Wall clock time and date at job start Fri Apr 10 2020 20:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 5 5 C 1.34773 * 120.00431 * 275.00470 * 4 2 1 6 6 O 1.21593 * 119.99894 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00097 * 179.72742 * 5 4 2 8 8 C 1.46504 * 119.99854 * 180.27545 * 7 5 4 9 9 C 1.53004 * 109.46928 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46843 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99981 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99570 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00351 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00067 * 14 12 10 16 16 H 1.48501 * 109.47216 * 209.99924 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00265 * 14 12 10 18 18 C 1.50691 * 109.47321 * 239.99926 * 2 1 3 19 19 C 1.38826 * 120.80899 * 284.72238 * 18 2 1 20 20 F 1.35096 * 120.42710 * 359.97438 * 19 18 2 21 21 C 1.38460 * 119.13837 * 179.78150 * 19 18 2 22 22 N 1.31845 * 120.78253 * 0.50463 * 21 19 18 23 23 C 1.31852 * 121.77446 * 359.73934 * 22 21 19 24 24 C 1.38453 * 120.78510 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.43165 * 179.97438 * 24 23 22 26 26 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 28 28 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 29 29 H 0.97000 * 119.99456 * 95.00032 * 4 2 1 30 30 H 0.97000 * 119.99736 * 0.26819 * 7 5 4 31 31 H 1.08998 * 109.46968 * 299.99782 * 8 7 5 32 32 H 1.08997 * 109.47198 * 59.99605 * 8 7 5 33 33 H 1.09007 * 109.46621 * 299.99773 * 9 8 7 34 34 H 1.08997 * 109.46991 * 59.99522 * 9 8 7 35 35 H 0.96996 * 120.00389 * 180.02562 * 13 12 10 36 36 H 1.07995 * 119.60647 * 180.25093 * 21 19 18 37 37 H 1.08000 * 119.60787 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1617 2.4116 7 7 2.5910 -0.6548 3.4590 8 6 2.7250 0.0746 4.7225 9 6 3.2436 -0.8731 5.8060 10 6 3.3809 -0.1229 7.1057 11 1 3.1244 0.9251 7.1540 12 6 3.8339 -0.7745 8.2331 13 7 4.1458 -2.0508 8.1744 14 14 4.0048 0.1556 9.8441 15 1 2.7331 0.0648 10.6054 16 1 5.1047 -0.4395 10.6450 17 1 4.3126 1.5808 9.5627 18 6 2.0324 -0.7104 -1.2304 19 6 1.9838 -2.0948 -1.3218 20 9 1.4838 -2.8304 -0.3050 21 6 2.4506 -2.7114 -2.4702 22 7 2.9456 -2.0006 -3.4642 23 6 3.0124 -0.6848 -3.4109 24 6 2.5608 0.0032 -2.2975 25 9 2.6331 1.3513 -2.2503 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 2.2490 -1.6317 1.1527 30 1 2.8216 -1.5960 3.4155 31 1 3.4269 0.8985 4.5936 32 1 1.7531 0.4685 5.0195 33 1 2.5412 -1.6967 5.9346 34 1 4.2154 -1.2673 5.5090 35 1 4.4642 -2.5093 8.9677 36 1 2.4126 -3.7877 -2.5510 37 1 3.4242 -0.1372 -4.2458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286618708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:03 Heat of formation + Delta-G solvation = -113.195906 kcal Electronic energy + Delta-G solvation = -23593.352329 eV Core-core repulsion = 19619.747864 eV Total energy + Delta-G solvation = -3973.604466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.34590 -50.24896 -41.46747 -40.87660 -37.57371 -36.40159 -34.87331 -33.61303 -31.83256 -31.67430 -30.47580 -26.83160 -25.94226 -24.76891 -23.41657 -22.62365 -21.97777 -19.96899 -19.31201 -19.05838 -18.42585 -17.96376 -17.41954 -17.08634 -16.85115 -16.70294 -16.58361 -16.49032 -15.74500 -15.59248 -15.30216 -15.16387 -14.76107 -14.53318 -14.34291 -14.28308 -14.00486 -13.38829 -13.22945 -13.15872 -12.94754 -12.52832 -12.52612 -12.24253 -11.70825 -11.53628 -11.28150 -11.04074 -10.89644 -10.61343 -10.47745 -10.09349 -9.86636 -8.24246 -6.34605 -0.46767 -0.43320 1.41823 1.42586 1.53274 1.60184 2.05494 2.25585 2.41019 2.50410 2.83666 2.91119 3.10656 3.20804 3.27143 3.46231 3.82344 4.02959 4.05538 4.31747 4.37894 4.44848 4.50769 4.57364 4.64596 4.75829 4.85369 5.07420 5.27249 5.29880 5.34325 5.48583 5.58381 5.76639 5.90012 6.16270 6.46909 6.78474 6.98760 7.34704 7.48298 8.87729 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.002774 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.631892 B =10090.444978 C =10491.198906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.201 3.799 3 H 0.090 0.910 4 N -0.733 5.733 5 C 0.703 3.297 6 O -0.631 6.631 7 N -0.732 5.732 8 C 0.161 3.839 9 C 0.024 3.976 10 C -0.547 4.547 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.127 4.127 19 C 0.081 3.919 20 F -0.117 7.117 21 C 0.081 3.919 22 N -0.439 5.439 23 C 0.080 3.920 24 C 0.083 3.917 25 F -0.122 7.122 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.407 0.593 30 H 0.406 0.594 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.009 0.991 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.207 0.793 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 -2.420 -26.168 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.095 3.905 3 H 0.108 0.892 4 N -0.392 5.392 5 C 0.402 3.598 6 O -0.512 6.512 7 N -0.386 5.386 8 C 0.036 3.964 9 C -0.014 4.014 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.192 4.192 13 N -0.566 5.566 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.137 4.137 19 C 0.059 3.941 20 F -0.095 7.095 21 C -0.078 4.078 22 N -0.146 5.146 23 C -0.078 4.078 24 C 0.061 3.939 25 F -0.100 7.100 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.245 0.755 30 H 0.241 0.759 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.223 0.777 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.471 -1.899 -26.701 27.139 hybrid contribution -0.044 0.099 2.084 2.087 sum -4.515 -1.801 -24.616 25.092 Atomic orbital electron populations 1.22141 0.92432 1.03362 1.03287 1.19476 0.95526 0.96106 0.79374 0.89199 1.45144 1.71935 1.14280 1.07860 1.16050 0.78139 0.84692 0.80885 1.90870 1.58946 1.16090 1.85337 1.45238 1.70075 1.14435 1.08842 1.21112 0.99396 0.94661 0.81189 1.19129 0.95542 0.94460 0.92222 1.21462 1.44747 0.97012 0.95281 0.92240 1.25869 0.94639 0.95811 1.02837 1.70055 1.45284 1.10554 1.30719 0.85440 0.78038 0.78862 0.78685 1.19740 1.20506 1.19061 1.20611 1.02124 0.93677 0.97297 1.18511 0.99889 0.87691 0.88031 1.91509 1.84722 1.75989 1.57312 1.23494 0.94526 1.03094 0.86652 1.67927 1.12493 1.06832 1.27301 1.23479 0.97086 0.90274 0.96938 1.18540 1.01172 0.78308 0.95893 1.91572 1.93891 1.28142 1.96425 0.91042 0.92610 0.89559 0.75493 0.75853 0.93698 0.93586 0.97272 0.97325 0.92530 0.77676 0.77684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.43 71.98 0.68 -2.53 16 2 C 0.20 4.66 2.63 44.24 0.12 4.78 16 3 H 0.09 2.49 6.81 -2.39 -0.02 2.47 16 4 N -0.73 -19.32 4.90 -461.41 -2.26 -21.58 16 5 C 0.70 25.00 8.53 179.06 1.53 26.52 16 6 O -0.63 -27.35 16.01 -4.01 -0.06 -27.42 16 7 N -0.73 -26.41 5.56 -478.52 -2.66 -29.07 16 8 C 0.16 7.06 5.61 86.38 0.48 7.55 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C -0.55 -30.72 9.11 25.60 0.23 -30.49 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 12 C 0.01 0.41 5.46 84.65 0.46 0.87 16 13 N -0.93 -54.43 13.29 21.45 0.28 -54.15 16 14 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 C -0.13 -2.26 4.97 -19.59 -0.10 -2.36 16 19 C 0.08 1.19 6.93 22.46 0.16 1.35 16 20 F -0.12 -1.85 14.55 44.97 0.65 -1.19 16 21 C 0.08 0.92 11.17 84.74 0.95 1.87 16 22 N -0.44 -5.72 10.36 -195.48 -2.02 -7.75 16 23 C 0.08 0.95 11.17 84.74 0.95 1.90 16 24 C 0.08 1.32 7.29 22.46 0.16 1.48 16 25 F -0.12 -2.24 16.40 44.97 0.74 -1.51 16 26 H 0.07 1.34 7.84 -2.39 -0.02 1.32 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.41 8.96 6.25 -92.71 -0.58 8.38 16 30 H 0.41 12.58 8.49 -92.71 -0.79 11.80 16 31 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.21 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -69.48 329.71 2.23 -67.25 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.24 Total: 17.33 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 5.77 Total: 12.31 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -6.66 Total: -112.55 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.42 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 1.39 Total: -2.70 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.48 2.23 -67.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286618708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.947 kcal (2) G-P(sol) polarization free energy of solvation -69.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds