Wall clock time and date at job start Fri Apr 10 2020 20:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36448 * 124.85143 * 2 1 4 4 C 1.34485 * 108.85408 * 179.97438 * 3 2 1 5 5 C 1.46683 * 106.33699 * 0.02562 * 4 3 2 6 6 C 1.47261 * 126.94818 * 179.97438 * 5 4 3 7 7 O 1.21620 * 120.00441 * 187.65371 * 6 5 4 8 8 N 1.34781 * 119.99500 * 7.64636 * 6 5 4 9 9 C 1.46500 * 120.00159 * 5.98348 * 8 6 5 10 10 C 1.50694 * 109.47098 * 271.30646 * 9 8 6 11 11 H 1.07997 * 119.99901 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99996 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00155 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99925 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46809 * 90.00140 * 14 12 10 16 16 H 1.48502 * 109.46931 * 210.00301 * 14 12 10 17 17 H 1.48497 * 109.47029 * 330.00441 * 14 12 10 18 18 C 1.46501 * 119.99674 * 185.97851 * 8 6 5 19 19 C 1.50702 * 109.47484 * 270.00088 * 18 8 6 20 20 C 1.38230 * 119.61537 * 94.97786 * 19 18 8 21 21 C 1.38622 * 119.15979 * 179.79119 * 20 19 18 22 22 C 1.38673 * 118.41873 * 0.47471 * 21 20 19 23 23 C 1.38176 * 119.16397 * 359.51080 * 22 21 20 24 24 N 1.31853 * 119.62004 * 275.00457 * 19 18 8 25 25 C 1.34663 * 124.84859 * 180.26130 * 2 1 3 26 26 H 1.09002 * 109.47369 * 90.02109 * 1 2 3 27 27 H 1.09001 * 109.47588 * 210.02785 * 1 2 3 28 28 H 1.09004 * 109.47255 * 330.02087 * 1 2 3 29 29 H 1.07997 * 125.57192 * 359.95713 * 3 2 1 30 30 H 1.08002 * 126.83254 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46951 * 31.30793 * 9 8 6 32 32 H 1.09005 * 109.47022 * 151.30048 * 9 8 6 33 33 H 0.97002 * 120.00014 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.46967 * 150.00414 * 18 8 6 35 35 H 1.09003 * 109.47337 * 30.01048 * 18 8 6 36 36 H 1.08006 * 120.41944 * 0.02562 * 20 19 18 37 37 H 1.08003 * 120.78937 * 180.23590 * 21 20 19 38 38 H 1.08005 * 120.41458 * 179.77422 * 22 21 20 39 39 H 1.08003 * 119.61516 * 180.25064 * 23 22 21 40 40 H 1.07996 * 125.80307 * 0.06485 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5462 -0.7177 0.0003 6 6 4.7283 -1.5959 0.0002 7 8 4.5940 -2.7965 -0.1403 8 7 5.9591 -1.0690 0.1557 9 6 6.1131 0.3567 0.4554 10 6 6.1867 1.1356 -0.8326 11 1 6.1253 0.6201 -1.7796 12 6 6.3334 2.5062 -0.8019 13 7 6.3982 3.1859 -1.9259 14 14 6.4403 3.3977 0.8362 15 1 7.8607 3.4851 1.2604 16 1 5.8815 4.7660 0.6925 17 1 5.6637 2.6506 1.8579 18 6 7.1428 -1.9222 0.0251 19 6 7.4957 -2.5013 1.3709 20 6 7.0326 -3.7568 1.7171 21 6 7.3665 -4.2822 2.9556 22 6 8.1492 -3.5175 3.8076 23 6 8.5756 -2.2705 3.3925 24 7 8.2423 -1.8043 2.2047 25 6 2.2344 -1.1051 -0.0050 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3634 -0.8897 0.5143 28 1 -0.3634 0.8902 0.5135 29 1 1.8828 2.1373 -0.0007 30 1 4.3981 1.4016 0.0011 31 1 5.2588 0.6996 1.0391 32 1 7.0287 0.5111 1.0263 33 1 6.5010 4.1503 -1.9043 34 1 7.9789 -1.3293 -0.3458 35 1 6.9324 -2.7310 -0.6747 36 1 6.4213 -4.3229 1.0297 37 1 7.0221 -5.2621 3.2516 38 1 8.4254 -3.8938 4.7815 39 1 9.1888 -1.6704 4.0486 40 1 1.8766 -2.1241 -0.0107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268564773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:19 Heat of formation + Delta-G solvation = 81.039291 kcal Electronic energy + Delta-G solvation = -24167.445974 eV Core-core repulsion = 20756.493708 eV Total energy + Delta-G solvation = -3410.952266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66537 -39.94801 -38.34544 -35.15469 -33.09825 -32.18991 -32.15067 -31.27022 -28.62912 -28.22581 -26.74337 -25.52689 -23.27950 -22.57141 -22.11704 -20.71244 -19.66459 -18.28078 -17.02041 -16.67230 -16.52113 -15.98318 -15.36810 -15.25922 -15.08958 -14.96267 -14.27412 -13.81157 -13.53337 -13.44192 -13.05516 -12.90169 -12.67904 -12.63356 -12.45841 -12.19485 -11.88647 -11.60166 -11.50687 -11.36243 -10.85169 -10.74263 -10.22802 -10.04086 -9.67001 -9.55428 -9.21866 -9.09745 -8.70798 -8.64959 -7.91201 -7.77487 -7.52256 -6.14889 -4.11574 1.32023 1.52606 2.41103 3.19207 3.25851 3.30976 3.32369 3.36186 3.85840 4.31872 4.33065 4.37925 4.65030 4.89847 4.98926 5.06330 5.16749 5.22225 5.27085 5.37008 5.40939 5.43659 5.59288 5.71750 5.81156 5.99851 6.07852 6.27598 6.29039 6.37915 6.43988 6.63657 6.68628 6.90949 6.95897 7.04495 7.46234 7.53841 7.56108 7.75749 7.84989 8.24957 8.32659 8.54337 8.93969 9.14063 9.42706 10.97335 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.006586 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.604318 B = 4250.506458 C = 5976.617890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.454 5.454 3 C -0.056 4.056 4 C -0.144 4.144 5 C -0.224 4.224 6 C 0.595 3.405 7 O -0.583 6.583 8 N -0.578 5.578 9 C 0.194 3.806 10 C -0.525 4.525 11 H 0.081 0.919 12 C 0.075 3.925 13 N -0.888 5.888 14 Si 0.858 3.142 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.260 1.260 18 C 0.169 3.831 19 C 0.121 3.879 20 C -0.148 4.148 21 C -0.084 4.084 22 C -0.182 4.182 23 C 0.092 3.908 24 N -0.469 5.469 25 C 0.054 3.946 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.158 0.842 30 H 0.199 0.801 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.151 0.849 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -8.788 9.044 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.131 5.131 3 C -0.180 4.180 4 C -0.167 4.167 5 C -0.235 4.235 6 C 0.387 3.613 7 O -0.467 6.467 8 N -0.307 5.307 9 C 0.073 3.927 10 C -0.563 4.563 11 H 0.099 0.901 12 C -0.128 4.128 13 N -0.525 5.525 14 Si 0.685 3.315 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.184 1.184 18 C 0.045 3.955 19 C -0.018 4.018 20 C -0.168 4.168 21 C -0.110 4.110 22 C -0.202 4.202 23 C -0.065 4.065 24 N -0.178 5.178 25 C -0.081 4.081 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.175 0.825 30 H 0.215 0.785 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.168 0.832 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.520 -8.301 8.625 13.182 hybrid contribution -0.286 -0.111 1.066 1.109 sum -5.805 -8.412 9.691 14.085 Atomic orbital electron populations 1.21962 0.78243 1.03772 1.02832 1.43546 1.05912 1.06161 1.57514 1.21878 0.91057 0.90617 1.14475 1.24109 0.97468 0.94403 1.00675 1.20309 0.91805 0.94186 1.17167 1.17411 0.82639 0.86253 0.74991 1.90617 1.86730 1.15452 1.53872 1.47576 1.03695 1.10523 1.68873 1.20397 0.98385 0.76640 0.97302 1.21371 1.49919 0.91841 0.93178 0.90090 1.24845 0.94663 0.97258 0.96041 1.69888 1.49081 1.07634 1.25944 0.87123 0.79596 0.79781 0.85049 1.19630 1.20851 1.18414 1.20162 0.89623 0.95252 0.90468 1.21937 0.92150 0.90793 0.96900 1.22153 0.99994 0.97084 0.97576 1.21550 0.96075 0.99641 0.93737 1.22067 1.00685 0.96672 1.00820 1.22730 0.97312 0.93527 0.92958 1.67571 1.11636 1.35220 1.03404 1.21550 0.90128 0.91086 1.05306 0.91331 0.90354 0.90172 0.82454 0.78508 0.93245 0.94673 0.92416 0.88415 0.89158 0.84213 0.85309 0.85379 0.83160 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 11.03 59.84 0.66 1.40 16 2 N -0.45 -7.13 3.09 -124.53 -0.38 -7.52 16 3 C -0.06 -1.01 11.34 -16.82 -0.19 -1.20 16 4 C -0.14 -3.13 8.27 -37.50 -0.31 -3.44 16 5 C -0.22 -4.81 6.04 -103.35 -0.62 -5.43 16 6 C 0.60 13.43 7.64 -12.59 -0.10 13.34 16 7 O -0.58 -13.33 16.24 5.26 0.09 -13.24 16 8 N -0.58 -12.85 2.44 -177.77 -0.43 -13.28 16 9 C 0.19 4.59 3.75 -5.20 -0.02 4.57 16 10 C -0.52 -13.96 7.68 -34.44 -0.26 -14.22 16 11 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 12 C 0.08 2.03 4.98 -17.82 -0.09 1.94 16 13 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 14 Si 0.86 20.06 26.78 -169.99 -4.55 15.50 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.26 -5.81 6.54 56.52 0.37 -5.45 16 18 C 0.17 3.32 5.66 -5.19 -0.03 3.29 16 19 C 0.12 2.20 6.36 -82.58 -0.53 1.67 16 20 C -0.15 -2.36 9.68 -39.44 -0.38 -2.74 16 21 C -0.08 -1.11 10.18 -39.28 -0.40 -1.51 16 22 C -0.18 -2.27 10.11 -39.44 -0.40 -2.67 16 23 C 0.09 1.34 11.18 -17.55 -0.20 1.14 16 24 N -0.47 -8.50 10.27 -9.47 -0.10 -8.59 16 25 C 0.05 0.97 11.13 -16.84 -0.19 0.78 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.20 4.73 2.38 -52.49 -0.12 4.61 16 31 H 0.05 1.19 4.01 -51.93 -0.21 0.98 16 32 H 0.04 0.85 7.49 -51.93 -0.39 0.46 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.10 1.93 8.07 -51.93 -0.42 1.51 16 35 H 0.09 1.68 7.41 -51.93 -0.38 1.29 16 36 H 0.14 2.22 7.78 -52.48 -0.41 1.81 16 37 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -32.80 336.78 -7.49 -40.29 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -4.90 Total: 9.70 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.05 Total: -3.08 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.14 Total: -54.25 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.55 Total: 15.50 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.80 -7.49 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268564773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.327 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds