Wall clock time and date at job start Fri Apr 10 2020 20:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99686 * 2 1 4 4 O 1.20824 * 120.00043 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99644 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47194 * 60.00257 * 5 3 2 7 7 N 1.46898 * 109.46884 * 179.97438 * 5 3 2 8 8 C 1.46905 * 111.00258 * 275.00157 * 7 5 3 9 9 C 1.50698 * 109.46990 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00609 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99453 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00474 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99651 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47465 * 89.99916 * 13 11 9 15 15 H 1.48503 * 109.46587 * 210.00113 * 13 11 9 16 16 H 1.48502 * 109.47002 * 329.99621 * 13 11 9 17 17 C 1.50698 * 109.47259 * 300.00035 * 5 3 2 18 18 C 1.36122 * 120.17200 * 265.33759 * 17 5 3 19 19 C 1.39333 * 120.98705 * 180.24153 * 18 17 5 20 20 C 1.36130 * 120.98770 * 359.43812 * 19 18 17 21 21 C 1.40500 * 119.65433 * 0.26590 * 20 19 18 22 22 C 1.40549 * 121.29304 * 179.97438 * 21 20 19 23 23 C 1.36088 * 119.65533 * 179.97438 * 22 21 20 24 24 C 1.39379 * 120.99109 * 0.04080 * 23 22 21 25 25 C 1.36089 * 120.99662 * 359.95651 * 24 23 22 26 26 C 1.40503 * 120.17334 * 84.99789 * 17 5 3 27 27 H 1.08997 * 109.47059 * 299.99737 * 1 2 3 28 28 H 1.08999 * 109.47417 * 59.99967 * 1 2 3 29 29 H 1.08999 * 109.46784 * 179.97438 * 1 2 3 30 30 H 1.00905 * 110.99840 * 38.95170 * 7 5 3 31 31 H 1.09006 * 109.46682 * 300.00223 * 8 7 5 32 32 H 1.08996 * 109.46895 * 59.99669 * 8 7 5 33 33 H 0.96998 * 120.00341 * 179.97438 * 12 11 9 34 34 H 1.08000 * 119.50893 * 359.96012 * 18 17 5 35 35 H 1.08002 * 119.50939 * 179.72609 * 19 18 17 36 36 H 1.07998 * 120.17215 * 180.27939 * 20 19 18 37 37 H 1.08006 * 120.16948 * 359.97438 * 22 21 20 38 38 H 1.07993 * 119.50253 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.50012 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.17649 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9558 0.7810 -0.8908 7 7 3.9828 2.6836 -0.0011 8 6 4.0169 3.2221 -1.3675 9 6 4.4468 4.6660 -1.3278 10 1 4.6725 5.1365 -0.3822 11 6 4.5529 5.3860 -2.4988 12 7 4.2785 4.8130 -3.6503 13 14 5.0864 7.1756 -2.4497 14 1 6.5653 7.2544 -2.5586 15 1 4.4668 7.9080 -3.5833 16 1 4.6511 7.7869 -1.1683 17 6 4.1057 0.5915 1.2295 18 6 4.3869 1.3162 2.3470 19 6 4.8908 0.7026 3.4919 20 6 5.1059 -0.6411 3.5300 21 6 4.8218 -1.4230 2.3978 22 6 5.0314 -2.8127 2.3990 23 6 4.7443 -3.5380 1.2839 24 6 4.2451 -2.9233 0.1368 25 6 4.0295 -1.5802 0.0988 26 6 4.3143 -0.7979 1.2313 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.3830 3.2382 0.5912 31 1 4.7241 2.6483 -1.9665 32 1 3.0237 3.1511 -1.8108 33 1 4.3528 5.3197 -4.4741 34 1 4.2211 2.3834 2.3446 35 1 5.1097 1.3012 4.3638 36 1 5.4927 -1.1037 4.4260 37 1 5.4183 -3.3025 3.2805 38 1 4.9066 -4.6056 1.2874 39 1 4.0259 -3.5221 -0.7349 40 1 3.6419 -1.1177 -0.7969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932223607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:11 Heat of formation + Delta-G solvation = -36.440805 kcal Electronic energy + Delta-G solvation = -23947.929363 eV Core-core repulsion = 20499.590027 eV Total energy + Delta-G solvation = -3448.339336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78453 -39.83467 -36.97481 -36.21487 -35.11695 -33.20494 -31.92192 -30.21087 -29.51542 -28.15790 -26.93908 -24.97691 -23.22904 -22.89834 -21.83112 -21.49957 -19.91581 -17.59829 -17.30258 -17.13614 -16.85141 -16.17075 -16.02038 -15.84804 -14.76826 -14.38933 -14.25512 -13.94974 -13.62585 -13.49221 -13.35270 -12.97463 -12.90248 -12.71280 -12.21053 -12.12903 -11.83690 -11.70362 -11.39709 -11.21071 -10.89340 -10.83172 -10.68485 -10.60639 -10.57884 -10.40204 -10.00736 -9.61512 -9.26174 -8.53866 -8.47256 -7.72230 -7.67996 -6.04954 -4.06698 0.62523 1.15525 2.12482 2.49583 2.94580 3.20102 3.32969 3.38380 3.42591 4.22267 4.41098 4.59869 4.82261 4.92006 4.97654 5.06507 5.12758 5.19918 5.21697 5.28391 5.31320 5.33713 5.48266 5.50018 5.53109 5.62495 5.67630 5.89090 6.08045 6.22182 6.32083 6.38957 6.55083 6.57664 6.64163 6.81600 6.93966 7.03855 7.13045 7.35099 7.66366 7.97782 8.05238 8.13470 8.44267 8.99623 9.57441 11.06538 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.016415 B = 0.004299 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.377300 B = 6511.562482 C = 7078.704869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.435 3.565 4 O -0.495 6.495 5 C 0.134 3.866 6 H 0.120 0.880 7 N -0.651 5.651 8 C 0.189 3.811 9 C -0.513 4.513 10 H 0.064 0.936 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.901 3.099 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.056 4.056 18 C -0.087 4.087 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.053 4.053 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.089 4.089 26 C -0.035 4.035 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.344 0.656 31 H 0.031 0.969 32 H -0.003 1.003 33 H 0.262 0.738 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 -16.710 11.729 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.275 3.725 4 O -0.381 6.381 5 C 0.020 3.980 6 H 0.138 0.862 7 N -0.282 5.282 8 C 0.063 3.937 9 C -0.551 4.551 10 H 0.082 0.918 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.729 3.271 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.057 4.057 18 C -0.105 4.105 19 C -0.130 4.130 20 C -0.131 4.131 21 C -0.053 4.053 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.107 4.107 26 C -0.036 4.036 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.165 0.835 31 H 0.049 0.951 32 H 0.015 0.985 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.717 -16.482 11.526 20.186 hybrid contribution -0.913 1.132 -0.410 1.511 sum -2.630 -15.350 11.117 19.135 Atomic orbital electron populations 1.23190 0.77528 1.03069 1.02309 1.86599 1.22608 1.33952 1.84109 1.25426 0.93459 0.81515 0.72084 1.90688 1.66541 1.36302 1.44582 1.20406 0.84182 0.95256 0.98110 0.86243 1.61199 1.52822 0.97902 1.16308 1.19740 0.96037 0.95591 0.82325 1.21059 1.45553 0.95148 0.93353 0.91797 1.24960 0.95424 0.98737 0.95301 1.69953 1.49065 1.36895 0.97722 0.86445 0.78680 0.84345 0.77623 1.20574 1.21292 1.19792 1.19302 0.99917 0.91901 0.94556 1.20805 0.97015 1.00875 0.91781 1.20868 0.99176 0.94804 0.98174 1.20976 1.00728 0.94098 0.97297 1.18003 0.99975 0.93673 0.93660 1.20936 1.00696 0.92674 0.98581 1.20789 0.99767 0.99720 0.93457 1.20792 1.00179 0.94915 0.98214 1.21084 0.98041 0.93959 0.97600 1.17865 0.99132 0.92632 0.93924 0.92310 0.92079 0.88587 0.83548 0.95067 0.98464 0.92851 0.84894 0.85936 0.85885 0.85964 0.86398 0.86201 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.58 9.18 -39.27 -0.36 -5.94 16 3 C 0.44 8.04 7.07 36.01 0.25 8.30 16 4 O -0.50 -10.62 15.05 -18.75 -0.28 -10.91 16 5 C 0.13 2.45 2.12 -70.01 -0.15 2.30 16 6 H 0.12 2.16 6.36 -51.93 -0.33 1.83 16 7 N -0.65 -13.97 5.10 -110.45 -0.56 -14.54 16 8 C 0.19 4.96 5.13 -4.97 -0.03 4.93 16 9 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 10 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.06 -0.91 4.98 -104.53 -0.52 -1.43 16 18 C -0.09 -1.32 9.25 -39.93 -0.37 -1.69 16 19 C -0.11 -1.42 9.95 -39.93 -0.40 -1.82 16 20 C -0.11 -1.35 9.77 -39.49 -0.39 -1.73 16 21 C -0.05 -0.70 5.74 -106.84 -0.61 -1.32 16 22 C -0.11 -1.22 9.77 -39.48 -0.39 -1.61 16 23 C -0.12 -1.25 9.95 -39.93 -0.40 -1.65 16 24 C -0.12 -1.41 9.95 -39.93 -0.40 -1.81 16 25 C -0.09 -1.21 8.43 -39.48 -0.33 -1.55 16 26 C -0.04 -0.52 5.72 -106.83 -0.61 -1.13 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.34 7.43 7.15 -39.29 -0.28 7.15 16 31 H 0.03 0.86 8.06 -51.93 -0.42 0.44 16 32 H 0.00 -0.07 7.62 -51.93 -0.40 -0.47 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.13 2.06 6.83 -52.49 -0.36 1.70 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.72 6.08 -52.49 -0.32 1.40 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -32.56 339.54 -9.08 -41.64 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.03 Total: 6.00 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.68 Total: -12.06 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.17 Total: -40.69 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.64 Total: -16.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.56 -9.08 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932223607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.199 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds