Wall clock time and date at job start Fri Apr 10 2020 20:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99686 * 2 1 4 4 O 1.20824 * 120.00043 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99644 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47194 * 60.00257 * 5 3 2 7 7 N 1.46898 * 109.46884 * 179.97438 * 5 3 2 8 8 C 1.46905 * 111.00258 * 275.00157 * 7 5 3 9 9 C 1.50698 * 109.46990 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00609 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99453 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00474 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99651 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47465 * 89.99916 * 13 11 9 15 15 H 1.48503 * 109.46587 * 210.00113 * 13 11 9 16 16 H 1.48502 * 109.47002 * 329.99621 * 13 11 9 17 17 C 1.50698 * 109.47259 * 300.00035 * 5 3 2 18 18 C 1.36122 * 120.17200 * 265.33759 * 17 5 3 19 19 C 1.39333 * 120.98705 * 180.24153 * 18 17 5 20 20 C 1.36130 * 120.98770 * 359.43812 * 19 18 17 21 21 C 1.40500 * 119.65433 * 0.26590 * 20 19 18 22 22 C 1.40549 * 121.29304 * 179.97438 * 21 20 19 23 23 C 1.36088 * 119.65533 * 179.97438 * 22 21 20 24 24 C 1.39379 * 120.99109 * 0.04080 * 23 22 21 25 25 C 1.36089 * 120.99662 * 359.95651 * 24 23 22 26 26 C 1.40503 * 120.17334 * 84.99789 * 17 5 3 27 27 H 1.08997 * 109.47059 * 299.99737 * 1 2 3 28 28 H 1.08999 * 109.47417 * 59.99967 * 1 2 3 29 29 H 1.08999 * 109.46784 * 179.97438 * 1 2 3 30 30 H 1.00905 * 110.99840 * 38.95170 * 7 5 3 31 31 H 1.09006 * 109.46682 * 300.00223 * 8 7 5 32 32 H 1.08996 * 109.46895 * 59.99669 * 8 7 5 33 33 H 0.96998 * 120.00341 * 179.97438 * 12 11 9 34 34 H 1.08000 * 119.50893 * 359.96012 * 18 17 5 35 35 H 1.08002 * 119.50939 * 179.72609 * 19 18 17 36 36 H 1.07998 * 120.17215 * 180.27939 * 20 19 18 37 37 H 1.08006 * 120.16948 * 359.97438 * 22 21 20 38 38 H 1.07993 * 119.50253 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.50012 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.17649 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9558 0.7810 -0.8908 7 7 3.9828 2.6836 -0.0011 8 6 4.0169 3.2221 -1.3675 9 6 4.4468 4.6660 -1.3278 10 1 4.6725 5.1365 -0.3822 11 6 4.5529 5.3860 -2.4988 12 7 4.2785 4.8130 -3.6503 13 14 5.0864 7.1756 -2.4497 14 1 6.5653 7.2544 -2.5586 15 1 4.4668 7.9080 -3.5833 16 1 4.6511 7.7869 -1.1683 17 6 4.1057 0.5915 1.2295 18 6 4.3869 1.3162 2.3470 19 6 4.8908 0.7026 3.4919 20 6 5.1059 -0.6411 3.5300 21 6 4.8218 -1.4230 2.3978 22 6 5.0314 -2.8127 2.3990 23 6 4.7443 -3.5380 1.2839 24 6 4.2451 -2.9233 0.1368 25 6 4.0295 -1.5802 0.0988 26 6 4.3143 -0.7979 1.2313 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.3830 3.2382 0.5912 31 1 4.7241 2.6483 -1.9665 32 1 3.0237 3.1511 -1.8108 33 1 4.3528 5.3197 -4.4741 34 1 4.2211 2.3834 2.3446 35 1 5.1097 1.3012 4.3638 36 1 5.4927 -1.1037 4.4260 37 1 5.4183 -3.3025 3.2805 38 1 4.9066 -4.6056 1.2874 39 1 4.0259 -3.5221 -0.7349 40 1 3.6419 -1.1177 -0.7969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932223607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:11 Heat of formation + Delta-G solvation = -55.489857 kcal Electronic energy + Delta-G solvation = -23948.755392 eV Core-core repulsion = 20499.590027 eV Total energy + Delta-G solvation = -3449.165365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08437 -41.00052 -38.32174 -37.40469 -36.62748 -34.98840 -33.47909 -31.18596 -30.80434 -29.32458 -28.56301 -26.60035 -24.22560 -24.19920 -23.40635 -22.84249 -21.22862 -19.10849 -18.74643 -18.24136 -18.16407 -17.88661 -17.19760 -17.03760 -16.65882 -15.68891 -15.49641 -15.17015 -14.84007 -14.67567 -14.60278 -14.30127 -14.23749 -14.01844 -13.83168 -13.68431 -13.15575 -12.95716 -12.78621 -12.71896 -12.59335 -12.26449 -12.11922 -11.90646 -11.88485 -11.75240 -11.63799 -11.34568 -10.73507 -10.65366 -9.57088 -9.43648 -8.71410 -8.25982 -6.37006 -0.36072 0.17798 0.95163 1.17092 1.39662 1.42209 1.53213 1.67661 2.19701 2.38024 3.08135 3.13041 3.30940 3.52079 3.82029 3.87549 4.03247 4.07134 4.15310 4.22512 4.23247 4.25208 4.41362 4.54876 4.59483 4.60494 4.73276 4.89297 4.91852 5.09076 5.13616 5.21515 5.29336 5.36146 5.43569 5.49444 5.61090 5.69938 5.79267 5.90509 5.98607 6.15914 6.19007 6.37769 6.60170 6.78029 7.32696 8.86293 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.016415 B = 0.004299 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.377300 B = 6511.562482 C = 7078.704869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.441 3.559 4 O -0.533 6.533 5 C 0.137 3.863 6 H 0.112 0.888 7 N -0.645 5.645 8 C 0.208 3.792 9 C -0.536 4.536 10 H 0.066 0.934 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.976 3.024 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.264 1.264 17 C -0.082 4.082 18 C -0.098 4.098 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.073 4.073 22 C -0.105 4.105 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.050 4.050 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.138 0.862 30 H 0.342 0.658 31 H 0.009 0.991 32 H -0.037 1.037 33 H 0.266 0.734 34 H 0.119 0.881 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 -18.664 13.829 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.283 3.717 4 O -0.422 6.422 5 C 0.024 3.976 6 H 0.130 0.870 7 N -0.276 5.276 8 C 0.081 3.919 9 C -0.574 4.574 10 H 0.085 0.915 11 C -0.196 4.196 12 N -0.573 5.573 13 Si 0.800 3.200 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.188 1.188 17 C -0.082 4.082 18 C -0.116 4.116 19 C -0.142 4.142 20 C -0.114 4.114 21 C -0.073 4.073 22 C -0.123 4.123 23 C -0.138 4.138 24 C -0.132 4.132 25 C -0.138 4.138 26 C -0.051 4.051 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.028 0.972 32 H -0.020 1.020 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.167 0.833 36 H 0.179 0.821 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.848 -18.480 13.645 22.987 hybrid contribution -1.234 1.514 -1.038 2.212 sum -2.082 -16.966 12.607 21.239 Atomic orbital electron populations 1.23552 0.75370 1.05739 1.02116 1.86579 1.24610 1.32035 1.83270 1.25316 0.93533 0.81739 0.71091 1.90663 1.67318 1.37593 1.46671 1.20315 0.84531 0.93148 0.99602 0.87001 1.61045 1.53513 0.99591 1.13415 1.19322 0.93222 0.95083 0.84312 1.21433 1.45926 0.96247 0.93760 0.91549 1.25951 0.95118 1.03766 0.94724 1.70084 1.49813 1.38917 0.98493 0.85287 0.78609 0.78146 0.77983 1.19424 1.20681 1.18846 1.19135 1.02406 0.92944 0.93751 1.20895 0.97534 1.00362 0.92793 1.21096 0.99431 0.95744 0.97971 1.21417 0.98439 0.93590 0.97965 1.18367 1.00292 0.95172 0.93431 1.21344 0.99432 0.91547 0.99975 1.21201 0.98581 1.01459 0.92599 1.21140 0.98401 0.94078 0.99552 1.21088 1.00336 0.95171 0.97229 1.18006 0.99829 0.91951 0.95274 0.92146 0.92730 0.84419 0.83777 0.97249 1.01962 0.92524 0.86306 0.83349 0.82080 0.82543 0.82977 0.84096 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.35 -11.30 9.18 -51.45 -0.47 -11.77 16 3 C 0.44 17.38 7.07 71.24 0.50 17.88 16 4 O -0.53 -24.40 15.05 21.97 0.33 -24.07 16 5 C 0.14 5.39 2.12 43.43 0.09 5.48 16 6 H 0.11 4.48 6.36 -2.39 -0.02 4.46 16 7 N -0.64 -29.71 5.10 -503.36 -2.57 -32.27 16 8 C 0.21 11.66 5.13 85.56 0.44 12.10 16 9 C -0.54 -31.64 9.32 25.60 0.24 -31.40 16 10 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 11 C 0.00 0.16 5.46 84.66 0.46 0.63 16 12 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 13 Si 0.98 45.43 29.54 68.60 2.03 47.46 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 17 C -0.08 -2.76 4.98 -19.81 -0.10 -2.86 16 18 C -0.10 -3.05 9.25 22.04 0.20 -2.85 16 19 C -0.12 -2.98 9.95 22.04 0.22 -2.76 16 20 C -0.10 -2.02 9.77 22.33 0.22 -1.80 16 21 C -0.07 -1.76 5.74 -21.30 -0.12 -1.88 16 22 C -0.11 -1.91 9.77 22.33 0.22 -1.69 16 23 C -0.12 -2.07 9.95 22.04 0.22 -1.85 16 24 C -0.11 -2.39 9.95 22.04 0.22 -2.17 16 25 C -0.12 -3.30 8.43 22.33 0.19 -3.11 16 26 C -0.05 -1.49 5.72 -21.30 -0.12 -1.61 16 27 H 0.06 1.48 8.13 -2.39 -0.02 1.47 16 28 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.34 15.89 7.15 -89.69 -0.64 15.25 16 31 H 0.01 0.56 8.06 -2.38 -0.02 0.54 16 32 H -0.04 -2.32 7.62 -2.39 -0.02 -2.33 16 33 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.12 3.92 6.83 -2.91 -0.02 3.90 16 35 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.11 3.28 6.08 -2.91 -0.02 3.27 16 Total: -1.00 -73.95 339.54 4.10 -69.85 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.42 Total: 24.28 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.08 Total: -16.05 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -2.28 Total: -89.69 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.14 Total: -35.85 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -73.95 4.10 -69.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932223607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.361 kcal (2) G-P(sol) polarization free energy of solvation -73.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds