Wall clock time and date at job start Fri Apr 10 2020 20:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47451 * 2 1 4 4 C 1.50699 * 109.46962 * 239.99832 * 2 1 3 5 5 C 1.35366 * 126.38112 * 215.00016 * 4 2 1 6 6 C 1.41524 * 105.50186 * 180.02562 * 5 4 2 7 7 C 1.47658 * 126.52031 * 180.02562 * 6 5 4 8 8 O 1.21579 * 119.99930 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99670 * 179.97438 * 7 6 5 10 10 C 1.39137 * 119.99589 * 176.69066 * 9 7 6 11 11 C 1.39507 * 119.83238 * 217.56293 * 10 9 7 12 12 C 1.36363 * 120.16301 * 179.76142 * 11 10 9 13 13 C 1.40880 * 119.83288 * 0.51318 * 12 11 10 14 14 C 1.41142 * 120.16295 * 179.71834 * 13 12 11 15 15 H 1.07998 * 119.99893 * 157.91977 * 14 13 12 16 16 C 1.39905 * 119.99700 * 337.92535 * 14 13 12 17 17 N 1.30868 * 120.00524 * 327.60556 * 16 14 13 18 18 Si 1.86809 * 119.99697 * 147.61129 * 16 14 13 19 19 H 1.48499 * 109.47066 * 94.98314 * 18 16 14 20 20 H 1.48491 * 109.47029 * 214.98479 * 18 16 14 21 21 H 1.48498 * 109.47089 * 334.98342 * 18 16 14 22 22 C 1.40878 * 119.67471 * 359.74041 * 13 12 11 23 23 C 1.36360 * 119.83115 * 0.02562 * 22 13 12 24 24 N 1.31835 * 106.95823 * 359.97438 * 6 5 4 25 25 N 1.28470 * 110.06809 * 359.72168 * 24 6 5 26 26 H 0.96997 * 124.88317 * 180.26999 * 25 24 6 27 27 H 1.09000 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46874 * 60.00189 * 1 2 3 29 29 H 1.09003 * 109.46934 * 300.00311 * 1 2 3 30 30 H 1.09000 * 109.47293 * 120.00145 * 2 1 3 31 31 H 1.08997 * 109.46688 * 59.99601 * 3 2 1 32 32 H 1.08994 * 109.47159 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46991 * 300.00331 * 3 2 1 34 34 H 1.07996 * 127.24629 * 359.96718 * 5 4 2 35 35 H 0.96999 * 120.00250 * 356.69025 * 9 7 6 36 36 H 1.07995 * 119.91890 * 0.02562 * 11 10 9 37 37 H 1.08005 * 120.08626 * 180.25423 * 12 11 10 38 38 H 0.96994 * 120.00290 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.08401 * 179.97438 * 22 13 12 40 40 H 1.07997 * 119.91595 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 3.1416 -1.4815 -1.3158 6 6 3.1931 -1.9227 -2.6595 7 6 4.2220 -2.7960 -3.2588 8 8 5.1409 -3.2085 -2.5779 9 7 4.1418 -3.1365 -4.5604 10 6 5.1473 -3.9023 -5.1423 11 6 5.5455 -3.6437 -6.4541 12 6 6.5336 -4.3868 -7.0293 13 6 7.1451 -5.4249 -6.2992 14 6 8.1643 -6.2023 -6.8898 15 1 8.8671 -6.7350 -6.2663 16 6 8.2642 -6.2828 -8.2830 17 7 7.1849 -6.2268 -9.0208 18 14 9.9386 -6.4704 -9.0900 19 1 10.2083 -7.9088 -9.3418 20 1 9.9529 -5.7311 -10.3777 21 1 10.9854 -5.9203 -8.1918 22 6 6.7339 -5.6836 -4.9768 23 6 5.7478 -4.9290 -4.4132 24 7 2.1472 -1.4067 -3.2740 25 7 1.4564 -0.7015 -2.4518 26 1 0.6403 -0.2280 -2.6768 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 3.8407 -1.7108 -0.5252 35 1 3.3832 -2.8478 -5.0915 36 1 5.0730 -2.8501 -7.0139 37 1 6.8437 -4.1828 -8.0436 38 1 7.2541 -6.2830 -9.9867 39 1 7.1979 -6.4781 -4.4112 40 1 5.4313 -5.1263 -3.3997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078905310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:30 Heat of formation + Delta-G solvation = 44.775317 kcal Electronic energy + Delta-G solvation = -22599.207387 eV Core-core repulsion = 19186.682597 eV Total energy + Delta-G solvation = -3412.524790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.76687 -39.29272 -37.11336 -36.03076 -34.39184 -32.99884 -31.84609 -30.01027 -29.48071 -28.85772 -27.63787 -25.40416 -23.66115 -22.75168 -21.36429 -21.04586 -20.46666 -19.20972 -17.67151 -17.32689 -16.74202 -16.09545 -15.82208 -15.22319 -15.07074 -14.32027 -14.23700 -13.97428 -13.79713 -13.69838 -13.35954 -12.97057 -12.69794 -12.62334 -12.03893 -11.97210 -11.75038 -11.68232 -11.53803 -11.40193 -11.12154 -10.92047 -10.82116 -10.49642 -10.16338 -9.68116 -9.49497 -9.37433 -9.07013 -9.05413 -8.64093 -7.49591 -7.09815 -6.84072 -4.22874 1.64766 2.07462 2.72543 2.78660 3.07101 3.09110 3.15718 3.23600 3.75183 3.87760 3.92214 4.24298 4.35586 4.55198 4.61291 4.66488 4.95541 5.11265 5.24212 5.31964 5.42991 5.51443 5.62840 5.65538 5.73628 5.80437 5.89865 6.25862 6.35204 6.48924 6.83136 6.86628 7.02950 7.04704 7.19392 7.34151 7.61644 7.70306 7.84982 7.96250 8.06713 8.29989 8.38733 8.59264 8.83101 8.88045 9.05624 10.05610 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.048321 B = 0.002490 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.323413 B =11240.697384 C =11439.178353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.026 4.026 3 C -0.146 4.146 4 C 0.017 3.983 5 C -0.176 4.176 6 C 0.003 3.997 7 C 0.583 3.417 8 O -0.526 6.526 9 N -0.633 5.633 10 C -0.022 4.022 11 C -0.099 4.099 12 C -0.172 4.172 13 C 0.113 3.887 14 C -0.465 4.465 15 H 0.082 0.918 16 C 0.088 3.912 17 N -0.769 5.769 18 Si 0.896 3.104 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.257 1.257 22 C -0.224 4.224 23 C -0.065 4.065 24 N -0.263 5.263 25 N -0.382 5.382 26 H 0.440 0.560 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.161 0.839 35 H 0.400 0.600 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.283 0.717 39 H 0.095 0.905 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 12.895 11.870 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.046 4.046 3 C -0.204 4.204 4 C -0.109 4.109 5 C -0.204 4.204 6 C -0.158 4.158 7 C 0.368 3.632 8 O -0.401 6.401 9 N -0.275 5.275 10 C -0.114 4.114 11 C -0.120 4.120 12 C -0.191 4.191 13 C 0.110 3.890 14 C -0.492 4.492 15 H 0.100 0.900 16 C -0.134 4.134 17 N -0.392 5.392 18 Si 0.719 3.281 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.244 4.244 23 C -0.085 4.085 24 N -0.099 5.099 25 N -0.096 5.096 26 H 0.285 0.715 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.179 0.821 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.987 12.589 11.072 21.207 hybrid contribution 0.174 0.327 -0.221 0.431 sum -12.813 12.916 10.851 21.184 Atomic orbital electron populations 1.21904 0.94307 1.02516 1.02383 1.19755 0.95736 0.95808 0.93258 1.21874 1.02087 0.94397 1.02061 1.21324 0.96731 1.03836 0.89008 1.21522 0.99477 1.02258 0.97163 1.22159 0.96369 1.03626 0.93696 1.16906 0.83729 0.80075 0.82520 1.90779 1.33666 1.54529 1.61157 1.42768 1.23670 1.51264 1.09803 1.17060 1.00041 0.99582 0.94677 1.20179 0.98571 0.99538 0.93672 1.20616 1.00255 0.98082 1.00179 1.17603 0.90101 0.90324 0.90955 1.19503 1.12242 1.26393 0.91106 0.89983 1.25945 0.97776 0.91833 0.97831 1.69947 1.30034 1.31811 1.07411 0.86514 0.83483 0.79141 0.78961 1.19489 1.19919 1.18083 1.20594 1.02731 1.03442 0.97585 1.20320 0.96880 0.93218 0.98042 1.73590 1.06224 1.09395 1.20665 1.43232 1.22240 1.37780 1.06344 0.71539 0.91952 0.92917 0.91290 0.88363 0.91712 0.91750 0.92730 0.82115 0.76572 0.89203 0.87458 0.90621 0.88667 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.94 37.16 0.33 -0.39 16 2 C -0.03 -0.16 3.32 -91.77 -0.30 -0.47 16 3 C -0.15 -0.84 9.18 37.16 0.34 -0.50 16 4 C 0.02 0.17 5.92 -82.21 -0.49 -0.32 16 5 C -0.18 -2.36 10.73 -39.35 -0.42 -2.78 16 6 C 0.00 0.05 7.13 -82.77 -0.59 -0.54 16 7 C 0.58 11.63 7.63 -12.41 -0.09 11.53 16 8 O -0.53 -12.12 14.54 5.30 0.08 -12.04 16 9 N -0.63 -12.66 5.29 -10.64 -0.06 -12.72 16 10 C -0.02 -0.51 6.25 -83.60 -0.52 -1.03 16 11 C -0.10 -2.38 9.90 -39.78 -0.39 -2.77 16 12 C -0.17 -4.50 8.74 -39.26 -0.34 -4.84 16 13 C 0.11 3.08 5.57 -106.80 -0.60 2.49 16 14 C -0.46 -12.46 8.94 -37.86 -0.34 -12.80 16 15 H 0.08 2.13 8.02 -52.49 -0.42 1.71 16 16 C 0.09 2.20 4.77 -17.34 -0.08 2.12 16 17 N -0.77 -19.68 11.78 55.55 0.65 -19.03 16 18 Si 0.90 18.44 29.66 -169.99 -5.04 13.39 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.22 -5.84 9.74 -39.26 -0.38 -6.22 16 23 C -0.06 -1.62 8.59 -39.78 -0.34 -1.96 16 24 N -0.26 -3.64 11.93 33.42 0.40 -3.24 16 25 N -0.38 -3.81 6.64 33.50 0.22 -3.59 16 26 H 0.44 2.79 8.13 -190.44 -1.55 1.25 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.20 7.43 -51.93 -0.39 -0.19 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.16 2.04 8.06 -52.49 -0.42 1.61 16 35 H 0.40 6.95 8.55 -40.82 -0.35 6.60 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.11 2.83 6.53 -52.48 -0.34 2.49 16 38 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 39 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.10 2.54 6.45 -52.49 -0.34 2.20 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -31.59 342.93 -9.13 -40.71 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.32 Total: 9.83 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -4.22 Total: -18.49 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 1.22 Total: -38.57 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.04 Total: 13.39 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.59 -9.13 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078905310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.489 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds