Wall clock time and date at job start Fri Apr 10 2020 20:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47225 * 201.62591 * 3 2 1 5 5 C 1.36721 * 119.99540 * 270.00396 * 4 3 2 6 6 H 1.08002 * 119.99212 * 196.04537 * 5 4 3 7 7 C 1.39120 * 120.00420 * 16.04092 * 5 4 3 8 8 N 1.31327 * 119.99626 * 11.55131 * 7 5 4 9 9 Si 1.86794 * 120.00323 * 191.54496 * 7 5 4 10 10 H 1.48501 * 109.46804 * 89.99969 * 9 7 5 11 11 H 1.48496 * 109.47649 * 210.00325 * 9 7 5 12 12 H 1.48506 * 109.47097 * 330.00513 * 9 7 5 13 13 C 1.34768 * 120.00049 * 89.99848 * 4 3 2 14 14 O 1.21760 * 120.00444 * 355.10554 * 13 4 3 15 15 C 1.46235 * 119.99804 * 175.10414 * 13 4 3 16 16 C 1.34975 * 119.99656 * 175.11998 * 15 13 4 17 17 C 1.50697 * 120.00134 * 6.28121 * 16 15 13 18 18 C 1.47163 * 119.99589 * 186.28058 * 16 15 13 19 19 C 1.39906 * 120.14834 * 295.02233 * 18 16 15 20 20 C 1.37884 * 119.93623 * 179.97438 * 19 18 16 21 21 C 1.38342 * 120.23068 * 359.72342 * 20 19 18 22 22 C 1.38869 * 120.29855 * 0.55848 * 21 20 19 23 23 O 1.35914 * 119.96886 * 179.72540 * 22 21 20 24 24 C 1.42901 * 116.99848 * 359.71753 * 23 22 21 25 25 C 1.38407 * 120.05870 * 359.44031 * 22 21 20 26 26 H 4.40648 * 5.51332 * 180.02562 * 4 1 2 27 27 H 1.09005 * 109.47035 * 81.62599 * 3 2 1 28 28 H 1.08998 * 109.47329 * 321.62093 * 3 2 1 29 29 H 0.97001 * 119.99415 * 184.99184 * 8 7 5 30 30 H 1.07996 * 120.00274 * 355.12145 * 15 13 4 31 31 H 1.08993 * 109.47378 * 301.72529 * 17 16 15 32 32 H 1.09005 * 109.47063 * 61.73295 * 17 16 15 33 33 H 1.09009 * 109.47113 * 181.72659 * 17 16 15 34 34 H 1.07998 * 120.03083 * 359.95524 * 19 18 16 35 35 H 1.07994 * 119.88187 * 180.02562 * 20 19 18 36 36 H 1.08000 * 119.84659 * 180.29368 * 21 20 19 37 37 H 1.09000 * 109.47282 * 60.00801 * 24 23 22 38 38 H 1.09000 * 109.46853 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.47223 * 300.00274 * 24 23 22 40 40 H 1.08003 * 120.11353 * 180.25937 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2849 0.5091 5 6 3.3611 2.3205 -0.3542 6 1 3.9540 3.1662 -0.0385 7 6 2.8289 2.2848 -1.6390 8 7 1.9293 1.3806 -1.9522 9 14 3.3935 3.5228 -2.9187 10 1 4.5612 2.9757 -3.6552 11 1 2.2869 3.7886 -3.8726 12 1 3.7815 4.7884 -2.2457 13 6 3.3583 1.4455 1.8282 14 8 3.0721 0.5547 2.6074 15 6 3.9458 2.6896 2.3237 16 6 4.0799 2.8905 3.6517 17 6 3.7570 1.7803 4.6181 18 6 4.5414 4.1939 4.1557 19 6 5.8341 4.6424 3.8639 20 6 6.2617 5.8645 4.3379 21 6 5.4149 6.6523 5.0968 22 6 4.1318 6.2141 5.3971 23 8 3.3073 6.9911 6.1479 24 6 3.8285 8.2428 6.5993 25 6 3.6899 4.9894 4.9276 26 1 -1.0502 -0.0005 0.0000 27 1 3.0094 -0.1488 -1.0168 28 1 3.0097 -0.8048 0.6380 29 1 1.6115 1.3089 -2.8658 30 1 4.2724 3.4475 1.6272 31 1 2.7224 1.4668 4.4790 32 1 4.4205 0.9350 4.4353 33 1 3.8947 2.1360 5.6393 34 1 6.4964 4.0318 3.2683 35 1 7.2596 6.2100 4.1118 36 1 5.7546 7.6106 5.4610 37 1 4.1033 8.8534 5.7392 38 1 3.0705 8.7615 7.1862 39 1 4.7094 8.0680 7.2172 40 1 2.6907 4.6496 5.1571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281613708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:24 Heat of formation + Delta-G solvation = 43.961751 kcal Electronic energy + Delta-G solvation = -23208.053552 eV Core-core repulsion = 19763.200732 eV Total energy + Delta-G solvation = -3444.852820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.08249 -38.83300 -37.56852 -35.46546 -33.82578 -31.80122 -31.43935 -30.69997 -29.39795 -27.70668 -27.28212 -26.08200 -24.56184 -22.92370 -22.22200 -20.07657 -18.91749 -17.92840 -16.96724 -16.40086 -16.18641 -16.08819 -15.81870 -15.77009 -14.59232 -14.24327 -14.13591 -13.94599 -13.73795 -13.43254 -13.00381 -12.73208 -12.60268 -12.30362 -11.98861 -11.85992 -11.74720 -11.64544 -11.38549 -11.23077 -11.10221 -11.07093 -10.78755 -10.47569 -10.31127 -9.46389 -9.20888 -8.97503 -8.62593 -8.36446 -8.28341 -8.10590 -7.87514 -6.35796 -3.96921 1.22232 1.52036 2.12850 3.10366 3.17494 3.19863 3.21788 3.80174 3.87973 4.10975 4.31748 4.40852 4.75439 4.78929 4.97284 4.99031 5.02755 5.07042 5.25848 5.29543 5.38979 5.51970 5.66506 5.72672 5.78967 5.99190 6.17097 6.24646 6.29307 6.42944 6.47756 6.62143 6.68814 6.77320 6.79427 6.95880 7.06947 7.22654 7.27634 7.33927 7.38238 7.63166 8.28659 8.98668 9.08603 9.41740 9.82644 10.57574 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.003970 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.988855 B = 7050.720448 C = 7919.537755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.085 4.085 3 C 0.242 3.758 4 N -0.428 5.428 5 C -0.334 4.334 6 H 0.104 0.896 7 C 0.034 3.966 8 N -0.855 5.855 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.479 3.521 14 O -0.601 6.601 15 C -0.144 4.144 16 C -0.065 4.065 17 C -0.091 4.091 18 C 0.006 3.994 19 C -0.144 4.144 20 C -0.081 4.081 21 C -0.216 4.216 22 C 0.124 3.876 23 O -0.319 6.319 24 C 0.029 3.971 25 C -0.138 4.138 26 H 0.195 0.805 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.271 0.729 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.499 9.547 10.052 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.087 4.087 3 C 0.120 3.880 4 N -0.144 5.144 5 C -0.462 4.462 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.492 5.492 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.271 3.729 14 O -0.489 6.489 15 C -0.165 4.165 16 C -0.068 4.068 17 C -0.147 4.147 18 C 0.006 3.994 19 C -0.162 4.162 20 C -0.099 4.099 21 C -0.235 4.235 22 C 0.080 3.920 23 O -0.233 6.233 24 C -0.066 4.066 25 C -0.157 4.157 26 H 0.212 0.788 27 H 0.127 0.873 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.013 9.057 10.258 14.947 hybrid contribution 0.133 1.123 -1.047 1.541 sum 6.147 10.180 9.210 15.041 Atomic orbital electron populations 1.24122 0.95271 1.03835 1.07116 1.22996 0.94182 0.96872 0.94673 1.18186 0.84419 0.85331 1.00072 1.43617 1.54812 1.11023 1.04943 1.19765 1.31547 1.00495 0.94348 0.87881 1.25349 0.94527 0.98284 0.98991 1.70018 1.25248 1.34338 1.19625 0.85968 0.78252 0.80463 0.80323 1.20186 1.20862 1.19391 1.17977 0.84738 0.88036 0.82168 1.90662 1.58851 1.44473 1.54917 1.22977 1.00381 0.98586 0.94530 1.20795 0.98874 0.92592 0.94566 1.20767 1.03883 0.95417 0.94673 1.18784 0.93002 0.93071 0.94528 1.21317 0.95687 0.96921 1.02286 1.20817 0.99038 0.93855 0.96184 1.21217 0.94293 1.01950 1.06004 1.18858 0.89409 0.91248 0.92517 1.86081 1.40635 1.30670 1.65867 1.23015 1.00555 0.83803 0.99265 1.20524 1.01028 0.92733 1.01417 0.78762 0.87294 0.91659 0.91797 0.85785 0.89817 0.90711 0.94279 0.85470 0.85819 0.85840 0.92744 0.88450 0.92812 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.67 19.25 29.55 0.57 -6.10 16 2 C -0.09 -2.16 11.20 -37.12 -0.42 -2.57 16 3 C 0.24 5.94 5.14 -6.83 -0.04 5.91 16 4 N -0.43 -10.79 2.58 -119.59 -0.31 -11.10 16 5 C -0.33 -8.34 9.26 -15.04 -0.14 -8.48 16 6 H 0.10 2.43 5.75 -52.49 -0.30 2.12 16 7 C 0.03 0.84 5.15 -17.44 -0.09 0.75 16 8 N -0.86 -21.93 8.59 55.50 0.48 -21.45 16 9 Si 0.92 19.20 29.57 -169.99 -5.03 14.18 16 10 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 13 C 0.48 11.62 7.51 -13.05 -0.10 11.53 16 14 O -0.60 -15.35 12.79 5.14 0.07 -15.28 16 15 C -0.14 -3.00 8.94 -37.53 -0.34 -3.33 16 16 C -0.07 -1.19 5.48 -102.16 -0.56 -1.75 16 17 C -0.09 -1.64 8.35 36.00 0.30 -1.34 16 18 C 0.01 0.10 5.23 -105.07 -0.55 -0.45 16 19 C -0.14 -2.03 9.72 -39.09 -0.38 -2.41 16 20 C -0.08 -0.97 10.02 -39.67 -0.40 -1.37 16 21 C -0.22 -2.59 9.04 -39.31 -0.36 -2.94 16 22 C 0.12 1.72 6.68 -39.29 -0.26 1.46 16 23 O -0.32 -4.08 10.49 -19.47 -0.20 -4.29 16 24 C 0.03 0.23 9.81 101.05 0.99 1.23 16 25 C -0.14 -2.14 9.72 -38.94 -0.38 -2.52 16 26 H 0.20 3.78 7.80 -54.08 -0.42 3.35 16 27 H 0.11 2.68 6.41 -51.93 -0.33 2.35 16 28 H 0.07 1.53 7.49 -51.93 -0.39 1.14 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.12 2.49 6.08 -52.49 -0.32 2.17 16 31 H 0.08 1.68 6.88 -51.93 -0.36 1.32 16 32 H 0.07 1.39 7.59 -51.93 -0.39 1.00 16 33 H 0.04 0.60 7.99 -51.92 -0.41 0.18 16 34 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.14 6.28 -52.49 -0.33 0.81 16 37 H 0.05 0.39 7.64 -51.93 -0.40 0.00 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 40 H 0.13 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -29.80 344.07 -6.83 -36.63 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.88 Total: 8.52 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.14 Total: -12.39 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.17 Total: -32.54 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.14 Total: -19.57 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.80 -6.83 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281613708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.591 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds