Wall clock time and date at job start Fri Apr 10 2020 20:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 120.00259 * 2 1 4 4 H 1.48495 * 109.46863 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.46936 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46905 * 120.00048 * 3 2 1 7 7 C 1.37883 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99954 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47232 * 180.02562 * 9 7 2 11 11 C 1.81400 * 103.00010 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46923 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00388 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99702 * 179.97438 * 12 11 10 15 15 C 1.47167 * 121.18756 * 0.02562 * 14 12 11 16 16 C 1.53242 * 108.77377 * 129.18729 * 15 14 12 17 17 O 1.43054 * 109.40836 * 51.66298 * 16 15 14 18 18 C 1.42720 * 113.94235 * 298.22874 * 17 16 15 19 19 H 1.09003 * 109.00333 * 304.57733 * 18 17 16 20 20 C 1.52523 * 110.46559 * 184.83595 * 18 17 16 21 21 C 1.52973 * 109.91721 * 297.50996 * 20 18 17 22 22 C 1.53067 * 109.17219 * 300.22006 * 21 20 18 23 23 C 1.52896 * 109.28426 * 60.72194 * 22 21 20 24 24 C 1.47588 * 121.22178 * 179.78368 * 14 12 11 25 25 H 1.09002 * 110.88444 * 352.28452 * 24 14 12 26 26 H 0.96999 * 119.99752 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47189 * 59.99212 * 9 7 2 28 28 H 1.09003 * 109.47078 * 299.99542 * 9 7 2 29 29 H 1.08994 * 109.47530 * 59.99753 * 11 10 9 30 30 H 1.08997 * 109.46666 * 299.99317 * 11 10 9 31 31 H 1.09002 * 109.61049 * 9.35879 * 15 14 12 32 32 H 1.09004 * 109.60934 * 249.01659 * 15 14 12 33 33 H 1.09007 * 109.48082 * 171.64085 * 16 15 14 34 34 H 1.08999 * 109.48335 * 291.67960 * 16 15 14 35 35 H 1.08994 * 109.40306 * 57.65177 * 20 18 17 36 36 H 1.09003 * 109.39781 * 177.38170 * 20 18 17 37 37 H 1.09002 * 109.52023 * 60.12411 * 21 20 18 38 38 H 1.09005 * 109.52338 * 180.30854 * 21 20 18 39 39 H 1.09002 * 109.50013 * 180.66749 * 22 21 20 40 40 H 1.08996 * 109.49989 * 300.73748 * 22 21 20 41 41 H 1.08997 * 109.41938 * 59.49612 * 23 22 21 42 42 H 1.09002 * 109.41159 * 179.36025 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0021 11 6 1.3513 -5.3367 0.0011 12 6 2.1953 -6.5852 0.0016 13 8 3.4050 -6.4995 0.0030 14 7 1.6056 -7.7971 0.0015 15 6 0.1401 -7.9316 0.0004 16 6 -0.2664 -8.8899 -1.1241 17 8 0.4867 -10.1010 -1.0120 18 6 1.8963 -9.9209 -1.1444 19 1 2.1027 -9.4187 -2.0896 20 6 2.6097 -11.2689 -1.1321 21 6 2.3793 -11.9682 0.2088 22 6 2.9263 -11.0881 1.3353 23 6 2.1870 -9.7498 1.3349 24 6 2.4058 -9.0373 -0.0027 25 1 3.4640 -8.8164 -0.1423 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 0.7231 -5.3236 -0.8895 30 1 0.7213 -5.3233 0.8904 31 1 -0.3167 -6.9562 -0.1672 32 1 -0.1914 -8.3308 0.9590 33 1 -1.3301 -9.1145 -1.0436 34 1 -0.0650 -8.4245 -2.0890 35 1 2.2201 -11.8921 -1.9370 36 1 3.6784 -11.1143 -1.2807 37 1 1.3113 -12.1281 0.3574 38 1 2.8961 -12.9280 0.2126 39 1 2.7755 -11.5870 2.2926 40 1 3.9912 -10.9163 1.1783 41 1 1.1212 -9.9246 1.4823 42 1 2.5671 -9.1257 2.1436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332688694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:51 Heat of formation + Delta-G solvation = -91.354531 kcal Electronic energy + Delta-G solvation = -22501.785814 eV Core-core repulsion = 19186.509191 eV Total energy + Delta-G solvation = -3315.276622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95990 -38.66376 -36.48250 -35.01397 -33.14694 -31.16342 -30.89486 -29.50594 -28.50785 -27.69044 -23.90282 -23.17987 -22.91384 -22.53211 -19.86751 -19.06197 -17.33712 -16.88668 -16.44595 -16.26598 -15.95532 -15.60652 -15.19595 -15.08882 -14.42035 -14.18891 -14.09824 -13.73949 -13.45933 -13.09662 -12.83720 -12.58817 -12.50132 -12.34368 -12.28105 -12.11772 -11.90180 -11.61274 -11.29259 -10.94389 -10.84879 -10.75364 -10.68896 -10.47014 -10.20879 -10.02785 -9.72330 -9.54970 -8.77900 -8.64462 -8.60803 -6.66285 -6.20080 -4.23838 2.25444 2.69574 2.93227 3.29215 3.31675 3.36802 3.39971 3.81123 4.29374 4.35866 4.44268 4.55476 4.59976 4.67623 4.80227 4.86279 4.94147 4.96018 5.15600 5.17360 5.18614 5.21565 5.30356 5.34895 5.45393 5.49707 5.52561 5.57952 5.69960 5.76928 5.85034 5.89960 5.99185 6.14637 6.32236 6.86326 7.06631 7.07457 7.24823 7.75130 8.00863 8.20173 8.78069 9.39233 10.91461 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.037303 B = 0.002902 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.422534 B = 9645.807501 C =10016.492525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.075 3.925 10 S -0.235 6.235 11 C -0.129 4.129 12 C 0.538 3.462 13 O -0.512 6.512 14 N -0.619 5.619 15 C 0.071 3.929 16 C 0.048 3.952 17 O -0.371 6.371 18 C 0.084 3.916 19 H 0.059 0.941 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.123 4.123 24 C 0.117 3.883 25 H 0.109 0.891 26 H 0.266 0.734 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 -24.291 -0.580 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.072 4.072 10 S -0.010 6.010 11 C -0.280 4.280 12 C 0.325 3.675 13 O -0.386 6.386 14 N -0.355 5.355 15 C -0.053 4.053 16 C -0.030 4.030 17 O -0.289 6.289 18 C 0.025 3.975 19 H 0.077 0.923 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.162 4.162 24 C 0.014 3.986 25 H 0.127 0.873 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.007 -24.241 -0.547 24.248 hybrid contribution -1.180 1.239 -0.030 1.711 sum -1.173 -23.003 -0.577 23.040 Atomic orbital electron populations 1.69940 1.06146 1.27436 1.49730 1.24955 0.94981 0.99261 0.94601 0.86400 0.79404 0.81758 0.79051 1.19860 1.21060 1.19849 1.20609 0.93508 0.88630 1.52284 0.91447 1.21157 0.94431 0.91593 1.00004 1.87263 1.17431 0.98312 1.97954 1.23393 1.02415 0.96337 1.05808 1.20033 0.88479 0.83533 0.75434 1.90717 1.14057 1.85931 1.47853 1.48343 1.06515 1.05298 1.75345 1.22433 0.80760 1.01769 1.00329 1.22984 0.96703 0.85736 0.97527 1.87907 1.17200 1.30281 1.93556 1.22219 0.81823 0.96433 0.96981 0.92325 1.21432 0.99957 0.94365 0.98850 1.21502 1.02003 0.98040 0.93902 1.21500 0.99910 0.95178 0.98882 1.21790 1.01613 0.96224 0.96557 1.21932 0.97544 0.83314 0.95791 0.87287 0.92464 0.94678 0.94669 0.88229 0.88136 0.88465 0.90372 0.87469 0.92486 0.90777 0.90224 0.91054 0.91839 0.91580 0.91775 0.91079 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.57 9.13 -34.44 -0.31 -14.89 16 8 H 0.07 1.94 7.71 -52.49 -0.40 1.53 16 9 C 0.08 1.96 5.70 36.00 0.21 2.16 16 10 S -0.24 -5.40 20.79 -107.50 -2.24 -7.63 16 11 C -0.13 -2.19 4.80 36.01 0.17 -2.01 16 12 C 0.54 8.95 7.74 -10.98 -0.09 8.87 16 13 O -0.51 -10.47 15.40 5.56 0.09 -10.38 16 14 N -0.62 -7.84 2.69 -164.48 -0.44 -8.28 16 15 C 0.07 0.67 6.02 -3.55 -0.02 0.65 16 16 C 0.05 0.40 6.98 37.28 0.26 0.66 16 17 O -0.37 -3.68 9.47 -35.23 -0.33 -4.01 16 18 C 0.08 0.83 2.76 -26.93 -0.07 0.76 16 19 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 20 C -0.11 -0.85 5.65 -26.99 -0.15 -1.00 16 21 C -0.12 -0.86 5.83 -26.71 -0.16 -1.02 16 22 C -0.12 -0.93 5.92 -26.75 -0.16 -1.09 16 23 C -0.12 -1.23 5.11 -26.72 -0.14 -1.36 16 24 C 0.12 1.34 2.71 -67.22 -0.18 1.16 16 25 H 0.11 1.43 7.18 -51.93 -0.37 1.06 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.94 8.14 -51.92 -0.42 0.51 16 29 H 0.10 1.50 7.67 -51.93 -0.40 1.10 16 30 H 0.10 1.54 8.02 -51.93 -0.42 1.12 16 31 H 0.10 0.85 6.07 -51.93 -0.32 0.54 16 32 H 0.08 0.67 7.36 -51.93 -0.38 0.29 16 33 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.70 6.73 -51.93 -0.35 0.35 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -32.51 342.72 -9.61 -42.12 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -6.83 Total: -2.94 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.74 Total: -5.36 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.29 Total: -33.47 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.25 Total: -14.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -2.24 Total: -7.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.51 -9.61 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332688694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.231 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds