Wall clock time and date at job start Fri Apr 10 2020 20:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46783 * 2 1 4 4 C 1.52999 * 109.47033 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47318 * 174.86982 * 4 3 2 6 6 C 1.46895 * 110.99954 * 199.75611 * 5 4 3 7 7 C 1.50704 * 109.46965 * 66.04869 * 6 5 4 8 8 H 1.07991 * 120.00011 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99608 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00576 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99746 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47021 * 59.99492 * 11 9 7 13 13 H 1.48489 * 109.47195 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46896 * 300.00059 * 11 9 7 15 15 C 1.46898 * 110.99889 * 75.80605 * 5 4 3 16 16 C 1.50695 * 109.47060 * 199.67787 * 15 5 4 17 17 C 1.33241 * 125.12616 * 84.60733 * 16 15 5 18 18 C 1.38549 * 114.99118 * 179.97438 * 17 16 15 19 19 C 1.34174 * 114.71497 * 0.02562 * 18 17 16 20 20 S 1.76200 * 125.24502 * 179.97438 * 19 18 17 21 21 C 1.81399 * 102.99758 * 180.02562 * 20 19 18 22 22 S 1.75861 * 125.12136 * 264.86692 * 16 15 5 23 23 H 1.08998 * 109.46521 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46943 * 299.99992 * 1 2 3 25 25 H 1.08993 * 109.46980 * 60.00291 * 1 2 3 26 26 H 1.08996 * 109.47410 * 240.00617 * 2 1 3 27 27 H 1.08993 * 109.46980 * 119.99709 * 2 1 3 28 28 H 1.08994 * 109.47375 * 60.00272 * 3 2 1 29 29 H 1.08998 * 109.47247 * 300.00087 * 3 2 1 30 30 H 1.09004 * 109.47074 * 54.87112 * 4 3 2 31 31 H 1.09004 * 109.47320 * 294.87277 * 4 3 2 32 32 H 1.09003 * 109.47369 * 186.04887 * 6 5 4 33 33 H 1.09003 * 109.47777 * 306.04535 * 6 5 4 34 34 H 0.96995 * 120.00264 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47475 * 79.66962 * 15 5 4 36 36 H 1.09002 * 109.46919 * 319.67227 * 15 5 4 37 37 H 1.08002 * 122.50507 * 0.02562 * 17 16 15 38 38 H 1.08010 * 122.64138 * 180.02562 * 18 17 16 39 39 H 1.08993 * 109.47198 * 299.99666 * 21 20 19 40 40 H 1.09005 * 109.46947 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47640 * 60.00080 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0597 2.8221 -0.1232 6 6 5.4522 2.8464 -0.5902 7 6 5.5190 2.3145 -1.9987 8 1 4.6173 1.9904 -2.4968 9 6 6.7315 2.2416 -2.6512 10 7 7.8295 2.6367 -2.0448 11 14 6.8144 1.5816 -4.3968 12 1 5.9785 2.4275 -5.2861 13 1 8.2218 1.6074 -4.8694 14 1 6.3085 0.1856 -4.4227 15 6 3.9176 3.5471 1.1465 16 6 3.9591 5.0306 0.8851 17 6 2.9141 5.7755 0.5267 18 6 3.1901 7.1205 0.3411 19 6 4.4698 7.4647 0.5511 20 16 5.1236 9.0934 0.3938 21 6 6.8760 8.8712 0.8068 22 16 5.3956 6.0385 1.0009 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 1.9564 -0.8900 30 1 3.9337 0.8511 -0.8396 31 1 3.9330 1.0105 0.9332 32 1 5.8242 3.8708 -0.5707 33 1 6.0653 2.2248 0.0624 34 1 8.6823 2.5858 -2.5041 35 1 4.7337 3.2729 1.8149 36 1 2.9657 3.2863 1.6092 37 1 1.9256 5.3619 0.3918 38 1 2.4346 7.8355 0.0504 39 1 6.9636 8.4808 1.8206 40 1 7.3890 9.8308 0.7417 41 1 7.3281 8.1689 0.1066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142025708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:10 Heat of formation + Delta-G solvation = 2.564596 kcal Electronic energy + Delta-G solvation = -19773.463867 eV Core-core repulsion = 16905.012755 eV Total energy + Delta-G solvation = -2868.451112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 299.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.41183 -38.07121 -35.61774 -34.59024 -31.81500 -30.13418 -30.01283 -28.49752 -26.41951 -24.63665 -24.03208 -22.10096 -21.60552 -20.52105 -18.72152 -18.40200 -17.11426 -16.68973 -16.40632 -16.18193 -15.86938 -15.50294 -15.07502 -14.82723 -14.50632 -14.33056 -14.05114 -13.87031 -13.68045 -13.59777 -13.37739 -13.08291 -12.99970 -12.90851 -12.64801 -12.58544 -12.12654 -12.04615 -11.83762 -11.80939 -11.47350 -11.36514 -11.24597 -11.20643 -10.60390 -10.46651 -9.42001 -9.04060 -8.30753 -8.19306 -6.28547 -0.06127 0.39822 0.40557 1.05646 1.38355 1.41365 1.48842 1.53903 1.80286 2.39225 3.12656 3.33846 3.90552 4.08255 4.13194 4.17903 4.19735 4.29286 4.34141 4.47497 4.53567 4.54558 4.67831 4.75938 4.82960 4.85790 5.01586 5.04860 5.10198 5.15207 5.22126 5.30075 5.32083 5.38915 5.51415 5.57654 5.58440 5.65679 6.06763 6.35130 6.60752 6.86610 7.39848 8.90781 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.009964 B = 0.005366 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.443704 B = 5216.847316 C = 7399.665054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.100 4.100 4 C 0.062 3.938 5 N -0.534 5.534 6 C 0.205 3.795 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.004 3.996 10 N -0.932 5.932 11 Si 0.962 3.038 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.123 3.877 16 C -0.161 4.161 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.218 4.218 20 S -0.063 6.063 21 C -0.150 4.150 22 S 0.081 5.919 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.018 0.982 33 H -0.046 1.046 34 H 0.263 0.737 35 H 0.023 0.977 36 H 0.113 0.887 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.089 0.911 40 H 0.140 0.860 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 6.580 7.912 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.138 4.138 4 C -0.066 4.066 5 N -0.258 5.258 6 C 0.078 3.922 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.194 4.194 10 N -0.572 5.572 11 Si 0.787 3.213 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.006 4.006 16 C -0.282 4.282 17 C -0.144 4.144 18 C -0.152 4.152 19 C -0.447 4.447 20 S 0.173 5.827 21 C -0.319 4.319 22 S 0.342 5.658 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.036 0.964 33 H -0.029 1.029 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.130 0.870 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.108 0.892 40 H 0.158 0.842 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.098 7.634 7.618 14.109 hybrid contribution 0.525 -1.736 -0.348 1.847 sum -8.573 5.898 7.270 12.694 Atomic orbital electron populations 1.21715 0.94425 1.02025 1.02047 1.21482 0.96889 0.95934 1.01735 1.21512 0.92867 0.97228 1.02160 1.22082 0.96358 0.88783 0.99404 1.62081 1.22488 1.14803 1.26419 1.19473 0.83423 0.95249 0.94010 1.21394 0.93324 1.41543 0.99522 0.92121 1.25833 0.95247 0.95913 1.02387 1.70072 0.98978 1.48904 1.39275 0.85550 0.77060 0.79199 0.79534 1.19625 1.20835 1.19111 1.20582 1.01795 0.87161 0.91073 1.24415 0.95136 0.99348 1.09274 1.20174 1.00508 0.92359 1.01332 1.20130 0.94793 0.96695 1.03612 1.26291 1.01551 1.01404 1.15437 1.84823 1.08301 1.02044 1.87489 1.23818 0.94062 1.08515 1.05520 1.84541 1.13527 0.98200 1.69502 0.91984 0.92069 0.92903 0.92927 0.91863 0.91265 0.92293 0.92255 0.95966 0.96383 1.02872 0.92817 0.95848 0.86955 0.82033 0.82106 0.89215 0.84156 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.12 -2.95 5.93 30.60 0.18 -2.77 16 3 C -0.10 -2.86 5.26 30.59 0.16 -2.70 16 4 C 0.06 2.32 4.79 86.30 0.41 2.73 16 5 N -0.53 -22.80 4.35 -905.35 -3.93 -26.73 16 6 C 0.20 10.99 4.55 85.56 0.39 11.37 16 7 C -0.52 -29.75 8.23 25.60 0.21 -29.54 16 8 H 0.06 3.42 7.31 -2.92 -0.02 3.40 16 9 C 0.00 0.25 5.46 84.66 0.46 0.71 16 10 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 11 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 C 0.12 4.42 5.30 85.56 0.45 4.88 16 16 C -0.16 -5.71 5.46 24.56 0.13 -5.58 16 17 C -0.11 -3.46 10.04 21.22 0.21 -3.25 16 18 C -0.11 -3.40 10.13 21.42 0.22 -3.18 16 19 C -0.22 -6.90 6.69 66.89 0.45 -6.45 16 20 S -0.06 -1.64 22.72 -56.49 -1.28 -2.93 16 21 C -0.15 -3.24 9.84 113.37 1.12 -2.12 16 22 S 0.08 2.91 21.22 -56.49 -1.20 1.71 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.74 6.89 -2.39 -0.02 1.72 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 2.56 6.58 -2.38 -0.02 2.54 16 31 H 0.02 0.81 8.00 -2.38 -0.02 0.79 16 32 H 0.02 1.04 6.44 -2.39 -0.02 1.02 16 33 H -0.05 -2.74 8.12 -2.39 -0.02 -2.76 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 36 H 0.11 3.27 6.56 -2.39 -0.02 3.25 16 37 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 38 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -65.66 359.63 1.99 -63.66 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.99 Total: 11.60 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 5.11 Total: -37.97 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -3.65 Total: -83.04 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.48 Total: -1.21 kcal Total: -65.66 1.99 -63.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142025708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.229 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds