Wall clock time and date at job start Fri Apr 10 2020 20:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99768 * 2 1 4 4 C 1.50700 * 109.47214 * 270.27083 * 3 2 1 5 5 C 1.35315 * 126.12284 * 94.69058 * 4 3 2 6 6 C 1.39874 * 107.91812 * 179.90328 * 5 4 3 7 7 N 1.30838 * 108.20121 * 0.36911 * 6 5 4 8 8 N 1.34947 * 126.12705 * 275.00443 * 4 3 2 9 9 C 1.46499 * 126.04030 * 359.94272 * 8 4 3 10 10 C 1.34773 * 119.99882 * 180.27410 * 2 1 3 11 11 O 1.21545 * 120.00083 * 174.92371 * 10 2 1 12 12 C 1.47892 * 120.00067 * 354.92572 * 10 2 1 13 13 C 1.39916 * 120.02507 * 330.21216 * 12 10 2 14 14 C 1.38326 * 120.36054 * 179.78697 * 13 12 10 15 15 C 1.37759 * 120.41023 * 0.46485 * 14 13 12 16 16 C 1.40751 * 120.03637 * 359.79560 * 15 14 13 17 17 C 1.41436 * 120.17581 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00321 * 151.80080 * 17 16 15 19 19 C 1.39941 * 119.99890 * 331.80456 * 17 16 15 20 20 N 1.30833 * 119.99771 * 163.76803 * 19 17 16 21 21 Si 1.86798 * 119.99865 * 343.76319 * 19 17 16 22 22 H 1.48504 * 109.47140 * 94.23016 * 21 19 17 23 23 H 1.48498 * 109.47114 * 214.22758 * 21 19 17 24 24 H 1.48495 * 109.47377 * 334.22749 * 21 19 17 25 25 C 1.38992 * 120.02197 * 150.48701 * 12 10 2 26 26 H 1.09000 * 109.47361 * 271.75973 * 1 2 3 27 27 H 1.09003 * 109.47345 * 31.76333 * 1 2 3 28 28 H 1.09000 * 109.47201 * 151.75678 * 1 2 3 29 29 H 1.08998 * 109.47262 * 30.27516 * 3 2 1 30 30 H 1.09004 * 109.46550 * 150.27149 * 3 2 1 31 31 H 1.07999 * 126.04065 * 0.03761 * 5 4 3 32 32 H 1.08003 * 125.89737 * 180.14267 * 6 5 4 33 33 H 1.08997 * 109.47205 * 89.99654 * 9 8 4 34 34 H 1.09000 * 109.47210 * 210.00711 * 9 8 4 35 35 H 1.09008 * 109.46599 * 330.00183 * 9 8 4 36 36 H 1.08006 * 119.82233 * 359.97438 * 13 12 10 37 37 H 1.07998 * 119.79610 * 180.23558 * 14 13 12 38 38 H 1.07997 * 119.98297 * 179.76458 * 15 14 13 39 39 H 0.97001 * 119.99756 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.20634 * 359.95876 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4428 1.7072 -1.4208 5 6 1.6715 2.5568 -2.1379 6 6 2.2493 2.6982 -3.4039 7 7 3.3244 1.9538 -3.4479 8 7 3.4677 1.3182 -2.2077 9 6 4.5410 0.3948 -1.8315 10 6 2.1389 -1.1672 -0.0056 11 8 3.3507 -1.1688 -0.0987 12 6 1.4037 -2.4460 0.1016 13 6 0.1931 -2.5011 0.8009 14 6 -0.5024 -3.6925 0.9017 15 6 -0.0069 -4.8404 0.3232 16 6 1.2121 -4.8055 -0.3796 17 6 1.7238 -5.9823 -0.9742 18 1 2.3539 -5.9154 -1.8489 19 6 1.4138 -7.2334 -0.4293 20 7 1.6066 -8.3194 -1.1330 21 14 0.7248 -7.3528 1.3029 22 1 -0.7587 -7.3876 1.2443 23 1 1.2238 -8.5929 1.9497 24 1 1.1615 -6.1729 2.0918 25 6 1.9178 -3.5951 -0.4875 26 1 -0.3634 0.0316 1.0272 27 1 -0.3634 0.8738 -0.5410 28 1 -0.3633 -0.9053 -0.4863 29 1 1.6105 2.0271 0.5181 30 1 3.1520 1.1371 0.5096 31 1 0.7703 3.0418 -1.7930 32 1 1.8711 3.3126 -4.2075 33 1 4.2460 -0.6251 -2.0782 34 1 5.4494 0.6522 -2.3762 35 1 4.7262 0.4703 -0.7599 36 1 -0.2020 -1.6079 1.2620 37 1 -1.4379 -3.7239 1.4405 38 1 -0.5537 -5.7677 0.4095 39 1 1.3913 -9.1865 -0.7554 40 1 2.8538 -3.5580 -1.0250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349237694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:45:03 Heat of formation + Delta-G solvation = 80.341348 kcal Electronic energy + Delta-G solvation = -23885.366637 eV Core-core repulsion = 20474.384106 eV Total energy + Delta-G solvation = -3410.982531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26109 -39.71284 -37.44276 -35.58340 -33.80193 -33.10995 -31.63356 -30.38160 -29.97941 -27.47257 -26.51903 -26.00436 -25.17280 -22.53225 -21.11889 -20.79187 -20.08961 -19.30645 -17.63442 -16.79322 -16.37184 -16.20266 -15.79556 -15.18627 -15.00687 -14.67377 -14.24847 -13.83310 -13.75210 -13.50366 -13.05123 -12.90926 -12.78823 -12.72005 -12.49401 -12.36153 -12.11245 -12.07472 -11.84197 -11.24403 -11.11952 -10.84455 -10.62835 -10.55135 -9.98315 -9.77911 -9.59472 -9.31715 -9.10237 -8.66181 -8.49015 -7.92634 -7.79253 -7.05308 -4.60953 1.81312 1.88107 2.46320 2.63714 2.78303 3.00928 3.14093 3.21442 3.31006 3.42289 3.88058 4.38255 4.58369 4.67564 4.75430 5.18277 5.21718 5.27118 5.28455 5.38195 5.51280 5.56081 5.67695 5.76551 5.84076 5.90230 5.92096 6.04460 6.10092 6.28926 6.52190 6.58161 6.64930 6.68894 6.92011 7.06013 7.14909 7.30865 7.44134 7.51509 7.68715 7.77781 7.89096 8.21680 8.44909 8.48268 8.65459 9.96754 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.003909 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.278856 B = 7160.748219 C = 7725.794888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.179 3.821 4 C 0.069 3.931 5 C -0.270 4.270 6 C 0.037 3.963 7 N -0.300 5.300 8 N -0.352 5.352 9 C 0.106 3.894 10 C 0.567 3.433 11 O -0.545 6.545 12 C -0.105 4.105 13 C -0.227 4.227 14 C -0.083 4.083 15 C -0.225 4.225 16 C 0.083 3.917 17 C -0.440 4.440 18 H 0.092 0.908 19 C 0.082 3.918 20 N -0.804 5.804 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.291 1.291 24 H -0.243 1.243 25 C -0.141 4.141 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.180 0.820 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.287 0.713 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 16.558 3.294 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C 0.054 3.946 4 C -0.062 4.062 5 C -0.300 4.300 6 C -0.147 4.147 7 N -0.122 5.122 8 N -0.134 5.134 9 C -0.035 4.035 10 C 0.359 3.641 11 O -0.424 6.424 12 C -0.108 4.108 13 C -0.247 4.247 14 C -0.101 4.101 15 C -0.244 4.244 16 C 0.080 3.920 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.137 4.137 20 N -0.427 5.427 21 Si 0.742 3.258 22 H -0.196 1.196 23 H -0.218 1.218 24 H -0.166 1.166 25 C -0.161 4.161 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.162 0.838 32 H 0.197 0.803 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.121 15.757 2.492 15.992 hybrid contribution -1.155 -0.028 1.051 1.562 sum -2.276 15.729 3.543 16.283 Atomic orbital electron populations 1.22255 0.78859 1.03972 1.01478 1.47739 1.07381 1.04735 1.74754 1.19883 0.98999 0.86266 0.89469 1.21534 0.90794 0.98098 0.95757 1.21199 1.04745 1.08701 0.95374 1.23760 0.93890 0.99082 0.97999 1.77349 1.21025 1.12745 1.01089 1.48608 1.20798 1.35079 1.08912 1.22065 0.87361 0.92074 1.01962 1.18988 0.87044 0.83835 0.74208 1.90642 1.14197 1.87451 1.50085 1.19310 0.96259 0.91750 1.03474 1.20886 0.97155 0.98088 1.08569 1.20528 0.98210 0.92952 0.98438 1.21168 0.98034 0.97440 1.07793 1.17669 0.90647 0.93070 0.90620 1.19540 1.26599 0.88694 1.11972 0.88954 1.26190 0.92286 0.95116 1.00156 1.69675 1.35789 0.99772 1.37476 0.86274 0.79019 0.78404 0.82141 1.19613 1.21821 1.16606 1.21138 0.99283 0.91601 1.04066 0.92257 0.91907 0.88883 0.87963 0.88872 0.83814 0.80295 0.89742 0.90489 0.88581 0.87013 0.88264 0.87981 0.90234 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 8.75 59.85 0.52 1.40 16 2 N -0.61 -8.59 2.86 -184.06 -0.53 -9.11 16 3 C 0.18 2.09 5.57 -5.19 -0.03 2.06 16 4 C 0.07 0.92 6.51 -82.26 -0.54 0.38 16 5 C -0.27 -3.25 10.72 -40.01 -0.43 -3.68 16 6 C 0.04 0.48 12.03 -17.36 -0.21 0.27 16 7 N -0.30 -4.70 12.58 30.63 0.39 -4.31 16 8 N -0.35 -5.37 4.01 -63.88 -0.26 -5.62 16 9 C 0.11 1.51 9.60 59.85 0.57 2.09 16 10 C 0.57 10.27 7.43 -12.31 -0.09 10.17 16 11 O -0.55 -10.59 12.09 5.33 0.06 -10.52 16 12 C -0.10 -2.13 5.33 -105.04 -0.56 -2.69 16 13 C -0.23 -4.17 7.58 -38.92 -0.30 -4.47 16 14 C -0.08 -1.63 10.01 -39.72 -0.40 -2.02 16 15 C -0.22 -5.11 7.08 -38.81 -0.27 -5.39 16 16 C 0.08 2.04 5.17 -106.87 -0.55 1.49 16 17 C -0.44 -11.65 9.59 -37.73 -0.36 -12.02 16 18 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 19 C 0.08 2.10 5.44 -17.34 -0.09 2.00 16 20 N -0.80 -20.98 13.93 55.55 0.77 -20.20 16 21 Si 0.91 20.17 24.41 -169.99 -4.15 16.02 16 22 H -0.27 -5.70 6.66 56.52 0.38 -5.32 16 23 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.24 -5.49 6.74 56.52 0.38 -5.11 16 25 C -0.14 -3.26 9.34 -38.44 -0.36 -3.62 16 26 H 0.06 0.58 6.84 -51.93 -0.36 0.22 16 27 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.09 1.26 5.69 -51.93 -0.30 0.96 16 29 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.09 1.13 6.59 -51.93 -0.34 0.79 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.18 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.08 1.39 7.06 -51.93 -0.37 1.02 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.31 6.07 -51.92 -0.32 0.99 16 36 H 0.11 1.67 4.83 -52.48 -0.25 1.42 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.10 2.31 4.32 -52.49 -0.23 2.09 16 39 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 40 H 0.11 2.58 7.91 -52.49 -0.42 2.16 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -29.80 324.65 -6.61 -36.41 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.70 Total: 6.45 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -3.09 Total: -14.00 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.38 Total: -39.25 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.06 Total: -10.52 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.15 Total: 16.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.80 -6.61 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349237694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.748 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds