Wall clock time and date at job start Fri Apr 10 2020 20:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47163 * 2 1 4 4 C 1.50699 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.39658 * 126.07010 * 125.00088 * 4 3 2 6 6 C 1.38442 * 105.36093 * 179.97438 * 5 4 3 7 7 C 1.47101 * 126.89546 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99265 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00553 * 180.02562 * 7 6 5 10 10 C 1.39098 * 120.00652 * 185.09878 * 9 7 6 11 11 C 1.39529 * 119.83155 * 34.48268 * 10 9 7 12 12 C 1.36357 * 120.16101 * 180.25618 * 11 10 9 13 13 C 1.40880 * 119.83219 * 359.50461 * 12 11 10 14 14 C 1.41137 * 120.16099 * 180.24841 * 13 12 11 15 15 H 1.07999 * 119.99942 * 25.63280 * 14 13 12 16 16 C 1.39910 * 120.00186 * 205.64106 * 14 13 12 17 17 N 1.30869 * 120.00008 * 16.84272 * 16 14 13 18 18 Si 1.86793 * 119.99904 * 196.85142 * 16 14 13 19 19 H 1.48499 * 109.47581 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47460 * 119.99572 * 18 16 14 21 21 H 1.48501 * 109.47145 * 239.99461 * 18 16 14 22 22 C 1.40881 * 119.68317 * 0.51908 * 13 12 11 23 23 C 1.36368 * 119.82655 * 359.73009 * 22 13 12 24 24 N 1.36624 * 106.22010 * 0.22476 * 6 5 4 25 25 H 0.96997 * 125.19113 * 179.74419 * 24 6 5 26 26 N 1.28445 * 109.61366 * 359.61557 * 24 6 5 27 27 H 1.09007 * 109.46538 * 299.99576 * 1 2 3 28 28 H 1.08993 * 109.47390 * 59.99395 * 1 2 3 29 29 H 1.09003 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46538 * 240.00424 * 2 1 3 31 31 H 1.08993 * 109.47390 * 120.00605 * 2 1 3 32 32 H 1.08995 * 109.47137 * 60.00033 * 3 2 1 33 33 H 1.09008 * 109.47053 * 300.00349 * 3 2 1 34 34 H 1.08006 * 127.32078 * 359.97438 * 5 4 3 35 35 H 0.97009 * 119.99607 * 5.09237 * 9 7 6 36 36 H 1.07992 * 119.91713 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.08105 * 179.74407 * 12 11 10 38 38 H 0.97003 * 120.00116 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.09204 * 179.71271 * 22 13 12 40 40 H 1.07998 * 119.91490 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3689 2.0901 -0.9256 6 6 5.6640 1.8097 -0.5248 7 6 6.9058 2.2617 -1.1710 8 8 6.8544 2.9578 -2.1671 9 7 8.1004 1.9036 -0.6600 10 6 9.2725 2.4162 -1.2062 11 6 9.2936 3.7187 -1.7061 12 6 10.4375 4.2262 -2.2478 13 6 11.6026 3.4355 -2.2922 14 6 12.7918 3.9556 -2.8465 15 1 12.9616 5.0221 -2.8563 16 6 13.7506 3.0896 -3.3835 17 7 13.4270 1.8559 -3.6766 18 14 15.4926 3.6943 -3.6818 19 1 15.6001 5.1170 -3.2701 20 1 16.4436 2.8757 -2.8877 21 1 15.8189 3.5712 -5.1252 22 6 11.5735 2.1211 -1.7860 23 6 10.4209 1.6253 -1.2519 24 7 5.5576 1.0244 0.5881 25 1 6.3043 0.6655 1.0925 26 7 4.3178 0.8360 0.8659 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 4.0598 2.6836 -1.7734 35 1 8.1428 1.2884 0.0888 36 1 8.4006 4.3247 -1.6682 37 1 10.4512 5.2331 -2.6381 38 1 14.0918 1.2554 -4.0485 39 1 12.4616 1.5076 -1.8210 40 1 10.3968 0.6178 -0.8638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073984708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:25 Heat of formation + Delta-G solvation = 41.881728 kcal Electronic energy + Delta-G solvation = -22407.254715 eV Core-core repulsion = 18994.604450 eV Total energy + Delta-G solvation = -3412.650265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.60168 -39.53568 -37.28257 -35.54703 -34.63288 -33.14475 -31.70215 -30.92298 -29.66109 -28.92305 -27.21532 -25.40253 -23.41806 -22.13165 -21.47387 -20.87103 -20.58062 -19.64110 -18.66646 -17.40450 -16.59648 -15.92690 -15.72029 -15.27315 -15.07493 -14.64175 -14.36323 -13.98800 -13.77098 -13.62214 -13.31424 -13.07373 -12.74155 -12.47332 -12.19861 -11.93445 -11.72308 -11.49196 -11.45564 -11.20465 -11.10459 -11.07733 -10.82086 -10.63038 -10.13229 -9.70820 -9.60278 -9.27934 -9.21927 -9.12498 -9.03854 -7.64036 -7.09230 -6.82756 -4.38554 1.26363 2.43649 2.61226 2.72233 3.00873 3.03646 3.05689 3.09360 3.42269 3.56085 3.87239 4.40600 4.54425 4.63533 4.83721 4.86743 5.00217 5.25777 5.37207 5.51852 5.58227 5.61334 5.64733 5.72896 5.85622 6.01665 6.09614 6.11052 6.32135 6.40507 6.61445 6.75689 6.89613 6.95718 7.07961 7.18272 7.49882 7.58607 7.75459 7.89563 7.94993 8.12608 8.18745 8.47295 8.56586 8.79804 8.89180 10.09331 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.053148 B = 0.002362 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.702707 B =11853.894340 C =12018.161948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.032 4.032 4 C 0.026 3.974 5 C -0.158 4.158 6 C -0.022 4.022 7 C 0.569 3.431 8 O -0.510 6.510 9 N -0.642 5.642 10 C -0.016 4.016 11 C -0.072 4.072 12 C -0.215 4.215 13 C 0.107 3.893 14 C -0.454 4.454 15 H 0.080 0.920 16 C 0.073 3.927 17 N -0.790 5.790 18 Si 0.910 3.090 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.154 4.154 23 C -0.109 4.109 24 N -0.381 5.381 25 H 0.443 0.557 26 N -0.273 5.273 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.389 0.611 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.281 0.719 39 H 0.122 0.878 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 -4.241 7.968 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.071 4.071 4 C -0.132 4.132 5 C -0.187 4.187 6 C -0.151 4.151 7 C 0.354 3.646 8 O -0.384 6.384 9 N -0.285 5.285 10 C -0.108 4.108 11 C -0.092 4.092 12 C -0.235 4.235 13 C 0.104 3.896 14 C -0.483 4.483 15 H 0.098 0.902 16 C -0.145 4.145 17 N -0.415 5.415 18 Si 0.734 3.266 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.199 1.199 22 C -0.174 4.174 23 C -0.129 4.129 24 N -0.097 5.097 25 H 0.288 0.712 26 N -0.107 5.107 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.222 0.778 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.314 -4.574 8.054 17.897 hybrid contribution 1.345 0.045 -0.307 1.381 sum -13.968 -4.530 7.746 16.602 Atomic orbital electron populations 1.21784 0.95699 1.01669 1.01828 1.21484 0.95500 0.96081 1.02693 1.19968 0.86077 0.97889 1.03178 1.22005 0.96825 1.00146 0.94253 1.22060 0.89669 1.04516 1.02414 1.22004 0.96783 1.02853 0.93480 1.17007 0.81582 0.82040 0.83954 1.90852 1.86024 1.37608 1.23895 1.42815 1.04938 1.46786 1.33915 1.17073 0.85240 0.94432 1.14014 1.20244 0.97417 0.92917 0.98600 1.20657 0.92893 1.00657 1.09287 1.17698 0.91748 0.91653 0.88457 1.19628 1.00717 0.94835 1.33113 0.90158 1.25961 1.00885 0.94455 0.93183 1.69846 1.35439 1.06115 1.30078 0.86228 0.81376 0.80344 0.78625 1.18308 1.19664 1.19924 1.20902 0.97035 0.97710 1.01723 1.20211 0.93418 0.96801 1.02483 1.43615 1.06454 1.37892 1.21726 0.71209 1.73013 0.89636 1.22880 1.25162 0.92692 0.92630 0.92760 0.91945 0.91411 0.90431 0.89940 0.81907 0.77836 0.88030 0.88486 0.90777 0.85988 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.97 5.90 -26.73 -0.16 -1.13 16 3 C -0.03 -0.28 5.79 -27.89 -0.16 -0.44 16 4 C 0.03 0.31 6.49 -82.47 -0.54 -0.22 16 5 C -0.16 -2.12 10.77 -38.98 -0.42 -2.54 16 6 C -0.02 -0.32 7.15 -82.06 -0.59 -0.91 16 7 C 0.57 10.12 7.52 -12.67 -0.10 10.02 16 8 O -0.51 -11.12 14.64 5.24 0.08 -11.04 16 9 N -0.64 -10.98 5.30 -10.81 -0.06 -11.04 16 10 C -0.02 -0.34 6.27 -83.61 -0.52 -0.86 16 11 C -0.07 -1.69 8.57 -39.78 -0.34 -2.03 16 12 C -0.21 -5.35 9.74 -39.26 -0.38 -5.73 16 13 C 0.11 2.81 5.57 -106.80 -0.59 2.22 16 14 C -0.45 -11.79 9.04 -37.86 -0.34 -12.13 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 16 C 0.07 1.80 5.15 -17.34 -0.09 1.71 16 17 N -0.79 -19.95 10.95 55.55 0.61 -19.34 16 18 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.15 -3.85 8.63 -39.26 -0.34 -4.19 16 23 C -0.11 -2.42 9.90 -39.78 -0.39 -2.81 16 24 N -0.38 -4.42 6.85 33.48 0.23 -4.19 16 25 H 0.44 3.70 8.23 -190.46 -1.57 2.14 16 26 N -0.27 -3.37 12.11 33.63 0.41 -2.96 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.61 8.12 -51.92 -0.42 0.19 16 34 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 35 H 0.39 4.99 8.01 -40.82 -0.33 4.66 16 36 H 0.10 2.35 6.47 -52.49 -0.34 2.01 16 37 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 39 H 0.12 3.13 6.18 -52.49 -0.32 2.80 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -30.59 343.38 -9.52 -40.11 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.33 Total: 9.81 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -4.59 Total: -19.68 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 1.19 Total: -37.54 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.59 -9.52 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073984708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.987 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds