Wall clock time and date at job start Fri Apr 10 2020 20:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47399 * 2 1 4 4 C 1.52999 * 109.47094 * 120.00198 * 2 1 3 5 5 N 1.46497 * 109.47523 * 175.00061 * 4 2 1 6 6 C 1.46500 * 119.99781 * 270.00131 * 5 4 2 7 7 C 1.36939 * 120.00240 * 89.99142 * 5 4 2 8 8 H 1.08006 * 119.99578 * 23.64061 * 7 5 4 9 9 C 1.38811 * 120.00287 * 203.63258 * 7 5 4 10 10 N 1.31622 * 119.99747 * 11.29225 * 9 7 5 11 11 Si 1.86795 * 120.00237 * 191.29004 * 9 7 5 12 12 H 1.48496 * 109.47241 * 89.99954 * 11 9 7 13 13 H 1.48501 * 109.47329 * 210.00266 * 11 9 7 14 14 H 1.48504 * 109.46975 * 330.00391 * 11 9 7 15 15 N 1.46507 * 109.47005 * 239.99726 * 2 1 3 16 16 C 1.34775 * 119.99802 * 85.00606 * 15 2 1 17 17 O 1.21546 * 119.99979 * 359.97438 * 16 15 2 18 18 C 1.47883 * 119.99836 * 179.97438 * 16 15 2 19 19 N 1.32846 * 119.71907 * 359.72710 * 18 16 15 20 20 C 1.31372 * 121.68249 * 179.70523 * 19 18 16 21 21 C 1.39002 * 120.93583 * 0.57298 * 20 19 18 22 22 F 1.35096 * 120.32873 * 179.74326 * 21 20 19 23 23 C 1.38718 * 119.33898 * 359.71576 * 21 20 19 24 24 C 1.38834 * 118.45143 * 0.02562 * 23 21 20 25 25 F 1.35106 * 120.48325 * 179.97438 * 24 23 21 26 26 H 1.09003 * 109.47352 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46905 * 300.00424 * 1 2 3 28 28 H 1.09005 * 109.46887 * 60.00222 * 1 2 3 29 29 H 1.09005 * 109.46720 * 294.99934 * 4 2 1 30 30 H 1.08994 * 109.47263 * 54.99764 * 4 2 1 31 31 H 1.09001 * 109.47336 * 94.55979 * 6 5 4 32 32 H 1.08999 * 109.46978 * 214.55988 * 6 5 4 33 33 H 1.09003 * 109.46957 * 334.55257 * 6 5 4 34 34 H 0.96998 * 119.99842 * 179.97438 * 10 9 7 35 35 H 0.96993 * 120.00030 * 264.99942 * 15 2 1 36 36 H 1.07999 * 119.53098 * 180.26511 * 20 19 18 37 37 H 1.08008 * 120.77659 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9920 0.5612 7 6 4.2799 0.1648 1.7240 8 1 3.8834 0.8068 2.4968 9 6 5.5799 0.3443 1.2717 10 7 5.9918 -0.2796 0.1884 11 14 6.7447 1.4714 2.2002 12 1 7.4751 0.6889 3.2294 13 1 7.7171 2.0694 1.2505 14 1 5.9677 2.5519 2.8591 15 7 2.0183 -0.6907 -1.1962 16 6 2.1471 -0.0183 -2.3571 17 8 1.8577 1.1609 -2.4118 18 6 2.6406 -0.7154 -3.5644 19 7 2.9604 -2.0030 -3.4970 20 6 3.3970 -2.6614 -4.5466 21 6 3.5530 -2.0274 -5.7738 22 9 4.0078 -2.7151 -6.8440 23 6 3.2363 -0.6818 -5.8887 24 6 2.7722 -0.0131 -4.7640 25 9 2.4522 1.2979 -4.8295 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.7516 -0.1583 2.1370 30 1 1.6054 -1.7198 1.2951 31 1 4.3537 -1.7641 -0.4800 32 1 5.0468 -2.2392 1.0891 33 1 3.4423 -2.8400 0.6065 34 1 6.9001 -0.1539 -0.1279 35 1 2.2490 -1.6318 -1.1526 36 1 3.6430 -3.7089 -4.4535 37 1 3.3482 -0.1662 -6.8312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754314956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:53 Heat of formation + Delta-G solvation = -60.197714 kcal Electronic energy + Delta-G solvation = -24739.305640 eV Core-core repulsion = 20767.999348 eV Total energy + Delta-G solvation = -3971.306291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.37758 -49.02629 -40.38779 -38.76312 -36.32483 -34.03765 -32.75408 -31.51589 -30.84634 -29.86092 -26.13746 -25.60856 -24.97657 -23.95767 -22.00811 -20.78193 -19.94082 -18.43011 -18.28986 -17.69889 -16.74540 -16.44706 -16.05850 -15.58898 -15.51841 -15.13988 -14.79914 -14.64351 -14.35362 -13.69501 -13.59310 -13.46505 -13.20243 -13.04175 -12.78202 -12.61038 -12.12350 -11.93213 -11.41835 -11.07259 -10.82591 -10.77309 -10.52825 -10.32932 -10.15630 -10.09320 -9.93148 -9.84038 -9.52582 -9.09970 -8.58072 -8.36144 -6.72028 -5.70061 -3.16746 0.23692 0.65534 2.74976 3.27402 3.40387 3.46923 3.48075 3.54438 3.75916 3.85885 4.02715 4.31618 4.51862 4.57189 4.90305 5.22069 5.35004 5.45384 5.49442 5.51480 5.70119 5.86969 6.00619 6.12280 6.23124 6.25760 6.48743 6.54594 6.70547 6.87922 7.11608 7.32896 7.36963 7.74529 7.83428 8.07515 8.41802 8.68147 9.25571 9.87954 10.36339 11.34554 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.005102 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.630958 B = 5487.239936 C = 6130.952208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 H 0.088 0.912 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.161 3.839 7 C -0.256 4.256 8 H 0.068 0.932 9 C 0.005 3.995 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.279 1.279 15 N -0.671 5.671 16 C 0.570 3.430 17 O -0.532 6.532 18 C 0.053 3.947 19 N -0.394 5.394 20 C 0.067 3.933 21 C 0.095 3.905 22 F -0.120 7.120 23 C -0.160 4.160 24 C 0.139 3.861 25 F -0.096 7.096 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.041 0.959 33 H -0.005 1.005 34 H 0.250 0.750 35 H 0.406 0.594 36 H 0.182 0.818 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 -6.166 -10.866 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.106 0.894 4 C 0.015 3.985 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.385 4.385 8 H 0.086 0.914 9 C -0.194 4.194 10 N -0.548 5.548 11 Si 0.734 3.266 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.205 1.205 15 N -0.320 5.320 16 C 0.352 3.648 17 O -0.408 6.408 18 C -0.086 4.086 19 N -0.104 5.104 20 C -0.095 4.095 21 C 0.073 3.927 22 F -0.098 7.098 23 C -0.187 4.187 24 C 0.115 3.885 25 F -0.074 7.074 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.014 0.986 34 H 0.060 0.940 35 H 0.242 0.758 36 H 0.199 0.801 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.191 -5.704 -10.132 14.223 hybrid contribution 1.213 0.745 -0.809 1.637 sum -6.978 -4.959 -10.941 13.892 Atomic orbital electron populations 1.22156 0.96598 1.01250 1.01820 1.22007 0.91870 0.99310 0.86147 0.89381 1.21202 0.85895 0.97289 0.94152 1.43907 0.99019 1.20931 1.68117 1.20862 0.94460 0.84991 0.98035 1.19179 0.94572 1.10578 1.14206 0.91413 1.25028 0.98922 0.99070 0.96340 1.70052 1.17087 1.45652 1.22011 0.86269 0.80974 0.80475 0.78894 1.21577 1.21873 1.20490 1.45615 1.63719 1.14320 1.08320 1.17375 0.78759 0.86003 0.82618 1.90816 1.50962 1.14497 1.84556 1.21754 1.01893 0.90778 0.94216 1.67751 1.06735 1.06670 1.29257 1.23069 0.98559 1.01684 0.86174 1.18738 0.98521 0.89982 0.85481 1.91563 1.85894 1.78749 1.53588 1.21623 1.02735 0.93948 1.00346 1.18332 0.96938 0.79981 0.93213 1.91657 1.88967 1.30286 1.96522 0.93050 0.91864 0.92934 0.92118 0.93887 0.94678 0.94007 0.98642 0.93957 0.75756 0.80131 0.81749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.48 37.16 0.35 -2.04 16 2 C 0.11 2.16 2.88 -67.93 -0.20 1.96 16 3 H 0.09 1.99 7.58 -51.93 -0.39 1.60 16 4 C 0.14 2.77 5.33 -4.04 -0.02 2.75 16 5 N -0.60 -14.42 2.78 -181.12 -0.50 -14.93 16 6 C 0.16 3.79 7.61 59.85 0.46 4.24 16 7 C -0.26 -6.94 9.66 -15.06 -0.15 -7.08 16 8 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 9 C 0.00 0.14 5.13 -17.43 -0.09 0.05 16 10 N -0.90 -26.15 10.66 55.49 0.59 -25.56 16 11 Si 0.90 22.19 29.57 -169.99 -5.03 17.16 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 N -0.67 -12.80 4.40 -54.74 -0.24 -13.04 16 16 C 0.57 11.44 7.77 -12.31 -0.10 11.35 16 17 O -0.53 -12.10 14.97 5.33 0.08 -12.02 16 18 C 0.05 0.91 6.75 -82.96 -0.56 0.35 16 19 N -0.39 -5.90 9.53 -9.70 -0.09 -5.99 16 20 C 0.07 0.77 11.17 -17.47 -0.20 0.58 16 21 C 0.09 1.03 7.35 -39.12 -0.29 0.74 16 22 F -0.12 -1.20 17.28 2.25 0.04 -1.16 16 23 C -0.16 -1.83 10.14 -39.18 -0.40 -2.23 16 24 C 0.14 2.10 7.31 -38.84 -0.28 1.82 16 25 F -0.10 -1.63 15.54 2.25 0.04 -1.59 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 30 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 31 H 0.03 0.89 6.90 -51.93 -0.36 0.53 16 32 H 0.04 1.08 7.30 -51.93 -0.38 0.70 16 33 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 35 H 0.41 7.39 6.49 -40.82 -0.27 7.13 16 36 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -31.86 325.35 -5.97 -37.83 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.29 Total: 1.91 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -1.46 Total: 12.49 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.25 Total: -59.52 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.07 Total: -2.75 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.86 -5.97 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754314956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.371 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds