Wall clock time and date at job start Fri Apr 10 2020 20:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47225 * 201.62591 * 3 2 1 5 5 C 1.36721 * 119.99540 * 270.00396 * 4 3 2 6 6 H 1.08002 * 119.99212 * 196.04537 * 5 4 3 7 7 C 1.39120 * 120.00420 * 16.04092 * 5 4 3 8 8 N 1.31327 * 119.99626 * 11.55131 * 7 5 4 9 9 Si 1.86794 * 120.00323 * 191.54496 * 7 5 4 10 10 H 1.48501 * 109.46804 * 89.99969 * 9 7 5 11 11 H 1.48496 * 109.47649 * 210.00325 * 9 7 5 12 12 H 1.48506 * 109.47097 * 330.00513 * 9 7 5 13 13 C 1.34768 * 120.00049 * 89.99848 * 4 3 2 14 14 O 1.21760 * 120.00444 * 355.10554 * 13 4 3 15 15 C 1.46235 * 119.99804 * 175.10414 * 13 4 3 16 16 C 1.34975 * 119.99656 * 175.11998 * 15 13 4 17 17 C 1.50697 * 120.00134 * 6.28121 * 16 15 13 18 18 C 1.47163 * 119.99589 * 186.28058 * 16 15 13 19 19 C 1.39906 * 120.14834 * 295.02233 * 18 16 15 20 20 C 1.37884 * 119.93623 * 179.97438 * 19 18 16 21 21 C 1.38342 * 120.23068 * 359.72342 * 20 19 18 22 22 C 1.38869 * 120.29855 * 0.55848 * 21 20 19 23 23 O 1.35914 * 119.96886 * 179.72540 * 22 21 20 24 24 C 1.42901 * 116.99848 * 359.71753 * 23 22 21 25 25 C 1.38407 * 120.05870 * 359.44031 * 22 21 20 26 26 H 4.40648 * 5.51332 * 180.02562 * 4 1 2 27 27 H 1.09005 * 109.47035 * 81.62599 * 3 2 1 28 28 H 1.08998 * 109.47329 * 321.62093 * 3 2 1 29 29 H 0.97001 * 119.99415 * 184.99184 * 8 7 5 30 30 H 1.07996 * 120.00274 * 355.12145 * 15 13 4 31 31 H 1.08993 * 109.47378 * 301.72529 * 17 16 15 32 32 H 1.09005 * 109.47063 * 61.73295 * 17 16 15 33 33 H 1.09009 * 109.47113 * 181.72659 * 17 16 15 34 34 H 1.07998 * 120.03083 * 359.95524 * 19 18 16 35 35 H 1.07994 * 119.88187 * 180.02562 * 20 19 18 36 36 H 1.08000 * 119.84659 * 180.29368 * 21 20 19 37 37 H 1.09000 * 109.47282 * 60.00801 * 24 23 22 38 38 H 1.09000 * 109.46853 * 180.02562 * 24 23 22 39 39 H 1.09004 * 109.47223 * 300.00274 * 24 23 22 40 40 H 1.08003 * 120.11353 * 180.25937 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2849 0.5091 5 6 3.3611 2.3205 -0.3542 6 1 3.9540 3.1662 -0.0385 7 6 2.8289 2.2848 -1.6390 8 7 1.9293 1.3806 -1.9522 9 14 3.3935 3.5228 -2.9187 10 1 4.5612 2.9757 -3.6552 11 1 2.2869 3.7886 -3.8726 12 1 3.7815 4.7884 -2.2457 13 6 3.3583 1.4455 1.8282 14 8 3.0721 0.5547 2.6074 15 6 3.9458 2.6896 2.3237 16 6 4.0799 2.8905 3.6517 17 6 3.7570 1.7803 4.6181 18 6 4.5414 4.1939 4.1557 19 6 5.8341 4.6424 3.8639 20 6 6.2617 5.8645 4.3379 21 6 5.4149 6.6523 5.0968 22 6 4.1318 6.2141 5.3971 23 8 3.3073 6.9911 6.1479 24 6 3.8285 8.2428 6.5993 25 6 3.6899 4.9894 4.9276 26 1 -1.0502 -0.0005 0.0000 27 1 3.0094 -0.1488 -1.0168 28 1 3.0097 -0.8048 0.6380 29 1 1.6115 1.3089 -2.8658 30 1 4.2724 3.4475 1.6272 31 1 2.7224 1.4668 4.4790 32 1 4.4205 0.9350 4.4353 33 1 3.8947 2.1360 5.6393 34 1 6.4964 4.0318 3.2683 35 1 7.2596 6.2100 4.1118 36 1 5.7546 7.6106 5.4610 37 1 4.1033 8.8534 5.7392 38 1 3.0705 8.7615 7.1862 39 1 4.7094 8.0680 7.2172 40 1 2.6907 4.6496 5.1571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281613708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:23 Heat of formation + Delta-G solvation = 28.927257 kcal Electronic energy + Delta-G solvation = -23208.705496 eV Core-core repulsion = 19763.200732 eV Total energy + Delta-G solvation = -3445.504764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11981 -40.58705 -38.68124 -37.24126 -35.30408 -33.67659 -33.32893 -31.74352 -30.56476 -29.33770 -28.06991 -27.85572 -26.37233 -24.19261 -23.25382 -21.59399 -20.55608 -19.42088 -18.53082 -18.14394 -17.68763 -17.14145 -16.85132 -16.61719 -16.28073 -16.05629 -15.86497 -15.35468 -14.85087 -14.62112 -14.54667 -14.26650 -13.93856 -13.81403 -13.47594 -13.33903 -13.29167 -12.91804 -12.78944 -12.76034 -12.54072 -12.13034 -12.06393 -11.94147 -11.78175 -11.31599 -11.11563 -10.54646 -10.32300 -10.14244 -9.87316 -9.56641 -9.15748 -8.21419 -5.90204 0.03007 0.48078 0.65297 1.47288 1.48084 1.58563 2.01825 2.32517 2.36878 2.45406 2.53605 2.75845 3.18019 3.22933 3.75459 3.88324 3.98195 4.10565 4.17542 4.31101 4.36026 4.43346 4.45469 4.53514 4.65228 4.68471 4.76259 4.82017 4.90451 5.01171 5.02258 5.17772 5.27622 5.39806 5.42898 5.44052 5.47878 5.62217 5.66990 5.75991 5.83735 6.39362 6.46530 7.09372 7.18689 7.54433 7.94418 8.71939 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.003970 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.988855 B = 7050.720448 C = 7919.537755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.129 4.129 3 C 0.245 3.755 4 N -0.442 5.442 5 C -0.354 4.354 6 H 0.112 0.888 7 C -0.007 4.007 8 N -0.881 5.881 9 Si 0.992 3.008 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.262 1.262 13 C 0.471 3.529 14 O -0.624 6.624 15 C -0.178 4.178 16 C -0.029 4.029 17 C -0.089 4.089 18 C -0.020 4.020 19 C -0.151 4.151 20 C -0.073 4.073 21 C -0.205 4.205 22 C 0.119 3.881 23 O -0.339 6.339 24 C 0.018 3.982 25 C -0.157 4.157 26 H 0.231 0.769 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.270 0.730 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.133 0.867 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.864 12.512 10.887 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.131 4.131 3 C 0.122 3.878 4 N -0.158 5.158 5 C -0.481 4.481 6 H 0.130 0.870 7 C -0.209 4.209 8 N -0.519 5.519 9 Si 0.816 3.184 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.186 1.186 13 C 0.265 3.735 14 O -0.514 6.514 15 C -0.198 4.198 16 C -0.032 4.032 17 C -0.145 4.145 18 C -0.020 4.020 19 C -0.169 4.169 20 C -0.091 4.091 21 C -0.223 4.223 22 C 0.074 3.926 23 O -0.254 6.254 24 C -0.076 4.076 25 C -0.176 4.176 26 H 0.248 0.752 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.389 12.031 11.107 17.964 hybrid contribution -0.307 0.281 -1.098 1.175 sum 7.082 12.312 10.009 17.376 Atomic orbital electron populations 1.25025 0.96313 1.02287 1.05526 1.23434 0.95062 0.98395 0.96193 1.18088 0.84654 0.85506 0.99511 1.43795 1.55364 1.11263 1.05425 1.20107 1.32230 1.00937 0.94864 0.87032 1.26188 0.94333 0.99956 1.00465 1.70148 1.26118 1.35820 1.19773 0.84930 0.77601 0.78394 0.77509 1.19388 1.21377 1.18574 1.18566 0.84243 0.88861 0.81873 1.90627 1.59844 1.45561 1.55388 1.22759 1.03682 0.97735 0.95628 1.21055 0.94865 0.93571 0.93660 1.20716 1.02165 0.95311 0.96294 1.18665 0.94488 0.92338 0.96497 1.21462 0.94867 0.98063 1.02489 1.21209 1.00489 0.92578 0.94801 1.21624 0.93126 1.02981 1.04559 1.18933 0.90305 0.90861 0.92495 1.86062 1.41399 1.32269 1.65631 1.23369 1.01983 0.82104 1.00188 1.20484 1.00711 0.94066 1.02330 0.75226 0.88056 0.91837 0.91969 0.85347 0.92056 0.91438 0.91527 0.84932 0.82273 0.82449 0.91575 0.86545 0.91212 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.84 19.25 74.32 1.43 -11.40 16 2 C -0.13 -6.70 11.20 31.12 0.35 -6.35 16 3 C 0.24 12.57 5.14 84.57 0.43 13.01 16 4 N -0.44 -23.15 2.58 -650.46 -1.68 -24.82 16 5 C -0.35 -18.07 9.26 84.14 0.78 -17.29 16 6 H 0.11 5.33 5.75 -2.91 -0.02 5.31 16 7 C -0.01 -0.34 5.15 84.98 0.44 0.09 16 8 N -0.88 -46.01 8.59 21.69 0.19 -45.83 16 9 Si 0.99 39.37 29.57 68.60 2.03 41.40 16 10 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 11 H -0.29 -11.56 7.11 99.48 0.71 -10.86 16 12 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 13 C 0.47 23.82 7.51 86.32 0.65 24.46 16 14 O -0.62 -33.32 12.79 -4.54 -0.06 -33.38 16 15 C -0.18 -7.59 8.94 23.60 0.21 -7.38 16 16 C -0.03 -1.06 5.48 -18.27 -0.10 -1.16 16 17 C -0.09 -3.25 8.35 71.24 0.59 -2.65 16 18 C -0.02 -0.62 5.23 -20.16 -0.11 -0.72 16 19 C -0.15 -3.94 9.72 22.59 0.22 -3.72 16 20 C -0.07 -1.48 10.02 22.21 0.22 -1.26 16 21 C -0.20 -4.10 9.04 22.45 0.20 -3.90 16 22 C 0.12 3.05 6.68 22.46 0.15 3.19 16 23 O -0.34 -7.96 10.49 -92.59 -0.97 -8.93 16 24 C 0.02 0.22 9.81 113.37 1.11 1.34 16 25 C -0.16 -4.76 9.72 22.68 0.22 -4.54 16 26 H 0.23 8.60 7.80 -4.41 -0.03 8.57 16 27 H 0.10 5.25 6.41 -2.38 -0.02 5.23 16 28 H 0.06 3.17 7.49 -2.39 -0.02 3.15 16 29 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 30 H 0.13 5.28 6.08 -2.91 -0.02 5.26 16 31 H 0.06 2.55 6.88 -2.39 -0.02 2.54 16 32 H 0.07 2.58 7.59 -2.38 -0.02 2.56 16 33 H 0.07 2.03 7.99 -2.38 -0.02 2.01 16 34 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.16 2.05 6.28 -2.91 -0.02 2.04 16 37 H 0.07 0.70 7.64 -2.39 -0.02 0.68 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.68 7.67 -2.38 -0.02 0.66 16 40 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -66.11 344.07 7.37 -58.74 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 1.05 Total: 31.10 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 6.81 Total: -18.27 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -1.49 Total: -70.65 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.03 Total: -42.31 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -66.11 7.37 -58.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281613708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.667 kcal (2) G-P(sol) polarization free energy of solvation -66.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds