.90895 1.57420 1.14335 1.84634 1.45540 1.69716 1.13983 1.09660 1.21623 1.00507 0.95634 0.80502 1.19329 0.96617 0.94615 0.91908 1.21049 1.44462 0.96653 0.93791 0.92200 1.24996 0.95173 0.94926 0.99206 1.69953 1.44719 1.09138 1.29532 0.86507 0.77766 0.80066 0.83189 1.20557 1.21180 1.19708 1.20783 1.00988 0.93091 0.98035 1.18459 0.99321 0.88264 0.87537 1.91520 1.84563 1.76012 1.57046 1.23066 0.96309 1.01885 0.87757 1.67811 1.12114 1.06559 1.27072 1.23065 0.98593 0.90413 0.97001 1.18410 1.00472 0.78609 0.95449 1.91592 1.93731 1.27482 1.96348 0.92015 0.90256 0.91515 0.76823 0.77330 0.92698 0.92669 0.95940 0.95968 0.92852 0.80402 0.80391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.43 37.16 0.35 -1.35 16 2 C 0.20 2.39 2.63 -69.08 -0.18 2.21 16 3 H 0.11 1.49 6.81 -51.93 -0.35 1.13 16 4 N -0.75 -10.02 4.90 -59.81 -0.29 -10.31 16 5 C 0.70 12.40 8.53 -86.92 -0.74 11.66 16 6 O -0.59 -12.62 16.01 5.28 0.08 -12.54 16 7 N -0.74 -13.21 5.56 -65.22 -0.36 -13.57 16 8 C 0.14 3.03 5.61 -4.04 -0.02 3.00 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 14 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.12 -1.13 4.97 -104.19 -0.52 -1.64 16 19 C 0.09 0.72 6.93 -39.28 -0.27 0.45 16 20 F -0.11 -0.99 14.55 2.25 0.03 -0.96 16 21 C 0.07 0.48 11.17 -17.46 -0.20 0.29 16 22 N -0.43 -3.38 10.36 -13.14 -0.14 -3.52 16 23 C 0.07 0.48 11.17 -17.46 -0.20 0.29 16 24 C 0.09 0.80 7.29 -39.29 -0.29 0.51 16 25 F -0.11 -1.08 16.40 2.25 0.04 -1.04 16 26 H 0.06 0.61 7.84 -51.93 -0.41 0.20 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.40 4.54 6.25 -40.82 -0.25 4.29 16 30 H 0.39 6.14 8.49 -40.82 -0.35 5.80 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -32.44 329.71 -6.85 -39.29 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.29 Total: 4.39 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -2.61 Total: 2.32 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.06 Total: -52.85 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.07 Total: -2.00 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.44 -6.85 -39.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286618708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.617 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds