Wall clock time and date at job start Fri Apr 10 2020 20:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00276 * 2 1 4 4 H 1.48497 * 109.47173 * 274.98992 * 3 2 1 5 5 H 1.48500 * 109.47474 * 34.99444 * 3 2 1 6 6 H 1.48507 * 109.47316 * 154.99240 * 3 2 1 7 7 C 1.37878 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00273 * 175.36029 * 7 2 1 9 9 C 1.50697 * 120.00252 * 355.35756 * 7 2 1 10 10 H 1.09000 * 109.52860 * 305.30632 * 9 7 2 11 11 C 1.53045 * 109.50207 * 185.21571 * 9 7 2 12 12 C 1.53068 * 109.66085 * 178.75136 * 11 9 7 13 13 C 1.53188 * 109.29796 * 61.15309 * 12 11 9 14 14 N 1.46931 * 108.89388 * 305.57942 * 13 12 11 15 15 C 1.34771 * 120.63110 * 233.55310 * 14 13 12 16 16 O 1.21671 * 119.99879 * 175.11098 * 15 14 13 17 17 C 1.46934 * 120.00034 * 355.12002 * 15 14 13 18 18 C 1.36355 * 126.82683 * 325.96122 * 17 15 14 19 19 N 1.35577 * 109.74819 * 179.83197 * 18 17 15 20 20 H 0.96992 * 124.71946 * 180.18538 * 19 18 17 21 21 C 1.37692 * 110.56063 * 0.45232 * 19 18 17 22 22 N 1.32669 * 132.95164 * 179.70800 * 21 19 18 23 23 C 1.31616 * 121.69304 * 180.02562 * 22 21 19 24 24 C 1.38581 * 121.54229 * 0.02562 * 23 22 21 25 25 C 1.38342 * 119.32676 * 359.95848 * 24 23 22 26 26 C 1.39353 * 118.05298 * 0.03801 * 25 24 23 27 27 C 1.46928 * 118.73614 * 53.53789 * 14 13 12 28 28 H 0.96999 * 119.99859 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.45876 * 298.70774 * 11 9 7 30 30 H 1.09001 * 109.45617 * 58.67900 * 11 9 7 31 31 H 1.09005 * 109.38881 * 301.27872 * 12 11 9 32 32 H 1.09000 * 109.62656 * 181.17448 * 12 11 9 33 33 H 1.08997 * 109.59417 * 185.72253 * 13 12 11 34 34 H 1.09001 * 109.58290 * 65.43847 * 13 12 11 35 35 H 1.07998 * 125.12534 * 359.97438 * 18 17 15 36 36 H 1.08001 * 119.22398 * 180.02562 * 23 22 21 37 37 H 1.07996 * 120.33885 * 179.97438 * 24 23 22 38 38 H 1.07994 * 120.97102 * 179.97438 * 25 24 23 39 39 H 1.08998 * 109.59056 * 66.17634 * 27 14 13 40 40 H 1.09003 * 109.58282 * 186.60741 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3912 2.1072 -1.3947 5 1 1.5035 2.6199 0.8029 6 1 3.5956 1.4119 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0818 -1.1958 -0.0751 9 6 1.2547 -2.4970 0.1067 10 1 0.6188 -2.4803 0.9919 11 6 2.2518 -3.6529 0.2156 12 6 1.4939 -4.9754 0.3550 13 6 0.6274 -5.1959 -0.8889 14 7 -0.2338 -4.0213 -1.0831 15 6 -1.5686 -4.1611 -1.2050 16 8 -2.2795 -3.1763 -1.2761 17 6 -2.1655 -5.5030 -1.2518 18 6 -1.6193 -6.6215 -1.8084 19 7 -2.4646 -7.6701 -1.6529 20 1 -2.2901 -8.5714 -1.9659 21 6 -3.6077 -7.2762 -0.9941 22 7 -4.7045 -7.9228 -0.6212 23 6 -5.6847 -7.3138 0.0117 24 6 -5.6204 -5.9644 0.3205 25 6 -4.5003 -5.2386 -0.0434 26 6 -3.4760 -5.9058 -0.7126 27 6 0.3881 -2.6914 -1.1416 28 1 -0.4850 0.8400 -0.0004 29 1 2.8707 -3.6842 -0.6810 30 1 2.8859 -3.5043 1.0897 31 1 0.8577 -4.9365 1.2393 32 1 2.2045 -5.7960 0.4535 33 1 0.0094 -6.0831 -0.7513 34 1 1.2674 -5.3280 -1.7612 35 1 -0.6573 -6.6660 -2.2972 36 1 -6.5596 -7.8791 0.2972 37 1 -6.4363 -5.4842 0.8401 38 1 -4.4224 -4.1857 0.1835 39 1 1.0104 -2.6178 -2.0334 40 1 -0.3877 -1.9263 -1.1706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:40 Heat of formation + Delta-G solvation = 38.869653 kcal Electronic energy + Delta-G solvation = -24073.601826 eV Core-core repulsion = 20660.820948 eV Total energy + Delta-G solvation = -3412.780878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72791 -39.19453 -37.82038 -36.54863 -33.43676 -32.85461 -31.76864 -30.37060 -29.97901 -29.04991 -25.12151 -24.98819 -23.81036 -22.60440 -21.97745 -21.76789 -19.48121 -18.70510 -17.84010 -16.91820 -16.38462 -16.03825 -15.80639 -15.27454 -14.86646 -14.61917 -14.49152 -14.13557 -13.77356 -13.32537 -13.17009 -12.87036 -12.67446 -12.57100 -12.40609 -12.14157 -11.93353 -11.81680 -11.01237 -10.87501 -10.53100 -10.44134 -10.29244 -10.24213 -9.85364 -9.61200 -9.25336 -9.07903 -8.86654 -8.57859 -8.45481 -8.09010 -7.68586 -5.98540 -4.06963 0.89370 1.29477 2.17152 2.59446 3.31250 3.39241 3.41700 3.53909 3.78866 3.98723 4.40464 4.44490 4.60427 4.73032 4.94974 5.15752 5.20542 5.29237 5.31838 5.44024 5.48162 5.52645 5.68176 5.83037 5.96471 6.17204 6.21967 6.31458 6.33199 6.38152 6.62275 6.68408 6.81635 6.86364 6.98470 7.08242 7.18106 7.31008 7.66235 7.88141 7.90354 8.01313 8.28309 8.40370 8.92791 8.99169 9.58751 11.07241 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.004005 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.531165 B = 6990.453704 C = 7786.247928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.031 0.969 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.097 3.903 14 N -0.601 5.601 15 C 0.576 3.424 16 O -0.533 6.533 17 C -0.195 4.195 18 C 0.098 3.902 19 N -0.570 5.570 20 H 0.421 0.579 21 C 0.277 3.723 22 N -0.501 5.501 23 C 0.133 3.867 24 C -0.201 4.201 25 C -0.015 4.015 26 C -0.112 4.112 27 C 0.116 3.884 28 H 0.263 0.737 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.190 0.810 36 H 0.160 0.840 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.043 0.957 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -16.909 -2.050 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.026 4.026 14 N -0.333 5.333 15 C 0.363 3.637 16 O -0.410 6.410 17 C -0.206 4.206 18 C -0.033 4.033 19 N -0.176 5.176 20 H 0.259 0.741 21 C 0.045 3.955 22 N -0.214 5.214 23 C -0.032 4.032 24 C -0.222 4.222 25 C -0.042 4.042 26 C -0.119 4.119 27 C -0.004 4.004 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.206 0.794 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.061 0.939 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.792 -17.227 -2.353 18.327 hybrid contribution 0.731 1.276 0.029 1.470 sum -5.062 -15.952 -2.324 16.896 Atomic orbital electron populations 1.69924 1.05745 1.26814 1.49040 1.25052 0.94847 0.99221 0.94828 0.86603 0.79911 0.83664 0.77968 1.20748 1.21169 1.19901 1.21066 0.93110 0.90177 1.51738 0.92413 1.18977 0.92641 0.92105 0.94200 0.95061 1.21634 0.98587 0.94116 1.00455 1.21945 0.98621 0.99034 0.97596 1.21962 0.93546 0.88887 0.98236 1.48376 1.05134 1.09455 1.70382 1.17235 0.82169 0.86866 0.77444 1.90808 1.60480 1.39356 1.50401 1.20312 0.95814 0.94534 1.09966 1.22310 0.95254 0.85361 1.00334 1.41260 1.14279 1.11823 1.50214 0.74071 1.18330 0.89005 0.90012 0.98174 1.66466 1.00062 1.39926 1.14927 1.22408 0.95119 0.92302 0.93381 1.21928 0.99707 0.95622 1.04931 1.21167 0.90540 1.00722 0.91733 1.19478 0.95496 0.93556 1.03342 1.22302 0.98458 0.80852 0.98815 0.92682 0.93274 0.93027 0.92156 0.92288 0.90467 0.92064 0.79358 0.82258 0.84365 0.83914 0.93878 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 11.62 55.43 0.64 -24.97 16 2 C 0.06 1.76 5.36 -17.82 -0.10 1.66 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.05 8.49 -34.44 -0.29 -14.34 16 8 H 0.06 1.52 7.75 -52.48 -0.41 1.11 16 9 C 0.04 0.98 2.20 -91.65 -0.20 0.78 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 11 C -0.11 -2.15 5.10 -26.67 -0.14 -2.29 16 12 C -0.13 -2.12 6.09 -26.60 -0.16 -2.28 16 13 C 0.10 1.44 5.29 -3.71 -0.02 1.42 16 14 N -0.60 -11.86 2.97 -174.21 -0.52 -12.37 16 15 C 0.58 11.83 7.62 -12.74 -0.10 11.73 16 16 O -0.53 -13.30 16.50 5.21 0.09 -13.22 16 17 C -0.20 -3.18 5.59 -103.36 -0.58 -3.76 16 18 C 0.10 1.13 9.42 -16.58 -0.16 0.98 16 19 N -0.57 -6.08 5.97 -11.97 -0.07 -6.16 16 20 H 0.42 2.98 8.96 -40.82 -0.37 2.62 16 21 C 0.28 3.86 8.41 -155.53 -1.31 2.55 16 22 N -0.50 -6.67 10.39 -12.29 -0.13 -6.80 16 23 C 0.13 1.49 11.15 -17.52 -0.20 1.30 16 24 C -0.20 -2.34 10.10 -39.42 -0.40 -2.74 16 25 C -0.02 -0.23 10.21 -39.13 -0.40 -0.63 16 26 C -0.11 -1.79 6.35 -104.93 -0.67 -2.46 16 27 C 0.12 2.76 5.48 -3.70 -0.02 2.74 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.94 4.37 -51.93 -0.23 0.72 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.19 1.54 6.67 -52.49 -0.35 1.19 16 36 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.12 3.34 5.35 -51.93 -0.28 3.06 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -34.07 327.76 -9.79 -43.86 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.99 Total: 3.90 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -4.73 Total: -5.33 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.07 Total: -50.29 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.07 -9.79 -43.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.729 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds