Wall clock time and date at job start Fri Apr 10 2020 20:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47132 * 2 1 4 4 N 1.46495 * 109.46821 * 180.02562 * 3 2 1 5 5 C 1.36790 * 120.00010 * 264.46241 * 4 3 2 6 6 H 1.07995 * 120.00242 * 132.02974 * 5 4 3 7 7 C 1.39104 * 120.00030 * 312.02861 * 5 4 3 8 8 N 1.31325 * 120.00099 * 3.27018 * 7 5 4 9 9 Si 1.86798 * 119.99973 * 183.27313 * 7 5 4 10 10 H 1.48499 * 109.47110 * 60.00020 * 9 7 5 11 11 H 1.48505 * 109.47107 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47038 * 300.00061 * 9 7 5 13 13 C 1.34779 * 120.00375 * 84.46733 * 4 3 2 14 14 O 1.21566 * 119.99229 * 4.81816 * 13 4 3 15 15 C 1.48011 * 120.00140 * 184.82161 * 13 4 3 16 16 C 1.39219 * 119.70050 * 174.17445 * 15 13 4 17 17 C 1.39244 * 118.97227 * 179.97438 * 16 15 13 18 18 N 1.39911 * 120.82079 * 179.97438 * 17 16 15 19 19 C 1.36625 * 125.67767 * 359.69020 * 18 17 16 20 20 C 1.34814 * 108.19694 * 179.83449 * 19 18 17 21 21 C 1.40972 * 107.47930 * 0.42175 * 20 19 18 22 22 C 1.34810 * 107.48186 * 359.74002 * 21 20 19 23 23 C 1.39322 * 118.36389 * 359.97438 * 17 16 15 24 24 C 1.38326 * 119.29224 * 0.02562 * 23 17 16 25 25 N 1.31606 * 120.98548 * 359.97438 * 24 23 17 26 26 H 1.09002 * 109.47516 * 299.99829 * 1 2 3 27 27 H 1.09001 * 109.47247 * 59.99636 * 1 2 3 28 28 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47014 * 240.00292 * 2 1 3 30 30 H 1.08994 * 109.46912 * 120.00548 * 2 1 3 31 31 H 1.09004 * 109.46932 * 60.00242 * 3 2 1 32 32 H 1.09001 * 109.47351 * 300.00300 * 3 2 1 33 33 H 0.97002 * 120.00208 * 179.97438 * 8 7 5 34 34 H 1.08001 * 120.51888 * 359.72795 * 16 15 13 35 35 H 1.08009 * 125.89913 * 359.96126 * 19 18 17 36 36 H 1.08001 * 126.25760 * 180.19653 * 20 19 18 37 37 H 1.08002 * 126.25734 * 179.69992 * 21 20 19 38 38 H 1.08008 * 125.90273 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.35509 * 180.02562 * 23 17 16 40 40 H 1.07995 * 119.50691 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1894 1.5565 1.1782 6 1 5.0018 0.8799 1.3987 7 6 3.8391 2.5441 2.0931 8 7 2.8110 3.3255 1.8544 9 14 4.8313 2.7590 3.6611 10 1 6.2409 3.0735 3.3158 11 1 4.2582 3.8712 4.4611 12 1 4.7840 1.5035 4.4528 13 6 4.1784 1.3300 -1.1627 14 8 3.5733 1.3169 -2.2169 15 6 5.6546 1.2225 -1.1551 16 6 6.3350 0.9848 -2.3462 17 6 7.7238 0.8869 -2.3217 18 7 8.4464 0.6482 -3.4957 19 6 7.9106 0.4842 -4.7418 20 6 8.9207 0.2788 -5.6107 21 6 10.1235 0.3069 -4.8761 22 6 9.8049 0.5344 -3.5861 23 6 8.3761 1.0325 -1.0993 24 6 7.6305 1.2671 0.0420 25 7 6.3185 1.3547 -0.0120 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 2.5665 4.0139 2.4925 34 1 5.7939 0.8739 -3.2743 35 1 6.8595 0.5160 -4.9884 36 1 8.8254 0.1180 -6.6744 37 1 11.1183 0.1706 -5.2739 38 1 10.5030 0.6127 -2.7656 39 1 9.4524 0.9629 -1.0433 40 1 8.1326 1.3801 0.9914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288114779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:44 Heat of formation + Delta-G solvation = 72.070308 kcal Electronic energy + Delta-G solvation = -23786.933151 eV Core-core repulsion = 20375.591961 eV Total energy + Delta-G solvation = -3411.341190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.61660 -39.73188 -38.05264 -35.19168 -33.85469 -32.81393 -31.39837 -30.93535 -29.44483 -28.89310 -26.06230 -25.01167 -23.53378 -23.23225 -21.19669 -20.34506 -20.07960 -19.35794 -18.60211 -16.95863 -16.28079 -15.65079 -15.14557 -14.98087 -14.67270 -14.52875 -14.18972 -14.00065 -13.90152 -13.75841 -13.31698 -12.99626 -12.95321 -12.36141 -12.23944 -12.12410 -11.67224 -11.45770 -11.43469 -11.22459 -10.98766 -10.75232 -10.46873 -10.31901 -10.21241 -9.74825 -9.24424 -9.02464 -8.85138 -8.38811 -8.28885 -8.23321 -7.38530 -6.30810 -4.05389 0.97998 1.22372 2.55992 2.79720 2.95944 3.17297 3.22661 3.24592 3.63948 4.09365 4.39519 4.56176 4.72679 4.84885 4.97269 5.06934 5.12898 5.21514 5.37232 5.47640 5.54474 5.77325 5.80194 5.85683 5.95685 5.98499 6.04330 6.16905 6.24244 6.32213 6.48792 6.53073 6.66435 6.80840 6.82775 6.87314 7.11023 7.17363 7.40076 7.42035 7.66409 7.98013 8.35235 8.53462 9.07936 9.38657 9.83480 10.68285 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.004651 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.655719 B = 6018.314062 C = 7415.457585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.107 3.893 4 N -0.404 5.404 5 C -0.297 4.297 6 H 0.114 0.886 7 C 0.040 3.960 8 N -0.873 5.873 9 Si 0.925 3.075 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.502 3.498 14 O -0.602 6.602 15 C 0.146 3.854 16 C -0.153 4.153 17 C 0.163 3.837 18 N -0.393 5.393 19 C -0.007 4.007 20 C -0.195 4.195 21 C -0.193 4.193 22 C -0.015 4.015 23 C -0.200 4.200 24 C 0.111 3.889 25 N -0.417 5.417 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.053 0.947 33 H 0.270 0.730 34 H 0.146 0.854 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 -4.828 -4.488 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.016 4.016 4 N -0.118 5.118 5 C -0.427 4.427 6 H 0.131 0.869 7 C -0.164 4.164 8 N -0.511 5.511 9 Si 0.752 3.248 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.290 3.710 14 O -0.488 6.488 15 C 0.007 3.993 16 C -0.176 4.176 17 C 0.063 3.937 18 N -0.065 5.065 19 C -0.134 4.134 20 C -0.219 4.219 21 C -0.218 4.218 22 C -0.141 4.141 23 C -0.222 4.222 24 C -0.048 4.048 25 N -0.128 5.128 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.163 0.837 35 H 0.185 0.815 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.181 0.819 39 H 0.152 0.848 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.150 -4.450 -3.862 10.057 hybrid contribution 1.143 0.114 0.017 1.148 sum 9.293 -4.335 -3.846 10.952 Atomic orbital electron populations 1.21640 0.96367 1.00439 1.01521 1.21843 0.94964 0.99284 1.01190 1.21741 0.80912 0.94549 1.04387 1.43457 1.05137 1.58128 1.05077 1.20003 1.14657 1.14516 0.93492 0.86878 1.25599 0.96079 0.94824 0.99927 1.69674 1.25173 1.19448 1.36789 0.86032 0.80266 0.77841 0.80678 1.19495 1.21265 1.19884 1.18022 0.84724 0.83642 0.84637 1.90629 1.68441 1.58545 1.31230 1.21411 0.95945 0.94370 0.87590 1.21744 0.91330 1.03291 1.01185 1.17976 0.91226 0.99076 0.85431 1.41612 1.06265 1.53118 1.05500 1.22062 0.99913 1.08628 0.82835 1.20971 0.92120 1.09598 0.99242 1.20960 0.98707 1.09365 0.92728 1.21896 0.83072 1.09928 0.99238 1.21886 1.01236 1.07124 0.91996 1.23042 0.90467 0.93866 0.97431 1.68947 1.07411 1.09676 1.26790 0.92812 0.93122 0.93645 0.93130 0.92300 0.86301 0.92853 0.91952 0.83667 0.81543 0.84204 0.84287 0.81857 0.84843 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -2.00 16 2 C -0.13 -2.73 6.22 -26.73 -0.17 -2.89 16 3 C 0.11 2.54 4.88 -4.04 -0.02 2.52 16 4 N -0.40 -10.22 2.51 -115.84 -0.29 -10.51 16 5 C -0.30 -7.45 7.47 -15.02 -0.11 -7.56 16 6 H 0.11 2.77 5.96 -52.49 -0.31 2.46 16 7 C 0.04 1.01 5.35 -17.45 -0.09 0.91 16 8 N -0.87 -22.79 10.98 55.50 0.61 -22.18 16 9 Si 0.93 19.52 29.55 -169.99 -5.02 14.50 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 C 0.50 12.56 7.57 -12.25 -0.09 12.47 16 14 O -0.60 -15.91 15.98 5.31 0.08 -15.82 16 15 C 0.15 3.17 6.66 -83.06 -0.55 2.62 16 16 C -0.15 -2.87 9.04 -38.84 -0.35 -3.22 16 17 C 0.16 2.64 6.65 -83.39 -0.55 2.08 16 18 N -0.39 -5.77 2.97 -60.74 -0.18 -5.95 16 19 C -0.01 -0.10 10.77 -16.63 -0.18 -0.28 16 20 C -0.20 -2.41 10.86 -39.76 -0.43 -2.85 16 21 C -0.19 -2.28 10.86 -39.76 -0.43 -2.71 16 22 C -0.01 -0.18 10.77 -16.63 -0.18 -0.36 16 23 C -0.20 -2.88 9.53 -39.15 -0.37 -3.25 16 24 C 0.11 1.79 11.17 -17.62 -0.20 1.59 16 25 N -0.42 -8.59 6.36 -9.88 -0.06 -8.66 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.12 2.98 5.51 -51.93 -0.29 2.70 16 32 H 0.05 1.32 7.53 -51.93 -0.39 0.93 16 33 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.15 2.68 6.43 -52.49 -0.34 2.34 16 35 H 0.17 2.12 7.09 -52.48 -0.37 1.75 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.16 1.57 7.08 -52.48 -0.37 1.20 16 39 H 0.13 1.46 6.83 -52.49 -0.36 1.10 16 40 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -29.67 337.00 -8.10 -37.76 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.95 Total: 8.71 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -3.37 Total: -2.93 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.08 Total: -47.29 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.08 Total: -15.82 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.67 -8.10 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288114779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.833 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds