Wall clock time and date at job start Fri Apr 10 2020 20:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47163 * 2 1 4 4 C 1.50699 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.39658 * 126.07010 * 125.00088 * 4 3 2 6 6 C 1.38442 * 105.36093 * 179.97438 * 5 4 3 7 7 C 1.47101 * 126.89546 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99265 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00553 * 180.02562 * 7 6 5 10 10 C 1.39098 * 120.00652 * 185.09878 * 9 7 6 11 11 C 1.39529 * 119.83155 * 34.48268 * 10 9 7 12 12 C 1.36357 * 120.16101 * 180.25618 * 11 10 9 13 13 C 1.40880 * 119.83219 * 359.50461 * 12 11 10 14 14 C 1.41137 * 120.16099 * 180.24841 * 13 12 11 15 15 H 1.07999 * 119.99942 * 25.63280 * 14 13 12 16 16 C 1.39910 * 120.00186 * 205.64106 * 14 13 12 17 17 N 1.30869 * 120.00008 * 16.84272 * 16 14 13 18 18 Si 1.86793 * 119.99904 * 196.85142 * 16 14 13 19 19 H 1.48499 * 109.47581 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47460 * 119.99572 * 18 16 14 21 21 H 1.48501 * 109.47145 * 239.99461 * 18 16 14 22 22 C 1.40881 * 119.68317 * 0.51908 * 13 12 11 23 23 C 1.36368 * 119.82655 * 359.73009 * 22 13 12 24 24 N 1.36624 * 106.22010 * 0.22476 * 6 5 4 25 25 H 0.96997 * 125.19113 * 179.74419 * 24 6 5 26 26 N 1.28445 * 109.61366 * 359.61557 * 24 6 5 27 27 H 1.09007 * 109.46538 * 299.99576 * 1 2 3 28 28 H 1.08993 * 109.47390 * 59.99395 * 1 2 3 29 29 H 1.09003 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46538 * 240.00424 * 2 1 3 31 31 H 1.08993 * 109.47390 * 120.00605 * 2 1 3 32 32 H 1.08995 * 109.47137 * 60.00033 * 3 2 1 33 33 H 1.09008 * 109.47053 * 300.00349 * 3 2 1 34 34 H 1.08006 * 127.32078 * 359.97438 * 5 4 3 35 35 H 0.97009 * 119.99607 * 5.09237 * 9 7 6 36 36 H 1.07992 * 119.91713 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.08105 * 179.74407 * 12 11 10 38 38 H 0.97003 * 120.00116 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.09204 * 179.71271 * 22 13 12 40 40 H 1.07998 * 119.91490 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3689 2.0901 -0.9256 6 6 5.6640 1.8097 -0.5248 7 6 6.9058 2.2617 -1.1710 8 8 6.8544 2.9578 -2.1671 9 7 8.1004 1.9036 -0.6600 10 6 9.2725 2.4162 -1.2062 11 6 9.2936 3.7187 -1.7061 12 6 10.4375 4.2262 -2.2478 13 6 11.6026 3.4355 -2.2922 14 6 12.7918 3.9556 -2.8465 15 1 12.9616 5.0221 -2.8563 16 6 13.7506 3.0896 -3.3835 17 7 13.4270 1.8559 -3.6766 18 14 15.4926 3.6943 -3.6818 19 1 15.6001 5.1170 -3.2701 20 1 16.4436 2.8757 -2.8877 21 1 15.8189 3.5712 -5.1252 22 6 11.5735 2.1211 -1.7860 23 6 10.4209 1.6253 -1.2519 24 7 5.5576 1.0244 0.5881 25 1 6.3043 0.6655 1.0925 26 7 4.3178 0.8360 0.8659 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 4.0598 2.6836 -1.7734 35 1 8.1428 1.2884 0.0888 36 1 8.4006 4.3247 -1.6682 37 1 10.4512 5.2331 -2.6381 38 1 14.0918 1.2554 -4.0485 39 1 12.4616 1.5076 -1.8210 40 1 10.3968 0.6178 -0.8638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073984708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:25 Heat of formation + Delta-G solvation = 23.807105 kcal Electronic energy + Delta-G solvation = -22408.038489 eV Core-core repulsion = 18994.604450 eV Total energy + Delta-G solvation = -3413.434039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.62863 -41.10272 -39.05637 -36.40220 -36.18330 -34.87222 -32.60084 -32.14712 -31.50486 -30.65058 -27.95004 -27.10594 -24.83666 -23.32747 -22.85408 -22.29810 -21.85448 -20.73408 -20.00180 -19.27593 -18.19212 -17.17353 -16.96259 -16.86328 -16.15642 -15.80243 -15.64359 -15.53978 -14.91793 -14.84052 -14.64413 -14.41111 -14.03352 -13.92227 -13.71790 -13.29220 -13.07615 -12.90501 -12.80248 -12.57032 -12.44177 -12.11393 -11.88519 -11.76786 -11.50595 -11.39964 -11.26619 -11.05000 -10.78553 -10.23761 -10.13770 -9.52272 -8.92621 -8.64607 -6.31725 0.05750 0.84934 1.10663 1.39346 1.44236 1.51729 1.54711 1.74950 2.06488 2.12766 2.21044 2.71500 3.46378 3.62726 3.70084 3.88845 4.24948 4.26623 4.34942 4.42715 4.48238 4.52726 4.83379 4.86976 4.90138 4.93918 5.04177 5.07837 5.08946 5.24237 5.24910 5.35043 5.40075 5.46969 5.53554 5.61416 5.79925 5.93205 5.99286 6.05023 6.31724 6.51399 6.61346 6.89179 6.90255 6.93385 7.14758 8.29673 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.053148 B = 0.002362 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.702707 B =11853.894340 C =12018.161948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.033 4.033 4 C 0.026 3.974 5 C -0.161 4.161 6 C -0.038 4.038 7 C 0.576 3.424 8 O -0.554 6.554 9 N -0.633 5.633 10 C 0.000 4.000 11 C -0.083 4.083 12 C -0.232 4.232 13 C 0.077 3.923 14 C -0.491 4.491 15 H 0.076 0.924 16 C 0.034 3.966 17 N -0.821 5.821 18 Si 0.985 3.015 19 H -0.259 1.259 20 H -0.261 1.261 21 H -0.267 1.267 22 C -0.172 4.172 23 C -0.106 4.106 24 N -0.365 5.365 25 H 0.457 0.543 26 N -0.272 5.272 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.167 0.833 35 H 0.413 0.587 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.290 0.710 39 H 0.112 0.888 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 -5.265 9.060 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.071 4.071 4 C -0.132 4.132 5 C -0.190 4.190 6 C -0.167 4.167 7 C 0.363 3.637 8 O -0.431 6.431 9 N -0.277 5.277 10 C -0.093 4.093 11 C -0.103 4.103 12 C -0.253 4.253 13 C 0.074 3.926 14 C -0.520 4.520 15 H 0.094 0.906 16 C -0.181 4.181 17 N -0.447 5.447 18 Si 0.806 3.194 19 H -0.183 1.183 20 H -0.185 1.185 21 H -0.192 1.192 22 C -0.192 4.192 23 C -0.126 4.126 24 N -0.083 5.083 25 H 0.305 0.695 26 N -0.106 5.106 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.185 0.815 35 H 0.250 0.750 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.456 -5.635 9.197 19.676 hybrid contribution 1.474 0.304 -0.577 1.612 sum -14.982 -5.331 8.620 18.088 Atomic orbital electron populations 1.21758 0.94278 1.02138 1.02497 1.21438 0.96706 0.95449 1.01831 1.20127 0.83951 0.98562 1.04504 1.22455 0.98208 0.99199 0.93314 1.22313 0.89692 1.04296 1.02733 1.21455 0.95367 1.04870 0.94996 1.17342 0.82355 0.80744 0.83241 1.90834 1.86775 1.39503 1.25961 1.42636 1.03541 1.47029 1.34530 1.17104 0.86564 0.93588 1.12030 1.20366 0.96902 0.94025 0.99034 1.20787 0.93364 1.00910 1.10196 1.18024 0.92406 0.92675 0.89496 1.19842 1.02045 0.95097 1.35052 0.90568 1.26787 1.04633 0.94409 0.92269 1.69878 1.37051 1.07217 1.30576 0.85113 0.75893 0.79712 0.78725 1.18254 1.18519 1.19222 1.20919 0.97871 0.97465 1.02937 1.20480 0.92495 0.98232 1.01410 1.43626 1.06876 1.36948 1.20841 0.69537 1.73043 0.89782 1.22635 1.25127 0.92004 0.91991 0.92443 0.92816 0.92268 0.89249 0.88485 0.81505 0.75029 0.87933 0.88536 0.89902 0.87000 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.64 5.90 30.59 0.18 -1.46 16 3 C -0.03 -0.49 5.79 29.85 0.17 -0.31 16 4 C 0.03 0.56 6.49 43.04 0.28 0.84 16 5 C -0.16 -4.07 10.77 22.66 0.24 -3.82 16 6 C -0.04 -1.02 7.15 40.77 0.29 -0.73 16 7 C 0.58 19.89 7.52 86.57 0.65 20.54 16 8 O -0.55 -24.16 14.64 -4.16 -0.06 -24.22 16 9 N -0.63 -20.63 5.30 -306.35 -1.62 -22.26 16 10 C 0.00 0.01 6.27 38.61 0.24 0.25 16 11 C -0.08 -3.98 8.57 22.14 0.19 -3.79 16 12 C -0.23 -12.01 9.74 22.48 0.22 -11.79 16 13 C 0.08 4.16 5.57 -21.27 -0.12 4.04 16 14 C -0.49 -26.44 9.04 23.39 0.21 -26.23 16 15 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 16 C 0.03 1.70 5.15 85.24 0.44 2.14 16 17 N -0.82 -42.17 10.95 21.82 0.24 -41.93 16 18 Si 0.99 37.55 29.59 68.60 2.03 39.58 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 21 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 22 C -0.17 -8.77 8.63 22.48 0.19 -8.57 16 23 C -0.11 -4.63 9.90 22.14 0.22 -4.42 16 24 N -0.36 -7.59 6.85 -48.00 -0.33 -7.92 16 25 H 0.46 6.37 8.23 -220.01 -1.81 4.55 16 26 N -0.27 -6.02 12.11 -47.50 -0.58 -6.60 16 27 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.17 8.12 -2.38 -0.02 1.15 16 34 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 35 H 0.41 9.50 8.01 -92.70 -0.74 8.76 16 36 H 0.10 4.83 6.47 -2.91 -0.02 4.82 16 37 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 39 H 0.11 5.87 6.18 -2.91 -0.02 5.85 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -67.28 343.38 2.34 -64.94 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -1.47 Total: 32.58 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 4.13 Total: -34.17 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -2.29 Total: -78.71 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.06 Total: -24.22 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -67.28 2.34 -64.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073984708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.748 kcal (2) G-P(sol) polarization free energy of solvation -67.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds