Wall clock time and date at job start Fri Apr 10 2020 20:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47418 * 2 1 4 4 C 1.53001 * 109.46874 * 240.00105 * 2 1 3 5 5 N 1.46503 * 109.46981 * 184.99813 * 4 2 1 6 6 C 1.46498 * 119.99982 * 269.99891 * 5 4 2 7 7 C 1.36935 * 119.99494 * 90.00690 * 5 4 2 8 8 H 1.08003 * 120.00569 * 22.33816 * 7 5 4 9 9 C 1.38815 * 119.99526 * 202.34301 * 7 5 4 10 10 N 1.31615 * 120.00376 * 11.35028 * 9 7 5 11 11 Si 1.86806 * 119.99836 * 191.35379 * 9 7 5 12 12 H 1.48501 * 109.47293 * 89.99918 * 11 9 7 13 13 H 1.48499 * 109.47071 * 210.00053 * 11 9 7 14 14 H 1.48503 * 109.47119 * 329.99572 * 11 9 7 15 15 N 1.46501 * 109.47077 * 120.00463 * 2 1 3 16 16 C 1.34771 * 120.00168 * 274.99514 * 15 2 1 17 17 O 1.21554 * 119.99754 * 0.02562 * 16 15 2 18 18 C 1.47873 * 120.00336 * 180.02562 * 16 15 2 19 19 N 1.32847 * 119.72237 * 359.72908 * 18 16 15 20 20 C 1.31369 * 121.68660 * 179.71206 * 19 18 16 21 21 C 1.38994 * 120.93494 * 0.56556 * 20 19 18 22 22 F 1.35103 * 120.32910 * 179.74976 * 21 20 19 23 23 C 1.38721 * 119.34188 * 359.72361 * 21 20 19 24 24 C 1.38827 * 118.45263 * 359.97438 * 23 21 20 25 25 F 1.35095 * 120.48885 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.47299 * 59.99396 * 1 2 3 27 27 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46748 * 300.00102 * 1 2 3 29 29 H 1.08997 * 109.47246 * 305.00459 * 4 2 1 30 30 H 1.09007 * 109.47074 * 65.00252 * 4 2 1 31 31 H 1.09002 * 109.46941 * 94.23223 * 6 5 4 32 32 H 1.09000 * 109.46999 * 214.22758 * 6 5 4 33 33 H 1.08992 * 109.47487 * 334.22872 * 6 5 4 34 34 H 0.96995 * 120.00508 * 180.02562 * 10 9 7 35 35 H 0.97005 * 120.00086 * 94.99998 * 15 2 1 36 36 H 1.08000 * 119.52685 * 180.26905 * 20 19 18 37 37 H 1.08005 * 120.77556 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3342 0.2341 -1.7614 7 6 4.0849 -1.9159 -0.6025 8 1 3.5337 -2.8400 -0.5089 9 6 5.3862 -1.8326 -0.1264 10 7 5.9794 -0.6614 -0.0339 11 14 6.2954 -3.3830 0.3828 12 1 7.0229 -3.9371 -0.7873 13 1 7.2648 -3.0572 1.4595 14 1 5.3213 -4.3871 0.8809 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0185 2.3571 17 8 1.8577 1.1608 2.4119 18 6 2.6406 -0.7155 3.5643 19 7 2.9502 -2.0058 3.4996 20 6 3.3971 -2.6615 4.5465 21 6 3.5529 -2.0276 5.7736 22 9 4.0087 -2.7151 6.8436 23 6 3.2363 -0.6819 5.8886 24 6 2.7722 -0.0132 4.7640 25 9 2.4512 1.2975 4.8297 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6053 -1.7197 -1.2953 30 1 1.7516 -0.1582 -2.1370 31 1 4.6023 0.9455 -0.9803 32 1 5.2403 -0.2028 -2.1813 33 1 3.7810 0.7484 -2.5471 34 1 6.8888 -0.6032 0.2984 35 1 2.2490 -1.6319 1.1525 36 1 3.6423 -3.7092 4.4535 37 1 3.3489 -0.1663 6.8309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754314955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:51 Heat of formation + Delta-G solvation = -60.382121 kcal Electronic energy + Delta-G solvation = -25000.605254 eV Core-core repulsion = 21029.290966 eV Total energy + Delta-G solvation = -3971.314288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.29896 -48.96224 -40.28512 -38.67070 -36.29047 -34.00089 -32.67083 -31.48453 -30.84735 -29.71245 -26.16707 -25.59043 -24.90060 -23.87126 -21.97436 -20.83663 -19.73875 -18.35885 -18.21497 -17.66533 -16.64324 -16.36816 -15.98812 -15.53950 -15.46269 -15.09072 -14.79872 -14.56036 -14.30098 -13.73233 -13.48362 -13.36262 -13.20537 -12.84653 -12.80808 -12.54735 -12.17975 -11.87334 -11.39463 -11.27774 -10.86041 -10.68340 -10.41657 -10.28408 -10.14670 -10.02207 -10.00905 -9.81251 -9.43076 -9.01436 -8.55119 -8.28498 -6.77030 -5.72134 -3.18134 0.32734 0.74558 2.84204 3.34565 3.37693 3.42070 3.43313 3.63078 3.85448 3.95034 4.13884 4.39703 4.48503 4.66030 4.99283 5.30331 5.35781 5.49816 5.55050 5.58019 5.67654 5.89220 5.98632 6.16957 6.25242 6.31973 6.45869 6.51142 6.75703 6.88109 7.20235 7.39958 7.45100 7.73552 7.81409 8.23895 8.38192 8.81050 9.22382 9.86031 10.35337 11.32182 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.012137 B = 0.007020 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.534740 B = 3987.414522 C = 5497.281128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 H 0.079 0.921 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.253 4.253 8 H 0.068 0.932 9 C 0.009 3.991 10 N -0.901 5.901 11 Si 0.896 3.104 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.276 1.276 15 N -0.659 5.659 16 C 0.568 3.432 17 O -0.542 6.542 18 C 0.056 3.944 19 N -0.388 5.388 20 C 0.066 3.934 21 C 0.093 3.907 22 F -0.120 7.120 23 C -0.160 4.160 24 C 0.136 3.864 25 F -0.098 7.098 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.044 0.956 33 H -0.004 1.004 34 H 0.251 0.749 35 H 0.415 0.585 36 H 0.180 0.820 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 -2.531 8.707 11.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 H 0.097 0.903 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.383 4.383 8 H 0.086 0.914 9 C -0.190 4.190 10 N -0.545 5.545 11 Si 0.726 3.274 12 H -0.217 1.217 13 H -0.220 1.220 14 H -0.201 1.201 15 N -0.308 5.308 16 C 0.351 3.649 17 O -0.420 6.420 18 C -0.084 4.084 19 N -0.098 5.098 20 C -0.096 4.096 21 C 0.071 3.929 22 F -0.099 7.099 23 C -0.187 4.187 24 C 0.113 3.887 25 F -0.076 7.076 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.061 0.939 35 H 0.253 0.747 36 H 0.197 0.803 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.888 -2.042 7.941 11.378 hybrid contribution 1.140 -0.679 1.549 2.040 sum -6.748 -2.721 9.490 11.959 Atomic orbital electron populations 1.22157 0.96587 1.01428 1.01691 1.21966 0.92018 0.98534 0.86760 0.90274 1.21204 0.86035 0.97985 0.93431 1.43920 0.98878 1.22676 1.66612 1.20797 0.92980 0.90455 0.93831 1.19088 0.97108 0.89421 1.32666 0.91429 1.24966 0.98678 0.96080 0.99231 1.70073 1.13258 1.21595 1.49622 0.86384 0.79903 0.83188 0.77930 1.21672 1.21986 1.20088 1.45577 1.62602 1.14988 1.07641 1.17384 0.78818 0.85956 0.82755 1.90794 1.51770 1.14642 1.84783 1.21767 1.01760 0.90704 0.94174 1.67804 1.06365 1.06681 1.28905 1.23096 0.98454 1.01791 0.86243 1.18750 0.98690 0.90037 0.85454 1.91558 1.85919 1.78796 1.53610 1.21592 1.02934 0.93885 1.00323 1.18339 0.97211 0.79954 0.93243 1.91642 1.89007 1.30375 1.96532 0.92031 0.92862 0.92902 0.93189 0.92763 0.95433 0.93684 0.98554 0.93898 0.74696 0.80269 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.48 37.16 0.35 -2.05 16 2 C 0.11 2.16 2.88 -67.93 -0.20 1.96 16 3 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 4 C 0.14 2.71 5.36 -4.04 -0.02 2.69 16 5 N -0.60 -14.23 2.82 -181.12 -0.51 -14.74 16 6 C 0.16 4.00 9.01 59.85 0.54 4.53 16 7 C -0.25 -6.45 8.02 -15.06 -0.12 -6.57 16 8 H 0.07 1.67 7.84 -52.48 -0.41 1.26 16 9 C 0.01 0.25 5.13 -17.43 -0.09 0.16 16 10 N -0.90 -25.69 10.59 55.49 0.59 -25.10 16 11 Si 0.90 21.15 29.57 -169.99 -5.03 16.12 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 N -0.66 -13.17 4.48 -54.74 -0.25 -13.42 16 16 C 0.57 11.80 7.77 -12.32 -0.10 11.70 16 17 O -0.54 -12.40 14.97 5.32 0.08 -12.32 16 18 C 0.06 1.02 6.75 -82.96 -0.56 0.46 16 19 N -0.39 -6.55 9.53 -9.70 -0.09 -6.64 16 20 C 0.07 0.89 11.17 -17.47 -0.20 0.70 16 21 C 0.09 1.14 7.35 -39.12 -0.29 0.85 16 22 F -0.12 -1.36 17.28 2.25 0.04 -1.32 16 23 C -0.16 -2.00 10.14 -39.19 -0.40 -2.39 16 24 C 0.14 2.18 7.31 -38.84 -0.28 1.89 16 25 F -0.10 -1.69 15.54 2.25 0.04 -1.66 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 30 H 0.05 0.94 7.86 -51.92 -0.41 0.53 16 31 H 0.03 0.74 7.42 -51.93 -0.39 0.36 16 32 H 0.04 1.18 7.19 -51.93 -0.37 0.80 16 33 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.42 8.38 6.72 -40.82 -0.27 8.11 16 36 H 0.18 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -30.62 325.82 -5.90 -36.52 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.32 Total: 3.72 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -1.36 Total: 13.94 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.26 Total: -59.91 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.07 Total: -2.98 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.62 -5.90 -36.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754314955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.867 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds