Wall clock time and date at job start Fri Apr 10 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00276 * 2 1 4 4 H 1.48497 * 109.47173 * 274.98992 * 3 2 1 5 5 H 1.48500 * 109.47474 * 34.99444 * 3 2 1 6 6 H 1.48507 * 109.47316 * 154.99240 * 3 2 1 7 7 C 1.37878 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00273 * 175.36029 * 7 2 1 9 9 C 1.50697 * 120.00252 * 355.35756 * 7 2 1 10 10 H 1.09000 * 109.52860 * 305.30632 * 9 7 2 11 11 C 1.53045 * 109.50207 * 185.21571 * 9 7 2 12 12 C 1.53068 * 109.66085 * 178.75136 * 11 9 7 13 13 C 1.53188 * 109.29796 * 61.15309 * 12 11 9 14 14 N 1.46931 * 108.89388 * 305.57942 * 13 12 11 15 15 C 1.34771 * 120.63110 * 233.55310 * 14 13 12 16 16 O 1.21671 * 119.99879 * 175.11098 * 15 14 13 17 17 C 1.46934 * 120.00034 * 355.12002 * 15 14 13 18 18 C 1.36355 * 126.82683 * 325.96122 * 17 15 14 19 19 N 1.35577 * 109.74819 * 179.83197 * 18 17 15 20 20 H 0.96992 * 124.71946 * 180.18538 * 19 18 17 21 21 C 1.37692 * 110.56063 * 0.45232 * 19 18 17 22 22 N 1.32669 * 132.95164 * 179.70800 * 21 19 18 23 23 C 1.31616 * 121.69304 * 180.02562 * 22 21 19 24 24 C 1.38581 * 121.54229 * 0.02562 * 23 22 21 25 25 C 1.38342 * 119.32676 * 359.95848 * 24 23 22 26 26 C 1.39353 * 118.05298 * 0.03801 * 25 24 23 27 27 C 1.46928 * 118.73614 * 53.53789 * 14 13 12 28 28 H 0.96999 * 119.99859 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.45876 * 298.70774 * 11 9 7 30 30 H 1.09001 * 109.45617 * 58.67900 * 11 9 7 31 31 H 1.09005 * 109.38881 * 301.27872 * 12 11 9 32 32 H 1.09000 * 109.62656 * 181.17448 * 12 11 9 33 33 H 1.08997 * 109.59417 * 185.72253 * 13 12 11 34 34 H 1.09001 * 109.58290 * 65.43847 * 13 12 11 35 35 H 1.07998 * 125.12534 * 359.97438 * 18 17 15 36 36 H 1.08001 * 119.22398 * 180.02562 * 23 22 21 37 37 H 1.07996 * 120.33885 * 179.97438 * 24 23 22 38 38 H 1.07994 * 120.97102 * 179.97438 * 25 24 23 39 39 H 1.08998 * 109.59056 * 66.17634 * 27 14 13 40 40 H 1.09003 * 109.58282 * 186.60741 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3912 2.1072 -1.3947 5 1 1.5035 2.6199 0.8029 6 1 3.5956 1.4119 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0818 -1.1958 -0.0751 9 6 1.2547 -2.4970 0.1067 10 1 0.6188 -2.4803 0.9919 11 6 2.2518 -3.6529 0.2156 12 6 1.4939 -4.9754 0.3550 13 6 0.6274 -5.1959 -0.8889 14 7 -0.2338 -4.0213 -1.0831 15 6 -1.5686 -4.1611 -1.2050 16 8 -2.2795 -3.1763 -1.2761 17 6 -2.1655 -5.5030 -1.2518 18 6 -1.6193 -6.6215 -1.8084 19 7 -2.4646 -7.6701 -1.6529 20 1 -2.2901 -8.5714 -1.9659 21 6 -3.6077 -7.2762 -0.9941 22 7 -4.7045 -7.9228 -0.6212 23 6 -5.6847 -7.3138 0.0117 24 6 -5.6204 -5.9644 0.3205 25 6 -4.5003 -5.2386 -0.0434 26 6 -3.4760 -5.9058 -0.7126 27 6 0.3881 -2.6914 -1.1416 28 1 -0.4850 0.8400 -0.0004 29 1 2.8707 -3.6842 -0.6810 30 1 2.8859 -3.5043 1.0897 31 1 0.8577 -4.9365 1.2393 32 1 2.2045 -5.7960 0.4535 33 1 0.0094 -6.0831 -0.7513 34 1 1.2674 -5.3280 -1.7612 35 1 -0.6573 -6.6660 -2.2972 36 1 -6.5596 -7.8791 0.2972 37 1 -6.4363 -5.4842 0.8401 38 1 -4.4224 -4.1857 0.1835 39 1 1.0104 -2.6178 -2.0334 40 1 -0.3877 -1.9263 -1.1706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:39 Heat of formation + Delta-G solvation = 15.944833 kcal Electronic energy + Delta-G solvation = -24074.595921 eV Core-core repulsion = 20660.820948 eV Total energy + Delta-G solvation = -3413.774973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.76578 -40.69318 -38.84454 -38.19840 -35.29804 -33.97233 -33.42352 -31.80160 -31.18484 -30.28529 -27.04737 -26.48069 -24.85739 -23.71638 -23.33289 -23.24449 -21.06287 -19.92729 -19.14483 -18.34799 -18.00404 -17.17600 -17.09445 -16.58176 -16.50649 -16.06388 -15.64309 -15.62194 -15.19452 -14.76985 -14.53405 -14.29308 -14.21170 -13.91623 -13.72263 -13.43555 -13.36622 -13.00158 -12.89528 -12.62383 -12.30857 -12.20834 -11.78322 -11.59197 -11.45232 -11.11362 -10.92651 -10.79978 -10.54808 -10.40050 -9.56474 -9.42163 -9.07569 -8.10197 -6.27141 -0.14445 0.29248 1.01158 1.40768 1.41509 1.52973 1.67518 2.08739 2.40225 2.45712 2.88327 3.18678 3.49468 3.56597 3.72671 4.01119 4.07954 4.15132 4.17441 4.20944 4.34844 4.46947 4.55602 4.61159 4.78038 4.82481 4.84253 4.90058 5.11833 5.16698 5.27197 5.29851 5.31379 5.35462 5.42403 5.57453 5.68651 5.81492 5.92133 6.01535 6.28069 6.34882 6.72625 6.87460 6.94771 7.39364 7.44050 8.93952 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.004005 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.531165 B = 6990.453704 C = 7786.247928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.038 3.962 10 H -0.019 1.019 11 C -0.104 4.104 12 C -0.128 4.128 13 C 0.092 3.908 14 N -0.604 5.604 15 C 0.570 3.430 16 O -0.599 6.599 17 C -0.250 4.250 18 C 0.150 3.850 19 N -0.546 5.546 20 H 0.444 0.556 21 C 0.266 3.734 22 N -0.504 5.504 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.055 4.055 26 C -0.141 4.141 27 C 0.129 3.871 28 H 0.259 0.741 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.235 0.765 36 H 0.204 0.796 37 H 0.168 0.832 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 -20.786 -2.794 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.018 3.982 10 H -0.001 1.001 11 C -0.142 4.142 12 C -0.166 4.166 13 C -0.029 4.029 14 N -0.335 5.335 15 C 0.361 3.639 16 O -0.482 6.482 17 C -0.261 4.261 18 C 0.017 3.983 19 N -0.153 5.153 20 H 0.286 0.714 21 C 0.034 3.966 22 N -0.217 5.217 23 C -0.030 4.030 24 C -0.205 4.205 25 C -0.081 4.081 26 C -0.148 4.148 27 C 0.007 3.993 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.251 0.749 36 H 0.221 0.779 37 H 0.185 0.815 38 H 0.131 0.869 39 H 0.063 0.937 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.511 -21.194 -3.094 21.889 hybrid contribution 0.275 2.418 0.298 2.452 sum -4.236 -18.776 -2.796 19.450 Atomic orbital electron populations 1.70142 1.07582 1.27204 1.50588 1.25926 0.95489 1.03043 0.94635 0.85548 0.78904 0.79154 0.78092 1.20100 1.21452 1.18482 1.21529 0.93556 0.91508 1.50762 0.91786 1.18915 0.93115 0.93858 0.92282 1.00054 1.21517 0.97587 0.94082 1.01012 1.21929 0.99021 0.98333 0.97309 1.22389 0.93607 0.87722 0.99229 1.48358 1.05657 1.09408 1.70040 1.17889 0.81978 0.88086 0.75954 1.90756 1.61958 1.42028 1.53426 1.19897 0.97392 0.93738 1.15080 1.22781 0.95612 0.83555 0.96395 1.41242 1.12830 1.12655 1.48574 0.71380 1.18455 0.90121 0.89159 0.98857 1.66617 1.00115 1.39897 1.15057 1.23150 0.95741 0.92172 0.91914 1.22269 0.98896 0.95951 1.03371 1.21200 0.92693 1.00002 0.94246 1.19770 0.95752 0.95100 1.04142 1.21691 0.96807 0.82399 0.98415 0.93244 0.91808 0.93268 0.94186 0.87371 0.87239 0.88438 0.74905 0.77915 0.81490 0.86933 0.93650 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.16 11.62 21.45 0.25 -56.91 16 2 C 0.01 0.48 5.36 84.66 0.45 0.94 16 3 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -29.71 8.49 25.60 0.22 -29.49 16 8 H 0.06 3.39 7.75 -2.91 -0.02 3.36 16 9 C 0.04 1.92 2.20 -11.46 -0.03 1.90 16 10 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 11 C -0.10 -3.97 5.10 30.63 0.16 -3.81 16 12 C -0.13 -3.71 6.09 30.68 0.19 -3.52 16 13 C 0.09 2.43 5.29 86.36 0.46 2.89 16 14 N -0.60 -24.29 2.97 -823.30 -2.45 -26.74 16 15 C 0.57 24.76 7.62 86.52 0.66 25.42 16 16 O -0.60 -33.01 16.50 -4.26 -0.07 -33.08 16 17 C -0.25 -8.14 5.59 -19.05 -0.11 -8.25 16 18 C 0.15 2.94 9.42 83.68 0.79 3.73 16 19 N -0.55 -9.57 5.97 -191.79 -1.15 -10.71 16 20 H 0.44 4.05 8.96 -92.71 -0.83 3.22 16 21 C 0.27 6.88 8.41 133.77 1.13 8.00 16 22 N -0.50 -12.06 10.39 -192.79 -2.00 -14.06 16 23 C 0.14 2.67 11.15 84.81 0.95 3.61 16 24 C -0.18 -4.15 10.10 22.38 0.23 -3.93 16 25 C -0.05 -1.75 10.21 22.56 0.23 -1.52 16 26 C -0.14 -4.58 6.35 -20.06 -0.13 -4.71 16 27 C 0.13 6.49 5.48 86.36 0.47 6.96 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.11 2.19 4.37 -2.39 -0.01 2.18 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.23 2.39 6.67 -2.91 -0.02 2.37 16 36 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 38 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.07 4.11 5.35 -2.39 -0.01 4.09 16 Total: -1.00 -85.11 327.76 2.52 -82.60 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.25 Total: 13.93 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.66 Total: -1.79 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -5.35 Total: -108.43 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.07 Total: -33.08 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -85.11 2.52 -82.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.540 kcal (2) G-P(sol) polarization free energy of solvation -85.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds