Wall clock time and date at job start Fri Apr 10 2020 20:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36448 * 124.85143 * 2 1 4 4 C 1.34485 * 108.85408 * 179.97438 * 3 2 1 5 5 C 1.46683 * 106.33699 * 0.02562 * 4 3 2 6 6 C 1.47261 * 126.94818 * 179.97438 * 5 4 3 7 7 O 1.21620 * 120.00441 * 187.65371 * 6 5 4 8 8 N 1.34781 * 119.99500 * 7.64636 * 6 5 4 9 9 C 1.46500 * 120.00159 * 5.98348 * 8 6 5 10 10 C 1.50694 * 109.47098 * 271.30646 * 9 8 6 11 11 H 1.07997 * 119.99901 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99996 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00155 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99925 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46809 * 90.00140 * 14 12 10 16 16 H 1.48502 * 109.46931 * 210.00301 * 14 12 10 17 17 H 1.48497 * 109.47029 * 330.00441 * 14 12 10 18 18 C 1.46501 * 119.99674 * 185.97851 * 8 6 5 19 19 C 1.50702 * 109.47484 * 270.00088 * 18 8 6 20 20 C 1.38230 * 119.61537 * 94.97786 * 19 18 8 21 21 C 1.38622 * 119.15979 * 179.79119 * 20 19 18 22 22 C 1.38673 * 118.41873 * 0.47471 * 21 20 19 23 23 C 1.38176 * 119.16397 * 359.51080 * 22 21 20 24 24 N 1.31853 * 119.62004 * 275.00457 * 19 18 8 25 25 C 1.34663 * 124.84859 * 180.26130 * 2 1 3 26 26 H 1.09002 * 109.47369 * 90.02109 * 1 2 3 27 27 H 1.09001 * 109.47588 * 210.02785 * 1 2 3 28 28 H 1.09004 * 109.47255 * 330.02087 * 1 2 3 29 29 H 1.07997 * 125.57192 * 359.95713 * 3 2 1 30 30 H 1.08002 * 126.83254 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46951 * 31.30793 * 9 8 6 32 32 H 1.09005 * 109.47022 * 151.30048 * 9 8 6 33 33 H 0.97002 * 120.00014 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.46967 * 150.00414 * 18 8 6 35 35 H 1.09003 * 109.47337 * 30.01048 * 18 8 6 36 36 H 1.08006 * 120.41944 * 0.02562 * 20 19 18 37 37 H 1.08003 * 120.78937 * 180.23590 * 21 20 19 38 38 H 1.08005 * 120.41458 * 179.77422 * 22 21 20 39 39 H 1.08003 * 119.61516 * 180.25064 * 23 22 21 40 40 H 1.07996 * 125.80307 * 0.06485 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5462 -0.7177 0.0003 6 6 4.7283 -1.5959 0.0002 7 8 4.5940 -2.7965 -0.1403 8 7 5.9591 -1.0690 0.1557 9 6 6.1131 0.3567 0.4554 10 6 6.1867 1.1356 -0.8326 11 1 6.1253 0.6201 -1.7796 12 6 6.3334 2.5062 -0.8019 13 7 6.3982 3.1859 -1.9259 14 14 6.4403 3.3977 0.8362 15 1 7.8607 3.4851 1.2604 16 1 5.8815 4.7660 0.6925 17 1 5.6637 2.6506 1.8579 18 6 7.1428 -1.9222 0.0251 19 6 7.4957 -2.5013 1.3709 20 6 7.0326 -3.7568 1.7171 21 6 7.3665 -4.2822 2.9556 22 6 8.1492 -3.5175 3.8076 23 6 8.5756 -2.2705 3.3925 24 7 8.2423 -1.8043 2.2047 25 6 2.2344 -1.1051 -0.0050 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3634 -0.8897 0.5143 28 1 -0.3634 0.8902 0.5135 29 1 1.8828 2.1373 -0.0007 30 1 4.3981 1.4016 0.0011 31 1 5.2588 0.6996 1.0391 32 1 7.0287 0.5111 1.0263 33 1 6.5010 4.1503 -1.9043 34 1 7.9789 -1.3293 -0.3458 35 1 6.9324 -2.7310 -0.6747 36 1 6.4213 -4.3229 1.0297 37 1 7.0221 -5.2621 3.2516 38 1 8.4254 -3.8938 4.7815 39 1 9.1888 -1.6704 4.0486 40 1 1.8766 -2.1241 -0.0107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268564773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:44:18 Heat of formation + Delta-G solvation = 60.327211 kcal Electronic energy + Delta-G solvation = -24168.344117 eV Core-core repulsion = 20756.493708 eV Total energy + Delta-G solvation = -3411.850409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.09037 -41.18356 -39.92612 -36.92632 -34.82393 -33.74330 -33.31358 -32.57856 -30.28104 -29.80374 -28.18641 -26.76425 -24.64397 -24.24301 -23.46586 -22.20036 -21.07661 -19.83013 -19.06341 -18.10759 -17.77136 -17.35380 -16.84741 -16.71049 -16.47780 -16.14825 -15.96210 -15.31826 -15.01744 -14.82830 -14.61360 -14.27192 -14.16884 -13.97959 -13.91339 -13.29858 -13.14525 -13.10035 -12.95235 -12.73577 -12.61885 -12.48237 -12.04439 -11.79912 -11.66602 -10.86559 -10.77845 -10.73658 -10.38260 -9.92986 -9.51618 -9.26960 -9.07352 -8.26823 -6.27835 0.15721 0.41427 0.90910 1.37587 1.39996 1.49807 1.69004 2.08620 2.34112 2.42543 2.70254 3.03316 3.07111 3.40368 3.81027 4.01753 4.05837 4.14541 4.17350 4.22296 4.28004 4.36246 4.51559 4.59290 4.60149 4.75558 4.77003 4.77814 4.85804 4.91183 4.95956 5.25399 5.27066 5.29788 5.39889 5.52073 5.75042 5.83878 6.02051 6.23893 6.27453 6.52952 6.66627 6.75504 7.12643 7.27914 7.44590 8.89449 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.006586 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.604318 B = 4250.506458 C = 5976.617890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.441 5.441 3 C -0.041 4.041 4 C -0.191 4.191 5 C -0.271 4.271 6 C 0.586 3.414 7 O -0.596 6.596 8 N -0.585 5.585 9 C 0.214 3.786 10 C -0.516 4.516 11 H 0.031 0.969 12 C 0.030 3.970 13 N -0.934 5.934 14 Si 0.923 3.077 15 H -0.269 1.269 16 H -0.273 1.273 17 H -0.245 1.245 18 C 0.169 3.831 19 C 0.096 3.904 20 C -0.159 4.159 21 C -0.079 4.079 22 C -0.164 4.164 23 C 0.080 3.920 24 N -0.507 5.507 25 C 0.072 3.928 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.186 0.814 30 H 0.171 0.829 31 H 0.054 0.946 32 H 0.029 0.971 33 H 0.269 0.731 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 -9.614 12.196 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.117 5.117 3 C -0.167 4.167 4 C -0.214 4.214 5 C -0.281 4.281 6 C 0.379 3.621 7 O -0.481 6.481 8 N -0.314 5.314 9 C 0.092 3.908 10 C -0.555 4.555 11 H 0.050 0.950 12 C -0.169 4.169 13 N -0.574 5.574 14 Si 0.745 3.255 15 H -0.194 1.194 16 H -0.198 1.198 17 H -0.168 1.168 18 C 0.045 3.955 19 C -0.042 4.042 20 C -0.179 4.179 21 C -0.104 4.104 22 C -0.183 4.183 23 C -0.078 4.078 24 N -0.217 5.217 25 C -0.066 4.066 26 H 0.102 0.898 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.203 0.797 30 H 0.187 0.813 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.183 0.817 38 H 0.191 0.809 39 H 0.195 0.805 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.396 -9.143 11.776 16.642 hybrid contribution 0.223 0.058 0.062 0.238 sum -7.173 -9.085 11.838 16.557 Atomic orbital electron populations 1.22418 0.74188 1.06304 1.04643 1.43869 1.08192 1.04717 1.54885 1.22145 0.90226 0.92339 1.11948 1.23845 0.98588 0.94540 1.04398 1.20469 0.92937 0.94199 1.20537 1.17760 0.83115 0.86513 0.74735 1.90573 1.86961 1.15778 1.54789 1.47613 1.04624 1.10122 1.69010 1.20056 0.97910 0.77377 0.95462 1.21288 1.49556 0.92205 0.92440 0.95033 1.25549 0.94033 0.97788 0.99569 1.70024 1.50805 1.08108 1.28460 0.86101 0.79750 0.78803 0.80808 1.19413 1.19806 1.16840 1.20141 0.88306 0.94623 0.92441 1.21545 0.94271 0.92020 0.96317 1.22146 1.00333 0.96367 0.99080 1.21981 0.95178 1.01021 0.92258 1.22525 0.98466 0.95233 1.02102 1.23305 0.97429 0.94977 0.92044 1.67462 1.12648 1.36521 1.05073 1.21859 0.89128 0.92627 1.02973 0.89804 0.87813 0.87853 0.79658 0.81261 0.92886 0.95253 0.92168 0.90056 0.89268 0.84954 0.81689 0.80940 0.80521 0.79315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 11.03 127.77 1.41 2.41 16 2 N -0.44 -12.68 3.09 -547.90 -1.69 -14.37 16 3 C -0.04 -1.41 11.34 83.12 0.94 -0.46 16 4 C -0.19 -8.43 8.27 23.62 0.20 -8.24 16 5 C -0.27 -11.84 6.04 -19.04 -0.12 -11.95 16 6 C 0.59 27.56 7.64 86.61 0.66 28.22 16 7 O -0.60 -28.12 16.24 -4.09 -0.07 -28.19 16 8 N -0.59 -27.58 2.44 -834.57 -2.04 -29.62 16 9 C 0.21 10.63 3.75 85.63 0.32 10.95 16 10 C -0.52 -29.23 7.68 25.60 0.20 -29.04 16 11 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 12 C 0.03 1.68 4.98 84.66 0.42 2.10 16 13 N -0.93 -56.26 13.96 21.45 0.30 -55.96 16 14 Si 0.92 42.23 26.78 68.60 1.84 44.07 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 18 C 0.17 7.13 5.66 85.63 0.49 7.61 16 19 C 0.10 3.60 6.36 42.55 0.27 3.88 16 20 C -0.16 -5.05 9.68 22.36 0.22 -4.83 16 21 C -0.08 -1.85 10.18 22.47 0.23 -1.63 16 22 C -0.16 -3.49 10.11 22.36 0.23 -3.26 16 23 C 0.08 2.16 11.18 84.67 0.95 3.11 16 24 N -0.51 -18.53 10.27 -183.89 -1.89 -20.42 16 25 C 0.07 2.45 11.13 83.92 0.93 3.38 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.10 1.20 8.13 -2.38 -0.02 1.19 16 29 H 0.19 5.20 8.06 -2.91 -0.02 5.17 16 30 H 0.17 8.42 2.38 -2.91 -0.01 8.42 16 31 H 0.05 2.64 4.01 -2.39 -0.01 2.64 16 32 H 0.03 1.48 7.49 -2.38 -0.02 1.46 16 33 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.08 3.56 8.07 -2.39 -0.02 3.54 16 35 H 0.09 3.64 7.41 -2.39 -0.02 3.62 16 36 H 0.13 4.30 7.78 -2.91 -0.02 4.28 16 37 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 39 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.19 5.39 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -77.00 336.78 4.80 -72.20 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 1.00 Total: 30.02 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 7.34 Total: 2.26 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.32 Total: -120.36 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.07 Total: -28.19 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.84 Total: 44.07 kcal Total: -77.00 4.80 -72.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268564773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.530 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds