Wall clock time and date at job start Fri Apr 10 2020 20:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47395 * 180.02562 * 9 7 2 11 11 C 1.36342 * 125.86134 * 85.02124 * 10 9 7 12 12 C 1.35121 * 108.89503 * 179.97438 * 11 10 9 13 13 C 1.40978 * 108.24380 * 0.02562 * 12 11 10 14 14 N 1.33313 * 126.35897 * 180.02562 * 13 12 11 15 15 C 1.32906 * 119.99892 * 359.97044 * 14 13 12 16 16 O 1.21588 * 120.00121 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99799 * 179.97438 * 15 14 13 18 18 H 1.09003 * 110.43620 * 302.54181 * 17 15 14 19 19 C 1.54265 * 110.48364 * 180.02562 * 17 15 14 20 20 C 1.53875 * 106.60146 * 217.71231 * 19 17 15 21 21 C 1.54267 * 106.59328 * 0.02562 * 20 19 17 22 22 F 1.39907 * 110.48598 * 142.28767 * 21 20 19 23 23 F 1.39903 * 110.48829 * 264.79534 * 21 20 19 24 24 C 1.54886 * 104.20135 * 23.60989 * 21 20 19 25 25 N 1.37283 * 107.28466 * 359.75396 * 13 12 11 26 26 H 0.97003 * 126.34877 * 180.25530 * 25 13 12 27 27 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 29 29 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 30 30 H 1.07998 * 125.55198 * 359.97438 * 11 10 9 31 31 H 1.08005 * 125.88097 * 180.02562 * 12 11 10 32 32 H 1.08994 * 110.03462 * 336.99899 * 19 17 15 33 33 H 1.09008 * 110.03286 * 98.38213 * 19 17 15 34 34 H 1.09000 * 110.03263 * 119.28244 * 20 19 17 35 35 H 1.09004 * 110.03736 * 240.67221 * 20 19 17 36 36 H 1.08997 * 110.76046 * 203.74598 * 24 21 20 37 37 H 1.08999 * 110.75457 * 80.36572 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7950 -4.1574 1.1003 12 6 3.6084 -5.1624 0.7075 13 6 3.5360 -5.2656 -0.6966 14 7 4.1937 -6.1386 -1.4599 15 6 5.0134 -7.0236 -0.9019 16 8 5.1631 -7.0373 0.3046 17 6 5.7564 -8.0108 -1.7647 18 1 5.0568 -8.6023 -2.3552 19 6 6.6399 -8.9294 -0.8956 20 6 7.9398 -9.1643 -1.6848 21 6 7.8010 -8.3797 -3.0058 22 9 9.0262 -7.8093 -3.3675 23 9 7.3316 -9.2154 -4.0248 24 6 6.7630 -7.2759 -2.6848 25 7 2.6578 -4.3042 -1.1316 26 1 2.4009 -4.1341 -2.0513 27 1 -0.4850 -0.8401 0.0004 28 1 0.6247 -2.5570 0.8897 29 1 0.6242 -2.5567 -0.8903 30 1 2.6391 -3.8378 2.1200 31 1 4.2104 -5.7802 1.3574 32 1 6.8626 -8.4436 0.0544 33 1 6.1325 -9.8780 -0.7196 34 1 8.7932 -8.7924 -1.1179 35 1 8.0640 -10.2273 -1.8920 36 1 6.2727 -6.9301 -3.5948 37 1 7.2328 -6.4452 -2.1582 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331085607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:22 Heat of formation + Delta-G solvation = -66.148547 kcal Electronic energy + Delta-G solvation = -23539.055524 eV Core-core repulsion = 19567.491186 eV Total energy + Delta-G solvation = -3971.564339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.89767 -48.03269 -42.45876 -40.45555 -37.60929 -36.24907 -34.73278 -32.65330 -32.34449 -30.42133 -29.13721 -27.99403 -25.29404 -24.01556 -22.87946 -22.38679 -21.82496 -20.36981 -19.46839 -18.66115 -18.21576 -17.79193 -17.32634 -16.90707 -16.69875 -16.23241 -16.14795 -15.76297 -15.60896 -15.16673 -15.02197 -14.67548 -14.50573 -14.37495 -14.32792 -14.08123 -13.87097 -13.36477 -13.15883 -13.06463 -12.62069 -12.50514 -12.28507 -12.00948 -11.91159 -11.71691 -11.59541 -10.96190 -10.82042 -10.74167 -10.59966 -9.93825 -8.92414 -8.49402 -6.66515 0.06653 0.44830 1.43121 1.54490 1.57424 1.75961 2.43130 2.57640 2.68316 2.77083 2.91250 2.96597 3.19429 3.37367 3.66447 3.78688 4.06598 4.16012 4.21084 4.25748 4.29790 4.35527 4.42582 4.51506 4.69633 4.72610 4.83269 4.94951 5.00855 5.14334 5.16889 5.30835 5.42146 5.80126 5.92868 6.04300 6.30364 6.44295 6.77021 7.09401 7.79785 8.54323 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.002839 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.904252 B = 9860.277509 C =10369.279315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 1.117 2.883 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.640 4.640 8 H 0.052 0.948 9 C 0.253 3.747 10 N -0.344 5.344 11 C 0.177 3.823 12 C -0.340 4.340 13 C 0.455 3.545 14 N -0.709 5.709 15 C 0.492 3.508 16 O -0.604 6.604 17 C -0.082 4.082 18 H 0.110 0.890 19 C -0.108 4.108 20 C -0.149 4.149 21 C 0.275 3.725 22 F -0.206 7.206 23 F -0.200 7.200 24 C -0.132 4.132 25 N -0.461 5.461 26 H 0.453 0.547 27 H 0.266 0.734 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.225 0.775 31 H 0.180 0.820 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.171 -13.118 -1.345 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.940 3.060 4 H -0.205 1.205 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.678 4.678 8 H 0.071 0.929 9 C 0.135 3.865 10 N -0.128 5.128 11 C 0.032 3.968 12 C -0.372 4.372 13 C 0.205 3.795 14 N -0.473 5.473 15 C 0.278 3.722 16 O -0.488 6.488 17 C -0.103 4.103 18 H 0.128 0.872 19 C -0.146 4.146 20 C -0.187 4.187 21 C 0.239 3.761 22 F -0.187 7.187 23 F -0.181 7.181 24 C -0.171 4.171 25 N -0.184 5.184 26 H 0.301 0.699 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.241 0.759 31 H 0.197 0.803 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.749 -11.292 -1.734 14.390 hybrid contribution -0.052 -1.403 -0.199 1.418 sum 8.697 -12.695 -1.933 15.510 Atomic orbital electron populations 1.70906 1.07581 1.30732 1.46308 1.27007 0.96252 1.05733 0.91912 0.82862 0.73911 0.71454 0.77821 1.20464 1.19971 1.20610 1.22513 0.95059 0.92090 1.58139 0.92946 1.19857 0.86211 0.80605 0.99813 1.47624 1.39567 1.28283 0.97341 1.23456 0.89602 0.90689 0.93033 1.22457 1.12203 1.07639 0.94893 1.19505 0.84204 0.85099 0.90643 1.68838 1.24830 1.16113 1.37527 1.21029 0.80730 0.83523 0.86908 1.90505 1.66550 1.73437 1.18287 1.21636 0.96828 0.95407 0.96457 0.87230 1.22046 0.93649 1.00033 0.98843 1.23118 1.00691 1.02582 0.92311 1.22114 0.79678 0.88491 0.85823 1.92981 1.46558 1.85793 1.93394 1.92990 1.88588 1.73086 1.63449 1.23183 0.95292 0.96866 1.01716 1.44578 1.41062 1.28851 1.03901 0.69882 0.92364 0.91370 0.94183 0.75890 0.80297 0.90176 0.89143 0.87495 0.87116 0.88438 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.85 13.65 21.45 0.29 -46.56 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 1.12 43.65 29.90 68.60 2.05 45.70 16 4 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.64 -29.44 9.39 25.60 0.24 -29.20 16 8 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 9 C 0.25 9.82 5.50 85.63 0.47 10.29 16 10 N -0.34 -11.81 3.63 -350.80 -1.27 -13.09 16 11 C 0.18 5.40 11.46 83.27 0.95 6.35 16 12 C -0.34 -11.68 9.51 22.22 0.21 -11.47 16 13 C 0.45 16.49 8.07 133.82 1.08 17.57 16 14 N -0.71 -25.90 10.49 -309.88 -3.25 -29.16 16 15 C 0.49 17.17 7.01 87.95 0.62 17.79 16 16 O -0.60 -23.32 12.33 -3.99 -0.05 -23.37 16 17 C -0.08 -2.17 3.33 -10.46 -0.03 -2.21 16 18 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 19 C -0.11 -2.34 6.18 31.32 0.19 -2.15 16 20 C -0.15 -2.67 6.41 31.32 0.20 -2.47 16 21 C 0.28 6.19 2.49 31.67 0.08 6.27 16 22 F -0.21 -5.11 17.16 44.97 0.77 -4.33 16 23 F -0.20 -4.81 17.17 44.97 0.77 -4.04 16 24 C -0.13 -3.29 5.89 31.89 0.19 -3.10 16 25 N -0.46 -15.46 7.37 -54.81 -0.40 -15.86 16 26 H 0.45 13.44 8.96 -213.28 -1.91 11.53 16 27 H 0.27 13.15 7.22 -92.71 -0.67 12.48 16 28 H 0.07 2.57 8.01 -2.38 -0.02 2.55 16 29 H 0.04 1.59 8.01 -2.39 -0.02 1.57 16 30 H 0.22 4.99 8.06 -2.91 -0.02 4.96 16 31 H 0.18 6.44 5.77 -2.91 -0.02 6.43 16 32 H 0.08 2.02 6.84 -2.39 -0.02 2.01 16 33 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.11 1.70 8.11 -2.39 -0.02 1.68 16 35 H 0.11 1.55 8.12 -2.39 -0.02 1.53 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.09 2.38 8.05 -2.39 -0.02 2.36 16 Total: -1.00 -58.99 323.13 2.88 -56.11 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.69 Total: 26.79 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 4.66 Total: 7.80 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -4.64 Total: -104.67 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 1.54 Total: -8.38 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.05 Total: 45.70 kcal Total: -58.99 2.88 -56.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331085607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.035 kcal (2) G-P(sol) polarization free energy of solvation -58.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds