Wall clock time and date at job start Fri Apr 10 2020 20:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50700 * 119.99774 * 2 1 4 4 C 1.53040 * 109.45884 * 119.99925 * 3 2 1 5 5 C 1.53191 * 109.31003 * 181.38462 * 4 3 2 6 6 N 1.46932 * 108.77559 * 305.36059 * 5 4 3 7 7 S 1.65596 * 120.63556 * 233.58789 * 6 5 4 8 8 O 1.42103 * 104.27583 * 333.92947 * 7 6 5 9 9 O 1.42096 * 104.27655 * 206.07654 * 7 6 5 10 10 C 1.81394 * 104.44837 * 89.99919 * 7 6 5 11 11 C 1.53004 * 109.47183 * 187.90248 * 10 7 6 12 12 C 1.50708 * 115.56055 * 320.22117 * 11 10 7 13 13 H 1.07996 * 120.00094 * 99.35997 * 12 11 10 14 14 C 1.37882 * 119.99459 * 279.36367 * 12 11 10 15 15 N 1.31503 * 120.00417 * 6.41243 * 14 12 11 16 16 Si 1.86797 * 119.99393 * 186.41457 * 14 12 11 17 17 H 1.48502 * 109.47497 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47581 * 119.99764 * 16 14 12 19 19 H 1.48500 * 109.47311 * 239.99865 * 16 14 12 20 20 C 1.52992 * 117.50039 * 105.90784 * 11 10 7 21 21 C 1.53001 * 117.49972 * 174.53396 * 11 10 7 22 22 C 1.46928 * 118.73292 * 53.86719 * 6 5 4 23 23 C 1.53036 * 109.45666 * 240.06692 * 3 2 1 24 24 H 1.07994 * 119.99994 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99767 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.99759 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46140 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.49675 * 61.43421 * 4 3 2 29 29 H 1.09001 * 109.52555 * 301.35171 * 4 3 2 30 30 H 1.09004 * 109.58495 * 185.57752 * 5 4 3 31 31 H 1.08998 * 109.70678 * 65.22485 * 5 4 3 32 32 H 1.09004 * 109.46989 * 67.90431 * 10 7 6 33 33 H 1.08992 * 109.47806 * 307.90266 * 10 7 6 34 34 H 0.97008 * 120.00427 * 174.97410 * 15 14 12 35 35 H 1.09002 * 117.50262 * 214.98327 * 20 11 10 36 36 H 1.09002 * 117.50282 * 0.02562 * 20 11 10 37 37 H 1.08994 * 117.49963 * 359.97438 * 21 11 10 38 38 H 1.08998 * 117.49539 * 145.02039 * 21 11 10 39 39 H 1.08997 * 109.59100 * 65.92441 * 22 6 5 40 40 H 1.09000 * 109.58530 * 186.34934 * 22 6 5 41 41 H 1.08997 * 109.50116 * 298.56482 * 23 3 2 42 42 H 1.09001 * 109.49968 * 58.63433 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9433 1.3859 1.2497 5 6 3.6811 2.7284 1.2638 6 7 4.4140 2.8786 -0.0008 7 16 6.0363 3.2106 -0.0016 8 8 6.2589 3.8738 1.2354 9 8 6.2576 3.8739 -1.2386 10 6 6.8320 1.5805 -0.0020 11 6 8.3398 1.7488 0.1956 12 6 8.9657 2.9094 -0.5341 13 1 9.1696 3.8308 -0.0090 14 6 9.2777 2.7948 -1.8723 15 7 8.9161 1.7227 -2.5424 16 14 10.2143 4.1627 -2.7332 17 1 10.5013 5.2516 -1.7651 18 1 11.4914 3.6270 -3.2692 19 1 9.3944 4.6973 -3.8499 20 6 8.9188 1.3788 1.5625 21 6 9.1779 0.4785 0.3529 22 6 3.6787 2.7346 -1.2647 23 6 2.9420 1.3866 -1.2505 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3550 2.1335 0.0005 28 1 3.6685 0.5723 1.2373 29 1 2.3198 1.3041 2.1400 30 1 4.3828 2.7509 2.0977 31 1 2.9628 3.5415 1.3687 32 1 6.6434 1.0844 -0.9541 33 1 6.4245 0.9770 0.8090 34 1 9.0707 1.6733 -3.4988 35 1 9.7524 1.9748 1.9341 36 1 8.2257 1.0150 2.3210 37 1 8.6550 -0.4772 0.3160 38 1 10.1819 0.4822 -0.0714 39 1 2.9585 3.5468 -1.3630 40 1 4.3788 2.7613 -2.0997 41 1 3.6672 0.5730 -1.2393 42 1 2.3172 1.3050 -2.1400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331960607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:20 Heat of formation + Delta-G solvation = -37.817702 kcal Electronic energy + Delta-G solvation = -23649.363122 eV Core-core repulsion = 20336.408030 eV Total energy + Delta-G solvation = -3312.955091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.71783 -36.70968 -36.12533 -34.93027 -34.55399 -32.05666 -30.96733 -30.54338 -28.12175 -25.48740 -24.39084 -23.22672 -21.20552 -20.59863 -19.92038 -19.34187 -18.25583 -17.04653 -16.40022 -15.52671 -15.13832 -14.97485 -14.61660 -14.44033 -14.13257 -14.05735 -13.79324 -13.66137 -13.07367 -12.75087 -12.34549 -12.22808 -12.13944 -11.78892 -11.24858 -11.15570 -11.08803 -11.03241 -10.95893 -10.89096 -10.86673 -10.73153 -10.50356 -10.34523 -10.25156 -10.07976 -9.65265 -9.41374 -8.94955 -8.67092 -8.55049 -8.07425 -6.15556 -4.30113 1.21392 2.14702 3.31953 3.41163 3.45810 3.52539 4.40952 4.56601 4.69539 4.83436 4.87106 5.05843 5.09915 5.14359 5.18512 5.24801 5.33442 5.40905 5.44136 5.61974 5.71261 5.72965 5.83778 5.91481 5.93052 5.94636 6.07006 6.11673 6.28402 6.33479 6.35351 6.44643 6.50375 6.64246 6.68006 6.70357 6.93878 7.00781 7.19652 7.37895 7.80222 8.20683 8.79838 9.47407 10.92319 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.005104 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.019302 B = 5485.079319 C = 5714.034019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.060 4.060 4 C -0.127 4.127 5 C 0.121 3.879 6 N -1.015 6.015 7 S 2.624 3.376 8 O -0.973 6.973 9 O -0.941 6.941 10 C -0.558 4.558 11 C 0.053 3.947 12 C -0.545 4.545 13 H 0.070 0.930 14 C 0.098 3.902 15 N -0.866 5.866 16 Si 0.892 3.108 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.277 1.277 20 C -0.203 4.203 21 C -0.149 4.149 22 C 0.122 3.878 23 C -0.128 4.128 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 -4.046 4.179 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.159 4.159 3 C -0.078 4.078 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.851 5.851 7 S 2.722 3.278 8 O -0.964 6.964 9 O -0.932 6.932 10 C -0.690 4.690 11 C 0.051 3.949 12 C -0.583 4.583 13 H 0.088 0.912 14 C -0.109 4.109 15 N -0.500 5.500 16 Si 0.718 3.282 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.202 1.202 20 C -0.240 4.240 21 C -0.188 4.188 22 C -0.004 4.004 23 C -0.167 4.167 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.050 -3.259 4.000 14.968 hybrid contribution 0.315 -0.341 -0.589 0.750 sum -13.735 -3.600 3.411 14.603 Atomic orbital electron populations 1.23810 0.95928 1.01586 1.02344 1.23019 0.95846 0.98434 0.98611 1.20321 0.96688 0.95282 0.95531 1.21960 0.98878 0.98346 0.97463 1.21305 0.96562 0.96640 0.85929 1.58331 1.27371 1.88627 1.10753 1.04707 0.71125 0.77883 0.74097 1.93458 1.84204 1.72356 1.46388 1.93514 1.83071 1.71547 1.45024 1.30001 1.09048 1.21264 1.08699 1.18183 0.86051 0.96522 0.94177 1.20669 1.44263 0.98243 0.95082 0.91194 1.24895 0.93714 0.95145 0.97150 1.69941 1.44659 1.27358 1.08051 0.86521 0.79313 0.82275 0.80042 1.19207 1.20832 1.20224 1.23090 1.03797 1.05589 0.91565 1.22568 1.01609 0.93809 1.00841 1.21417 0.96561 0.96433 0.85957 1.22032 0.98865 0.98470 0.97289 0.88759 0.88731 0.87440 0.90741 0.91233 0.90977 0.89213 0.91646 0.85436 0.88885 0.92572 0.89718 0.91280 0.91665 0.89759 0.91688 0.88673 0.91066 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 14.32 29.01 0.42 -1.27 16 2 C -0.14 -1.32 8.77 -36.03 -0.32 -1.64 16 3 C -0.06 -0.62 2.44 -91.73 -0.22 -0.84 16 4 C -0.13 -1.38 5.34 -26.61 -0.14 -1.52 16 5 C 0.12 1.62 6.31 -3.71 -0.02 1.59 16 6 N -1.02 -16.44 3.21 -113.27 -0.36 -16.80 16 7 S 2.62 56.56 4.54 -107.50 -0.49 56.07 16 8 O -0.97 -22.90 16.73 -57.54 -0.96 -23.86 16 9 O -0.94 -23.57 15.97 -57.54 -0.92 -24.49 16 10 C -0.56 -11.89 6.29 37.16 0.23 -11.65 16 11 C 0.05 1.30 1.57 -155.66 -0.24 1.05 16 12 C -0.55 -15.07 6.95 -34.43 -0.24 -15.31 16 13 H 0.07 1.99 7.82 -52.49 -0.41 1.58 16 14 C 0.10 2.72 5.42 -17.82 -0.10 2.63 16 15 N -0.87 -24.00 13.12 55.43 0.73 -23.27 16 16 Si 0.89 21.98 29.55 -169.99 -5.02 16.96 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.20 -4.43 9.88 -26.73 -0.26 -4.70 16 21 C -0.15 -3.41 9.72 -26.73 -0.26 -3.67 16 22 C 0.12 1.73 6.34 -3.48 -0.02 1.70 16 23 C -0.13 -1.47 5.36 -26.39 -0.14 -1.61 16 24 H 0.09 0.69 8.06 -52.49 -0.42 0.27 16 25 H 0.09 0.75 7.83 -52.48 -0.41 0.34 16 26 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.07 0.73 7.78 -51.93 -0.40 0.33 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.24 7.10 -51.93 -0.37 0.87 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.13 2.77 8.14 -51.92 -0.42 2.35 16 33 H 0.09 1.66 7.95 -51.93 -0.41 1.25 16 34 H 0.26 6.97 8.32 -40.82 -0.34 6.64 16 35 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 36 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.49 7.09 -51.93 -0.37 1.12 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -31.95 352.66 -10.04 -41.99 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.00 Total: 3.33 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: -1.32 Total: -35.24 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.36 Total: -40.07 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -1.88 Total: -48.35 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 56.56 SS G_CDS: -0.49 Total: 56.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.95 -10.04 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331960607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.176 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds