Wall clock time and date at job start Fri Apr 10 2020 20:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.53000 * 109.47004 * 240.00497 * 2 1 3 5 5 C 1.52993 * 109.47544 * 174.99714 * 4 2 1 6 6 C 1.50704 * 109.47543 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99610 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00143 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00209 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00229 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47418 * 89.99640 * 10 8 6 12 12 H 1.48503 * 109.47498 * 209.99956 * 10 8 6 13 13 H 1.48508 * 109.46988 * 330.00110 * 10 8 6 14 14 N 1.46891 * 109.47484 * 120.00444 * 2 1 3 15 15 C 1.46897 * 111.00054 * 275.00053 * 14 2 1 16 16 C 1.53003 * 109.47251 * 179.97438 * 15 14 2 17 17 C 1.50699 * 109.47098 * 179.97438 * 16 15 14 18 18 C 1.38253 * 119.97741 * 100.00428 * 17 16 15 19 19 C 1.38178 * 120.03517 * 180.27921 * 18 17 16 20 20 C 1.38490 * 120.00538 * 359.44163 * 19 18 17 21 21 F 1.35101 * 120.02356 * 180.30390 * 20 19 18 22 22 C 1.38414 * 119.95621 * 0.53360 * 20 19 18 23 23 C 1.38334 * 119.96702 * 359.74320 * 22 20 19 24 24 Cl 1.73598 * 120.00346 * 179.97438 * 23 22 20 25 25 H 1.09000 * 109.47117 * 299.99882 * 1 2 3 26 26 H 1.09001 * 109.47715 * 59.99321 * 1 2 3 27 27 H 1.08995 * 109.47417 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46917 * 295.00390 * 4 2 1 29 29 H 1.09004 * 109.47340 * 54.99617 * 4 2 1 30 30 H 1.08994 * 109.47263 * 300.00205 * 5 4 2 31 31 H 1.09001 * 109.47173 * 60.00036 * 5 4 2 32 32 H 0.96991 * 120.00031 * 180.02562 * 9 8 6 33 33 H 1.00903 * 111.00231 * 38.95096 * 14 2 1 34 34 H 1.08990 * 109.47437 * 59.99721 * 15 14 2 35 35 H 1.09004 * 109.46938 * 299.99347 * 15 14 2 36 36 H 1.09007 * 109.46994 * 59.99750 * 16 15 14 37 37 H 1.08998 * 109.47402 * 299.99824 * 16 15 14 38 38 H 1.08002 * 119.97828 * 359.97438 * 18 17 16 39 39 H 1.08002 * 119.99589 * 179.72228 * 19 18 17 40 40 H 1.08001 * 120.01938 * 179.77106 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3139 6 6 4.0670 -1.3241 -2.5441 7 1 3.3685 -1.8044 -3.2132 8 6 5.4183 -1.3612 -2.8154 9 7 5.8567 -1.9811 -3.8893 10 14 6.6265 -0.5309 -1.6577 11 1 7.0611 -1.4986 -0.6185 12 1 7.8090 -0.0659 -2.4264 13 1 5.9701 0.6318 -1.0077 14 7 2.0197 -0.6925 1.1993 15 6 2.0825 0.2224 2.3468 16 6 2.5952 -0.5334 3.5743 17 6 2.6602 0.4054 4.7514 18 6 1.6529 0.3969 5.6983 19 6 1.7084 1.2612 6.7749 20 6 2.7792 2.1287 6.9122 21 9 2.8369 2.9696 7.9680 22 6 3.7879 2.1368 5.9644 23 6 3.7280 1.2749 4.8841 24 17 4.9923 1.2849 3.6945 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7515 -1.7714 -1.2057 29 1 1.6052 -0.2616 -2.1370 30 1 3.8530 0.4370 -1.3575 31 1 3.9994 -1.0728 -0.4263 32 1 6.8073 -2.0075 -4.0799 33 1 1.4496 -1.4980 1.4099 34 1 1.0872 0.6161 2.5525 35 1 2.7589 1.0460 2.1182 36 1 3.5905 -0.9275 3.3689 37 1 1.9185 -1.3568 3.8029 38 1 0.8197 -0.2823 5.5937 39 1 0.9189 1.2571 7.5119 40 1 4.6216 2.8155 6.0685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:52 Heat of formation + Delta-G solvation = -49.451808 kcal Electronic energy + Delta-G solvation = -21348.254131 eV Core-core repulsion = 17909.290535 eV Total energy + Delta-G solvation = -3438.963595 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.29668 -39.78430 -37.44032 -36.66349 -34.24514 -32.77831 -31.38217 -31.01243 -29.44545 -27.12701 -25.24474 -23.53862 -23.12735 -21.38944 -21.03024 -19.77838 -18.17971 -17.10629 -16.55803 -16.17333 -15.99383 -15.44094 -15.07357 -14.73856 -14.40108 -14.17370 -14.13565 -13.80934 -13.46001 -12.92224 -12.69880 -12.62189 -12.44018 -12.11706 -12.05903 -11.76000 -11.60341 -11.42070 -11.33421 -11.03789 -10.99307 -10.78899 -10.40646 -9.82721 -9.60087 -9.45897 -9.36870 -8.99897 -8.87511 -8.40786 -8.02509 -5.92526 -3.88206 0.59725 0.67501 1.82583 3.01694 3.41008 3.47073 3.53748 3.83175 4.16053 4.29090 4.47006 4.57518 4.68246 4.77190 5.06390 5.07890 5.19305 5.28070 5.43460 5.45011 5.49295 5.51231 5.55493 5.60524 5.67619 5.79339 5.98081 6.04668 6.14919 6.21140 6.29834 6.33711 6.55779 6.74293 7.13045 7.34213 7.56305 7.68834 7.76242 7.96708 8.68180 9.13986 9.72090 11.21476 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.003700 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.734649 B = 7565.827645 C = 8822.236895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.071 0.929 4 C -0.089 4.089 5 C -0.006 4.006 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.292 1.292 13 H -0.265 1.265 14 N -0.674 5.674 15 C 0.066 3.934 16 C -0.086 4.086 17 C -0.075 4.075 18 C -0.077 4.077 19 C -0.148 4.148 20 C 0.103 3.897 21 F -0.135 7.135 22 C -0.145 4.145 23 C -0.009 4.009 24 Cl -0.039 7.039 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.006 0.994 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.336 0.664 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.002 7.234 23.434 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.044 4.044 6 C -0.553 4.553 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.190 1.190 14 N -0.304 5.304 15 C -0.064 4.064 16 C -0.123 4.123 17 C -0.077 4.077 18 C -0.095 4.095 19 C -0.167 4.167 20 C 0.084 3.916 21 F -0.114 7.114 22 C -0.165 4.165 23 C -0.036 4.036 24 Cl -0.009 7.009 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.050 7.314 23.093 25.859 hybrid contribution -0.068 0.718 0.882 1.140 sum -9.118 8.032 23.975 26.879 Atomic orbital electron populations 1.22511 0.98301 1.01691 1.01359 1.21760 0.91275 0.98301 0.91449 0.91062 1.21447 0.98968 0.99012 0.93319 1.19465 0.91501 0.96134 0.97257 1.21269 0.92777 1.33763 1.07539 0.91415 1.25016 0.98443 0.95078 0.95079 1.69929 1.14383 1.44125 1.26574 0.86770 0.80602 0.80695 0.81169 1.20333 1.21817 1.19000 1.60506 1.57795 1.09106 1.02974 1.21907 0.98890 0.95931 0.89656 1.20687 1.04457 0.96247 0.90925 1.19902 0.93157 0.97045 0.97581 1.20918 0.98017 0.98094 0.92497 1.21231 0.98327 0.96855 1.00322 1.17453 0.96250 0.91976 0.85959 1.91523 1.96399 1.69174 1.54304 1.20994 1.00239 1.01340 0.93916 1.20640 0.92324 0.98141 0.92518 1.98448 1.49840 1.97540 1.55096 0.93733 0.92130 0.92613 0.92861 0.92918 0.97569 0.95455 0.92994 0.84564 0.95702 0.90671 0.88800 0.90440 0.84013 0.84166 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 9.16 37.15 0.34 -1.89 16 2 C 0.08 1.26 2.59 -67.72 -0.18 1.09 16 3 H 0.07 1.16 7.80 -51.93 -0.40 0.75 16 4 C -0.09 -1.76 4.83 -26.73 -0.13 -1.89 16 5 C -0.01 -0.15 3.93 -27.88 -0.11 -0.26 16 6 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 7 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -28.94 13.96 55.43 0.77 -28.16 16 10 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 14 N -0.67 -9.64 5.70 -106.74 -0.61 -10.25 16 15 C 0.07 0.80 5.41 -3.82 -0.02 0.78 16 16 C -0.09 -0.89 5.06 -27.88 -0.14 -1.03 16 17 C -0.08 -0.73 5.14 -104.58 -0.54 -1.27 16 18 C -0.08 -0.60 9.67 -39.60 -0.38 -0.98 16 19 C -0.15 -1.15 10.03 -39.51 -0.40 -1.54 16 20 C 0.10 0.95 7.30 -39.42 -0.29 0.66 16 21 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 22 C -0.15 -1.40 9.81 -39.48 -0.39 -1.79 16 23 C -0.01 -0.10 6.31 -39.51 -0.25 -0.35 16 24 Cl -0.04 -0.48 26.62 -51.86 -1.38 -1.86 16 25 H 0.04 0.49 7.45 -51.93 -0.39 0.10 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 31 H 0.03 0.68 7.18 -51.93 -0.37 0.31 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 33 H 0.34 4.22 8.47 -39.29 -0.33 3.89 16 34 H 0.02 0.27 7.44 -51.93 -0.39 -0.11 16 35 H 0.07 1.04 7.17 -51.93 -0.37 0.66 16 36 H 0.09 1.14 7.35 -51.92 -0.38 0.76 16 37 H 0.08 0.66 8.00 -51.93 -0.42 0.25 16 38 H 0.14 0.77 8.04 -52.49 -0.42 0.35 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -32.04 347.21 -9.49 -41.54 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.97 Total: -1.19 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.91 Total: -22.11 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.16 Total: -38.42 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.38 Total: -1.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.04 -9.49 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.916 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds