Wall clock time and date at job start Fri Apr 10 2020 20:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47395 * 180.02562 * 9 7 2 11 11 C 1.36342 * 125.86134 * 85.02124 * 10 9 7 12 12 C 1.35121 * 108.89503 * 179.97438 * 11 10 9 13 13 C 1.40978 * 108.24380 * 0.02562 * 12 11 10 14 14 N 1.33313 * 126.35897 * 180.02562 * 13 12 11 15 15 C 1.32906 * 119.99892 * 359.97044 * 14 13 12 16 16 O 1.21588 * 120.00121 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99799 * 179.97438 * 15 14 13 18 18 H 1.09003 * 110.43620 * 302.54181 * 17 15 14 19 19 C 1.54265 * 110.48364 * 180.02562 * 17 15 14 20 20 C 1.53875 * 106.60146 * 217.71231 * 19 17 15 21 21 C 1.54267 * 106.59328 * 0.02562 * 20 19 17 22 22 F 1.39907 * 110.48598 * 142.28767 * 21 20 19 23 23 F 1.39903 * 110.48829 * 264.79534 * 21 20 19 24 24 C 1.54886 * 104.20135 * 23.60989 * 21 20 19 25 25 N 1.37283 * 107.28466 * 359.75396 * 13 12 11 26 26 H 0.97003 * 126.34877 * 180.25530 * 25 13 12 27 27 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 29 29 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 30 30 H 1.07998 * 125.55198 * 359.97438 * 11 10 9 31 31 H 1.08005 * 125.88097 * 180.02562 * 12 11 10 32 32 H 1.08994 * 110.03462 * 336.99899 * 19 17 15 33 33 H 1.09008 * 110.03286 * 98.38213 * 19 17 15 34 34 H 1.09000 * 110.03263 * 119.28244 * 20 19 17 35 35 H 1.09004 * 110.03736 * 240.67221 * 20 19 17 36 36 H 1.08997 * 110.76046 * 203.74598 * 24 21 20 37 37 H 1.08999 * 110.75457 * 80.36572 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7950 -4.1574 1.1003 12 6 3.6084 -5.1624 0.7075 13 6 3.5360 -5.2656 -0.6966 14 7 4.1937 -6.1386 -1.4599 15 6 5.0134 -7.0236 -0.9019 16 8 5.1631 -7.0373 0.3046 17 6 5.7564 -8.0108 -1.7647 18 1 5.0568 -8.6023 -2.3552 19 6 6.6399 -8.9294 -0.8956 20 6 7.9398 -9.1643 -1.6848 21 6 7.8010 -8.3797 -3.0058 22 9 9.0262 -7.8093 -3.3675 23 9 7.3316 -9.2154 -4.0248 24 6 6.7630 -7.2759 -2.6848 25 7 2.6578 -4.3042 -1.1316 26 1 2.4009 -4.1341 -2.0513 27 1 -0.4850 -0.8401 0.0004 28 1 0.6247 -2.5570 0.8897 29 1 0.6242 -2.5567 -0.8903 30 1 2.6391 -3.8378 2.1200 31 1 4.2104 -5.7802 1.3574 32 1 6.8626 -8.4436 0.0544 33 1 6.1325 -9.8780 -0.7196 34 1 8.7932 -8.7924 -1.1179 35 1 8.0640 -10.2273 -1.8920 36 1 6.2727 -6.9301 -3.5948 37 1 7.2328 -6.4452 -2.1582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331085607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:23 Heat of formation + Delta-G solvation = -50.202974 kcal Electronic energy + Delta-G solvation = -23538.364073 eV Core-core repulsion = 19567.491186 eV Total energy + Delta-G solvation = -3970.872887 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.90578 -47.03454 -41.07076 -39.16584 -36.50032 -34.59598 -33.17852 -31.28750 -30.85007 -29.36454 -28.08969 -26.41406 -23.68947 -22.66205 -21.54440 -21.27731 -20.72888 -19.08264 -17.92077 -17.45090 -16.79826 -16.76759 -16.13049 -15.69730 -15.31844 -15.01131 -14.81290 -14.47402 -14.15746 -14.04168 -13.67323 -13.46479 -13.36660 -13.06545 -13.01957 -12.77378 -12.33909 -12.16486 -12.03008 -11.55508 -11.51440 -11.27784 -11.00312 -10.73578 -10.66369 -10.43893 -10.38695 -9.45655 -9.36229 -9.13505 -8.93011 -8.52070 -7.19399 -6.88369 -4.77096 1.44413 1.84032 2.78953 3.18629 3.19044 3.34819 3.64089 3.83137 3.95712 4.03745 4.12151 4.29355 4.40300 4.75935 4.80427 5.04019 5.04882 5.12202 5.27569 5.30355 5.37847 5.56250 5.62555 5.76416 5.79702 5.93751 6.05857 6.09389 6.17842 6.21673 6.36700 6.54418 7.17832 7.23576 7.39549 7.68708 7.92768 8.14158 8.20146 8.93777 9.18656 10.41817 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.002839 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.904252 B = 9860.277509 C =10369.279315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.032 3.968 3 Si 1.080 2.920 4 H -0.286 1.286 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.637 4.637 8 H 0.066 0.934 9 C 0.243 3.757 10 N -0.336 5.336 11 C 0.164 3.836 12 C -0.330 4.330 13 C 0.470 3.530 14 N -0.698 5.698 15 C 0.503 3.497 16 O -0.582 6.582 17 C -0.084 4.084 18 H 0.101 0.899 19 C -0.113 4.113 20 C -0.159 4.159 21 C 0.274 3.726 22 F -0.201 7.201 23 F -0.196 7.196 24 C -0.134 4.134 25 N -0.464 5.464 26 H 0.446 0.554 27 H 0.270 0.730 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.190 0.810 31 H 0.186 0.814 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.442 -12.534 -1.560 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.175 4.175 3 Si 0.907 3.093 4 H -0.211 1.211 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.675 4.675 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.121 5.121 11 C 0.018 3.982 12 C -0.362 4.362 13 C 0.221 3.779 14 N -0.463 5.463 15 C 0.288 3.712 16 O -0.465 6.465 17 C -0.105 4.105 18 H 0.119 0.881 19 C -0.151 4.151 20 C -0.197 4.197 21 C 0.238 3.762 22 F -0.181 7.181 23 F -0.177 7.177 24 C -0.172 4.172 25 N -0.185 5.185 26 H 0.293 0.707 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.203 0.797 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.014 -10.686 -1.938 13.497 hybrid contribution 0.168 -1.547 -0.121 1.560 sum 8.182 -12.233 -2.059 14.860 Atomic orbital electron populations 1.70829 1.06854 1.30754 1.44251 1.25989 0.96163 1.02959 0.92365 0.83351 0.74503 0.73871 0.77609 1.21124 1.20668 1.20793 1.22320 0.95569 0.90511 1.59118 0.91555 1.20133 0.86321 0.81312 0.99614 1.47762 1.39343 1.28322 0.96661 1.22911 0.91211 0.91926 0.92108 1.22494 1.11569 1.06980 0.95189 1.19243 0.83923 0.84777 0.89959 1.68744 1.24530 1.15802 1.37177 1.20364 0.80931 0.83287 0.86652 1.90524 1.65893 1.72773 1.17274 1.21611 0.96571 0.95879 0.96448 0.88065 1.22085 0.93153 1.00049 0.99826 1.23136 1.01235 1.01500 0.93822 1.22064 0.80303 0.88644 0.85162 1.92992 1.46286 1.85603 1.93265 1.92996 1.88542 1.73097 1.63076 1.23240 0.95174 0.96730 1.02067 1.44578 1.41219 1.29105 1.03645 0.70657 0.91997 0.92332 0.93959 0.79360 0.79721 0.88648 0.90685 0.88657 0.89299 0.88282 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.98 13.65 55.43 0.76 -22.22 16 2 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 3 Si 1.08 22.08 29.90 -169.99 -5.08 17.00 16 4 H -0.29 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.64 -14.94 9.39 -34.44 -0.32 -15.26 16 8 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.24 4.84 5.50 -5.19 -0.03 4.81 16 10 N -0.34 -5.97 3.63 -62.23 -0.23 -6.20 16 11 C 0.16 2.63 11.46 -16.66 -0.19 2.44 16 12 C -0.33 -5.78 9.51 -39.65 -0.38 -6.16 16 13 C 0.47 8.61 8.07 -155.18 -1.25 7.35 16 14 N -0.70 -12.82 10.49 -11.59 -0.12 -12.94 16 15 C 0.50 8.84 7.01 -11.81 -0.08 8.76 16 16 O -0.58 -11.26 12.33 5.29 0.07 -11.19 16 17 C -0.08 -1.15 3.33 -90.10 -0.30 -1.45 16 18 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 19 C -0.11 -1.32 6.18 -25.61 -0.16 -1.48 16 20 C -0.16 -1.61 6.41 -25.61 -0.16 -1.78 16 21 C 0.27 3.31 2.49 -25.07 -0.06 3.25 16 22 F -0.20 -2.63 17.16 2.25 0.04 -2.59 16 23 F -0.20 -2.53 17.17 2.25 0.04 -2.50 16 24 C -0.13 -1.72 5.89 -24.73 -0.15 -1.86 16 25 N -0.46 -7.90 7.37 31.32 0.23 -7.66 16 26 H 0.45 6.69 8.96 -182.55 -1.64 5.05 16 27 H 0.27 6.69 7.22 -40.82 -0.29 6.40 16 28 H 0.06 1.15 8.01 -51.93 -0.42 0.73 16 29 H 0.04 0.86 8.01 -51.93 -0.42 0.44 16 30 H 0.19 2.36 8.06 -52.49 -0.42 1.93 16 31 H 0.19 3.35 5.77 -52.48 -0.30 3.05 16 32 H 0.10 1.25 6.84 -51.93 -0.36 0.90 16 33 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 35 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.10 1.31 8.05 -51.93 -0.42 0.89 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -28.27 323.13 -8.19 -36.46 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.58 Total: 7.65 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -3.18 Total: -0.68 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.64 Total: -49.02 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.08 Total: -5.08 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.08 Total: 17.00 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.27 -8.19 -36.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331085607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.739 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds