Wall clock time and date at job start Fri Apr 10 2020 20:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47418 * 2 1 4 4 C 1.53001 * 109.46874 * 240.00105 * 2 1 3 5 5 N 1.46503 * 109.46981 * 184.99813 * 4 2 1 6 6 C 1.46498 * 119.99982 * 269.99891 * 5 4 2 7 7 C 1.36935 * 119.99494 * 90.00690 * 5 4 2 8 8 H 1.08003 * 120.00569 * 22.33816 * 7 5 4 9 9 C 1.38815 * 119.99526 * 202.34301 * 7 5 4 10 10 N 1.31615 * 120.00376 * 11.35028 * 9 7 5 11 11 Si 1.86806 * 119.99836 * 191.35379 * 9 7 5 12 12 H 1.48501 * 109.47293 * 89.99918 * 11 9 7 13 13 H 1.48499 * 109.47071 * 210.00053 * 11 9 7 14 14 H 1.48503 * 109.47119 * 329.99572 * 11 9 7 15 15 N 1.46501 * 109.47077 * 120.00463 * 2 1 3 16 16 C 1.34771 * 120.00168 * 274.99514 * 15 2 1 17 17 O 1.21554 * 119.99754 * 0.02562 * 16 15 2 18 18 C 1.47873 * 120.00336 * 180.02562 * 16 15 2 19 19 N 1.32847 * 119.72237 * 359.72908 * 18 16 15 20 20 C 1.31369 * 121.68660 * 179.71206 * 19 18 16 21 21 C 1.38994 * 120.93494 * 0.56556 * 20 19 18 22 22 F 1.35103 * 120.32910 * 179.74976 * 21 20 19 23 23 C 1.38721 * 119.34188 * 359.72361 * 21 20 19 24 24 C 1.38827 * 118.45263 * 359.97438 * 23 21 20 25 25 F 1.35095 * 120.48885 * 179.97438 * 24 23 21 26 26 H 1.09001 * 109.47299 * 59.99396 * 1 2 3 27 27 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46748 * 300.00102 * 1 2 3 29 29 H 1.08997 * 109.47246 * 305.00459 * 4 2 1 30 30 H 1.09007 * 109.47074 * 65.00252 * 4 2 1 31 31 H 1.09002 * 109.46941 * 94.23223 * 6 5 4 32 32 H 1.09000 * 109.46999 * 214.22758 * 6 5 4 33 33 H 1.08992 * 109.47487 * 334.22872 * 6 5 4 34 34 H 0.96995 * 120.00508 * 180.02562 * 10 9 7 35 35 H 0.97005 * 120.00086 * 94.99998 * 15 2 1 36 36 H 1.08000 * 119.52685 * 180.26905 * 20 19 18 37 37 H 1.08005 * 120.77556 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3342 0.2341 -1.7614 7 6 4.0849 -1.9159 -0.6025 8 1 3.5337 -2.8400 -0.5089 9 6 5.3862 -1.8326 -0.1264 10 7 5.9794 -0.6614 -0.0339 11 14 6.2954 -3.3830 0.3828 12 1 7.0229 -3.9371 -0.7873 13 1 7.2648 -3.0572 1.4595 14 1 5.3213 -4.3871 0.8809 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0185 2.3571 17 8 1.8577 1.1608 2.4119 18 6 2.6406 -0.7155 3.5643 19 7 2.9502 -2.0058 3.4996 20 6 3.3971 -2.6615 4.5465 21 6 3.5529 -2.0276 5.7736 22 9 4.0087 -2.7151 6.8436 23 6 3.2363 -0.6819 5.8886 24 6 2.7722 -0.0132 4.7640 25 9 2.4512 1.2975 4.8297 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6053 -1.7197 -1.2953 30 1 1.7516 -0.1582 -2.1370 31 1 4.6023 0.9455 -0.9803 32 1 5.2403 -0.2028 -2.1813 33 1 3.7810 0.7484 -2.5471 34 1 6.8888 -0.6032 0.2984 35 1 2.2490 -1.6319 1.1525 36 1 3.6423 -3.7092 4.4535 37 1 3.3489 -0.1663 6.8309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754314955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:50 Heat of formation + Delta-G solvation = -80.379141 kcal Electronic energy + Delta-G solvation = -25001.472390 eV Core-core repulsion = 21029.290966 eV Total energy + Delta-G solvation = -3972.181424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.28340 -50.22746 -41.56302 -40.12756 -38.00977 -35.74325 -33.87194 -33.09995 -32.35439 -31.14401 -28.01847 -27.34882 -26.13979 -25.03235 -23.61657 -22.41771 -21.30323 -19.59446 -19.39875 -18.98891 -18.51481 -17.51447 -17.16567 -17.00867 -16.81094 -16.60832 -16.25353 -15.87720 -15.59752 -15.51089 -14.98823 -14.88401 -14.47152 -14.43419 -14.17906 -13.87488 -13.66991 -13.33756 -13.07003 -12.85880 -12.72032 -12.49002 -12.14232 -11.96269 -11.92168 -11.66957 -11.44940 -11.10214 -10.88546 -10.56842 -10.24649 -9.81841 -8.73764 -7.74168 -5.21268 -0.86692 -0.33953 1.48047 1.50621 1.52574 1.58146 2.06384 2.46432 2.49377 2.56620 2.76717 2.95749 3.38057 3.41704 3.49088 3.74665 3.86294 4.14200 4.19742 4.37587 4.45367 4.53990 4.56859 4.78038 4.86383 4.92460 5.01442 5.17573 5.23656 5.35829 5.40699 5.67645 5.70477 5.76841 6.25729 6.38196 6.68953 7.20821 7.25814 7.93294 8.38576 9.29476 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.012137 B = 0.007020 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.534740 B = 3987.414522 C = 5497.281128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.116 3.884 3 H 0.045 0.955 4 C 0.141 3.859 5 N -0.613 5.613 6 C 0.179 3.821 7 C -0.241 4.241 8 H 0.080 0.920 9 C -0.046 4.046 10 N -0.938 5.938 11 Si 0.950 3.050 12 H -0.295 1.295 13 H -0.306 1.306 14 H -0.252 1.252 15 N -0.661 5.661 16 C 0.558 3.442 17 O -0.577 6.577 18 C 0.024 3.976 19 N -0.410 5.410 20 C 0.069 3.931 21 C 0.114 3.886 22 F -0.106 7.106 23 C -0.141 4.141 24 C 0.121 3.879 25 F -0.112 7.112 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.079 0.921 31 H -0.010 1.010 32 H 0.019 0.981 33 H 0.029 0.971 34 H 0.240 0.760 35 H 0.414 0.586 36 H 0.212 0.788 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 -4.632 9.632 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 H 0.063 0.937 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.034 3.966 7 C -0.371 4.371 8 H 0.097 0.903 9 C -0.241 4.241 10 N -0.585 5.585 11 Si 0.779 3.221 12 H -0.223 1.223 13 H -0.234 1.234 14 H -0.176 1.176 15 N -0.309 5.309 16 C 0.342 3.658 17 O -0.458 6.458 18 C -0.114 4.114 19 N -0.120 5.120 20 C -0.094 4.094 21 C 0.092 3.908 22 F -0.085 7.085 23 C -0.168 4.168 24 C 0.098 3.902 25 F -0.090 7.090 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.009 0.991 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.252 0.748 36 H 0.228 0.772 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.969 -4.167 8.849 13.270 hybrid contribution 1.427 -0.085 1.303 1.934 sum -7.541 -4.252 10.152 13.342 Atomic orbital electron populations 1.22029 0.93299 1.02823 1.02312 1.21905 0.94503 0.96398 0.86332 0.93715 1.21413 0.83262 0.99503 0.94366 1.44153 1.00879 1.22051 1.66397 1.20490 0.92791 0.89940 0.93367 1.19415 0.96907 0.90195 1.30613 0.90271 1.25629 0.99835 0.98214 1.00374 1.70275 1.12880 1.23571 1.51800 0.85499 0.78838 0.80835 0.76890 1.22259 1.23354 1.17574 1.45646 1.62491 1.14818 1.07911 1.17864 0.78312 0.85809 0.83790 1.90750 1.53388 1.16052 1.85568 1.21444 1.04327 0.91720 0.93914 1.67736 1.07506 1.06205 1.30562 1.23639 0.96952 1.02934 0.85864 1.18629 0.97118 0.89772 0.85325 1.91607 1.85460 1.78464 1.52920 1.21857 1.00697 0.93865 1.00351 1.18510 0.98260 0.79588 0.93844 1.91601 1.89372 1.31394 1.96614 0.89529 0.90987 0.94170 0.91259 0.90332 0.99147 0.96245 0.95269 0.95110 0.74849 0.77195 0.78301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.48 71.98 0.68 -3.46 16 2 C 0.12 4.31 2.88 44.99 0.13 4.44 16 3 H 0.04 1.97 7.58 -2.39 -0.02 1.95 16 4 C 0.14 5.16 5.36 86.38 0.46 5.62 16 5 N -0.61 -28.84 2.82 -726.93 -2.05 -30.89 16 6 C 0.18 8.88 9.01 127.77 1.15 10.03 16 7 C -0.24 -12.12 8.02 84.03 0.67 -11.45 16 8 H 0.08 3.76 7.84 -2.91 -0.02 3.74 16 9 C -0.05 -2.45 5.13 84.86 0.44 -2.01 16 10 N -0.94 -55.17 10.59 21.65 0.23 -54.94 16 11 Si 0.95 43.26 29.57 68.60 2.03 45.29 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.31 -14.47 7.11 99.48 0.71 -13.77 16 14 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 15 N -0.66 -26.61 4.48 -445.38 -1.99 -28.60 16 16 C 0.56 23.88 7.77 86.80 0.67 24.55 16 17 O -0.58 -27.61 14.97 -3.88 -0.06 -27.67 16 18 C 0.02 0.88 6.75 41.88 0.28 1.16 16 19 N -0.41 -13.44 9.53 -184.61 -1.76 -15.20 16 20 C 0.07 1.68 11.17 84.94 0.95 2.63 16 21 C 0.11 2.43 7.35 22.57 0.17 2.59 16 22 F -0.11 -1.97 17.28 44.97 0.78 -1.19 16 23 C -0.14 -3.17 10.14 22.53 0.23 -2.94 16 24 C 0.12 3.85 7.31 22.75 0.17 4.02 16 25 F -0.11 -3.95 15.54 44.97 0.70 -3.25 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 2.29 8.03 -2.39 -0.02 2.27 16 30 H 0.08 2.50 7.86 -2.38 -0.02 2.48 16 31 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 32 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 33 H 0.03 1.22 7.84 -2.39 -0.02 1.20 16 34 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.41 16.59 6.72 -92.70 -0.62 15.96 16 36 H 0.21 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.20 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -69.10 325.82 4.37 -64.73 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.49 Total: 16.56 kcal Atomic # 6 Polarization: 29.16 SS G_CDS: 6.00 Total: 35.16 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -5.57 Total: -129.63 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.06 Total: -27.67 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 1.48 Total: -4.44 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -69.10 4.37 -64.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754314955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.648 kcal (2) G-P(sol) polarization free energy of solvation -69.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds