Wall clock time and date at job start Fri Apr 10 2020 20:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46783 * 2 1 4 4 C 1.52999 * 109.47033 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47318 * 174.86982 * 4 3 2 6 6 C 1.46895 * 110.99954 * 199.75611 * 5 4 3 7 7 C 1.50704 * 109.46965 * 66.04869 * 6 5 4 8 8 H 1.07991 * 120.00011 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99608 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00576 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99746 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47021 * 59.99492 * 11 9 7 13 13 H 1.48489 * 109.47195 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46896 * 300.00059 * 11 9 7 15 15 C 1.46898 * 110.99889 * 75.80605 * 5 4 3 16 16 C 1.50695 * 109.47060 * 199.67787 * 15 5 4 17 17 C 1.33241 * 125.12616 * 84.60733 * 16 15 5 18 18 C 1.38549 * 114.99118 * 179.97438 * 17 16 15 19 19 C 1.34174 * 114.71497 * 0.02562 * 18 17 16 20 20 S 1.76200 * 125.24502 * 179.97438 * 19 18 17 21 21 C 1.81399 * 102.99758 * 180.02562 * 20 19 18 22 22 S 1.75861 * 125.12136 * 264.86692 * 16 15 5 23 23 H 1.08998 * 109.46521 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46943 * 299.99992 * 1 2 3 25 25 H 1.08993 * 109.46980 * 60.00291 * 1 2 3 26 26 H 1.08996 * 109.47410 * 240.00617 * 2 1 3 27 27 H 1.08993 * 109.46980 * 119.99709 * 2 1 3 28 28 H 1.08994 * 109.47375 * 60.00272 * 3 2 1 29 29 H 1.08998 * 109.47247 * 300.00087 * 3 2 1 30 30 H 1.09004 * 109.47074 * 54.87112 * 4 3 2 31 31 H 1.09004 * 109.47320 * 294.87277 * 4 3 2 32 32 H 1.09003 * 109.47369 * 186.04887 * 6 5 4 33 33 H 1.09003 * 109.47777 * 306.04535 * 6 5 4 34 34 H 0.96995 * 120.00264 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47475 * 79.66962 * 15 5 4 36 36 H 1.09002 * 109.46919 * 319.67227 * 15 5 4 37 37 H 1.08002 * 122.50507 * 0.02562 * 17 16 15 38 38 H 1.08010 * 122.64138 * 180.02562 * 18 17 16 39 39 H 1.08993 * 109.47198 * 299.99666 * 21 20 19 40 40 H 1.09005 * 109.46947 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47640 * 60.00080 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0597 2.8221 -0.1232 6 6 5.4522 2.8464 -0.5902 7 6 5.5190 2.3145 -1.9987 8 1 4.6173 1.9904 -2.4968 9 6 6.7315 2.2416 -2.6512 10 7 7.8295 2.6367 -2.0448 11 14 6.8144 1.5816 -4.3968 12 1 5.9785 2.4275 -5.2861 13 1 8.2218 1.6074 -4.8694 14 1 6.3085 0.1856 -4.4227 15 6 3.9176 3.5471 1.1465 16 6 3.9591 5.0306 0.8851 17 6 2.9141 5.7755 0.5267 18 6 3.1901 7.1205 0.3411 19 6 4.4698 7.4647 0.5511 20 16 5.1236 9.0934 0.3938 21 6 6.8760 8.8712 0.8068 22 16 5.3956 6.0385 1.0009 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 1.9564 -0.8900 30 1 3.9337 0.8511 -0.8396 31 1 3.9330 1.0105 0.9332 32 1 5.8242 3.8708 -0.5707 33 1 6.0653 2.2248 0.0624 34 1 8.6823 2.5858 -2.5041 35 1 4.7337 3.2729 1.8149 36 1 2.9657 3.2863 1.6092 37 1 1.9256 5.3619 0.3918 38 1 2.4346 7.8355 0.0504 39 1 6.9636 8.4808 1.8206 40 1 7.3890 9.8308 0.7417 41 1 7.3281 8.1689 0.1066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142025708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:10 Heat of formation + Delta-G solvation = 18.102378 kcal Electronic energy + Delta-G solvation = -19772.790098 eV Core-core repulsion = 16905.012755 eV Total energy + Delta-G solvation = -2867.777344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 299.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.96157 -36.67759 -34.31883 -32.56707 -30.44148 -29.06853 -28.58277 -26.87913 -24.92588 -22.95646 -22.68954 -20.78559 -20.15613 -19.22663 -17.26444 -16.43748 -15.80695 -15.23187 -14.84605 -14.71556 -14.50320 -13.93857 -13.80159 -13.67854 -13.43703 -13.13078 -12.64881 -12.49646 -12.22904 -12.14834 -11.92912 -11.86369 -11.65675 -11.35688 -10.92019 -10.82346 -10.74337 -10.69335 -10.51911 -10.29767 -10.12015 -10.02923 -9.76671 -9.29624 -9.13217 -8.45216 -8.05003 -7.31604 -7.13589 -6.02671 -4.03322 1.23908 1.49863 1.66968 2.33976 2.65975 3.06946 3.33056 3.37158 3.40393 4.42583 4.85282 5.02945 5.07583 5.21755 5.23968 5.32869 5.39818 5.40401 5.62062 5.65810 5.69872 5.76042 5.84826 5.94398 6.01037 6.05488 6.12278 6.17455 6.34586 6.37026 6.46020 6.59106 6.72233 6.81494 6.84532 7.28271 7.30475 7.78913 8.07682 8.17585 8.51695 9.03243 9.60175 11.08146 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.009964 B = 0.005366 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.443704 B = 5216.847316 C = 7399.665054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.189 3.811 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.119 3.881 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.107 4.107 19 C -0.218 4.218 20 S -0.072 6.072 21 C -0.152 4.152 22 S 0.127 5.873 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.018 0.982 32 H 0.038 0.962 33 H -0.012 1.012 34 H 0.261 0.739 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.177 6.130 8.199 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.067 4.067 5 N -0.254 5.254 6 C 0.063 3.937 7 C -0.544 4.544 8 H 0.081 0.919 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.011 4.011 16 C -0.256 4.256 17 C -0.155 4.155 18 C -0.145 4.145 19 C -0.446 4.446 20 S 0.165 5.835 21 C -0.321 4.321 22 S 0.389 5.611 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.006 0.994 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.177 7.187 7.894 12.864 hybrid contribution -0.079 -1.677 -0.489 1.748 sum -7.255 5.510 7.405 11.740 Atomic orbital electron populations 1.21755 0.96379 1.00951 1.01575 1.21500 0.95252 0.97649 1.01830 1.21624 0.96137 0.95500 1.01836 1.22045 0.93721 0.90369 1.00537 1.62120 1.25805 1.13233 1.24256 1.19850 0.81123 0.97447 0.95235 1.21084 0.93259 1.41588 0.98474 0.91899 1.24960 0.95644 0.95719 0.98124 1.69941 0.98441 1.47813 1.37513 0.86601 0.76875 0.79441 0.84761 1.20167 1.21365 1.20269 1.20548 1.00720 0.87104 0.92711 1.24397 0.94883 0.99454 1.06833 1.19860 1.00086 0.92191 1.03364 1.19799 0.94404 0.96390 1.03867 1.25963 1.01474 1.00919 1.16285 1.84906 1.06785 1.04059 1.87783 1.23711 0.95591 1.07134 1.05701 1.84431 1.11967 0.96304 1.68387 0.93294 0.93116 0.92802 0.91906 0.92561 0.93099 0.91283 0.89332 0.96340 0.94438 0.99416 0.92920 0.94750 0.90026 0.84235 0.84618 0.89729 0.87230 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.12 -1.61 5.93 -26.73 -0.16 -1.76 16 3 C -0.11 -1.70 5.26 -26.73 -0.14 -1.84 16 4 C 0.06 1.15 4.79 -3.82 -0.02 1.13 16 5 N -0.53 -11.14 4.35 -237.51 -1.03 -12.17 16 6 C 0.19 4.85 4.55 -4.98 -0.02 4.83 16 7 C -0.51 -14.10 8.23 -34.44 -0.28 -14.39 16 8 H 0.06 1.74 7.31 -52.49 -0.38 1.36 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 11 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.12 2.14 5.30 -4.98 -0.03 2.11 16 16 C -0.13 -2.40 5.46 -36.05 -0.20 -2.59 16 17 C -0.12 -2.00 10.04 -41.21 -0.41 -2.41 16 18 C -0.11 -1.67 10.13 -40.90 -0.41 -2.08 16 19 C -0.22 -3.52 6.69 29.30 0.20 -3.32 16 20 S -0.07 -0.98 22.72 -107.50 -2.44 -3.42 16 21 C -0.15 -1.72 9.84 101.05 0.99 -0.72 16 22 S 0.13 2.23 21.22 -107.50 -2.28 -0.05 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.71 6.89 -51.93 -0.36 0.35 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.86 6.58 -51.93 -0.34 1.51 16 31 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 16 32 H 0.04 1.03 6.44 -51.93 -0.33 0.69 16 33 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.03 0.63 8.00 -51.93 -0.42 0.22 16 36 H 0.08 1.26 6.56 -51.93 -0.34 0.92 16 37 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.14 1.83 8.06 -52.48 -0.42 1.40 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.11 0.95 8.14 -51.92 -0.42 0.52 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -29.85 359.63 -11.63 -41.49 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.80 Total: -1.35 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -0.21 Total: -20.81 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.30 Total: -37.98 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -4.72 Total: -3.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.85 -11.63 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142025708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.588 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds