Wall clock time and date at job start Fri Apr 10 2020 20:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 113.25703 * 2 1 4 4 C 1.53510 * 114.17242 * 226.78573 * 2 1 3 5 5 N 1.47477 * 87.93434 * 220.33113 * 4 2 1 6 6 C 1.46901 * 111.00075 * 138.70391 * 5 4 2 7 7 C 1.53000 * 109.46769 * 74.02853 * 6 5 4 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.47326 * 180.02562 * 8 7 6 10 10 C 1.76202 * 99.99960 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00077 * 0.02562 * 10 9 8 12 12 C 1.38802 * 120.00119 * 179.97438 * 10 9 8 13 13 N 1.31639 * 119.99646 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00410 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47079 * 59.99868 * 14 12 10 16 16 H 1.48496 * 109.47406 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46936 * 300.00612 * 14 12 10 18 18 C 1.47489 * 87.83425 * 27.01241 * 5 4 2 19 19 H 1.08995 * 113.47137 * 87.81661 * 18 5 4 20 20 C 1.52998 * 113.47496 * 218.22025 * 18 5 4 21 21 H 1.09001 * 110.27327 * 166.13354 * 20 18 5 22 22 C 1.54946 * 110.31035 * 288.32934 * 20 18 5 23 23 C 1.55313 * 100.94208 * 155.36014 * 22 20 18 24 24 C 1.54380 * 102.24963 * 325.86862 * 23 22 20 25 25 O 1.43240 * 107.59306 * 21.35506 * 24 23 22 26 26 H 1.08996 * 109.47500 * 287.05271 * 1 2 3 27 27 H 1.09006 * 109.46750 * 47.04950 * 1 2 3 28 28 H 1.08996 * 109.46918 * 167.04794 * 1 2 3 29 29 H 1.08994 * 109.47340 * 192.94275 * 3 2 1 30 30 H 1.08996 * 109.47123 * 312.94827 * 3 2 1 31 31 H 1.09002 * 109.47145 * 72.94938 * 3 2 1 32 32 H 1.09006 * 113.47064 * 105.56834 * 4 2 1 33 33 H 1.08995 * 113.47947 * 335.10335 * 4 2 1 34 34 H 1.09001 * 109.46874 * 314.03133 * 6 5 4 35 35 H 1.08992 * 109.47407 * 194.03150 * 6 5 4 36 36 H 1.09002 * 109.47398 * 300.00295 * 7 6 5 37 37 H 1.09001 * 109.47194 * 60.00475 * 7 6 5 38 38 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 39 39 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 40 40 H 0.96996 * 119.99820 * 179.97438 * 13 12 10 41 41 H 1.08994 * 111.12549 * 273.27965 * 22 20 18 42 42 H 1.08997 * 111.12524 * 37.44547 * 22 20 18 43 43 H 1.08997 * 110.84804 * 207.67570 * 23 22 20 44 44 H 1.08996 * 111.01961 * 84.13778 * 23 22 20 45 45 H 1.09010 * 109.82922 * 261.83902 * 24 23 22 46 46 H 1.09003 * 109.90614 * 140.91803 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1342 1.4057 0.0000 4 6 2.1586 -0.9590 -1.0207 5 7 3.1619 -1.3059 0.0031 6 6 3.4331 -2.7497 0.0064 7 6 4.2788 -3.1125 -1.2159 8 6 4.5608 -4.6162 -1.2128 9 16 5.5619 -5.0454 -2.6583 10 6 5.7316 -6.7813 -2.4085 11 1 5.2739 -7.2507 -1.5503 12 6 6.4527 -7.5458 -3.3153 13 7 7.0103 -6.9737 -4.3616 14 14 6.6321 -9.3862 -3.0510 15 1 5.2881 -10.0177 -3.0382 16 1 7.4424 -9.9677 -4.1511 17 1 7.3086 -9.6362 -1.7528 18 6 2.1585 -0.9542 1.0252 19 1 1.5097 -1.7856 1.3008 20 6 2.7515 -0.2386 2.2406 21 1 1.9585 0.2106 2.8385 22 6 3.5785 -1.2296 3.0977 23 6 4.5547 -0.2567 3.8137 24 6 4.7864 0.8256 2.7375 25 8 3.6883 0.7657 1.8197 26 1 -0.3634 0.3013 0.9824 27 1 -0.3633 0.7003 -0.7522 28 1 -0.3633 -1.0015 -0.2303 29 1 3.1977 1.3441 -0.2302 30 1 1.6343 2.0159 -0.7522 31 1 2.0008 1.8585 0.9825 32 1 2.5812 -0.4530 -1.8888 33 1 1.5091 -1.7912 -1.2919 34 1 2.4907 -3.2964 -0.0285 35 1 3.9740 -3.0157 0.9145 36 1 3.7378 -2.8464 -2.1240 37 1 5.2211 -2.5657 -1.1809 38 1 5.1015 -4.8826 -0.3046 39 1 3.6184 -5.1627 -1.2479 40 1 7.5145 -7.5078 -4.9951 41 1 2.9457 -1.7505 3.8162 42 1 4.1195 -1.9365 2.4686 43 1 5.4884 -0.7596 4.0655 44 1 4.0954 0.1733 4.7037 45 1 5.7201 0.6290 2.2104 46 1 4.8255 1.8102 3.2037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368055152.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:18 Heat of formation + Delta-G solvation = -29.367012 kcal Electronic energy + Delta-G solvation = -22848.611447 eV Core-core repulsion = 19671.855899 eV Total energy + Delta-G solvation = -3176.755547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16881 -38.67885 -34.68349 -32.42257 -32.29151 -31.51422 -30.16423 -27.43250 -26.77046 -25.52342 -25.31791 -22.95069 -21.82337 -21.23428 -20.61103 -18.34362 -17.44300 -17.08504 -16.14409 -15.63738 -15.42359 -14.97639 -14.78910 -14.52986 -14.01190 -13.99820 -13.47152 -13.28600 -13.17606 -12.91674 -12.58998 -12.45546 -12.18414 -12.04155 -11.88733 -11.68022 -11.54212 -11.36511 -11.27541 -11.05550 -10.95018 -10.86308 -10.84697 -10.60345 -10.38218 -10.29034 -9.87005 -9.54595 -9.37602 -9.03431 -8.74322 -8.27356 -6.50169 -6.20692 -3.90790 3.22506 3.23931 3.28616 3.57151 3.70786 3.96448 4.22753 4.25022 4.37507 4.54018 4.73545 4.81217 5.00206 5.07342 5.11571 5.14622 5.15300 5.20396 5.32239 5.36637 5.44477 5.48103 5.54022 5.55573 5.58029 5.61415 5.68413 5.76667 5.80752 5.82850 5.86267 5.89674 5.98786 6.05932 6.09560 6.14206 6.24082 6.28450 6.47414 6.60975 6.64908 6.80395 7.00967 7.23620 7.61742 8.38118 9.25190 10.87465 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.003012 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.868860 B = 9292.465628 C = 9926.896437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 C -0.108 4.108 4 C 0.004 3.996 5 N -0.444 5.444 6 C 0.023 3.977 7 C -0.090 4.090 8 C -0.112 4.112 9 S -0.131 6.131 10 C -0.517 4.517 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.028 3.972 19 H 0.084 0.916 20 C 0.103 3.897 21 H 0.068 0.932 22 C -0.154 4.154 23 C -0.154 4.154 24 C 0.047 3.953 25 O -0.350 6.350 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.268 0.732 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 16.194 14.928 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 C -0.165 4.165 4 C -0.124 4.124 5 N -0.166 5.166 6 C -0.107 4.107 7 C -0.128 4.128 8 C -0.261 4.261 9 S 0.097 5.903 10 C -0.665 4.665 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.082 4.082 19 H 0.101 0.899 20 C 0.045 3.955 21 H 0.086 0.914 22 C -0.191 4.191 23 C -0.192 4.192 24 C -0.029 4.029 25 O -0.269 6.269 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.294 17.220 13.737 24.315 hybrid contribution -0.998 -2.851 1.401 3.330 sum -11.292 14.369 15.138 23.731 Atomic orbital electron populations 1.21754 0.94200 1.01755 1.01800 1.22028 0.94450 0.96089 0.95817 1.21428 1.01748 0.92331 1.01015 1.23934 0.93752 0.97974 0.96774 1.68954 1.28616 1.16106 1.02942 1.22806 0.99196 0.88678 1.00013 1.21161 1.00315 0.94744 0.96605 1.23235 1.02427 0.97279 1.03161 1.84650 1.66248 1.10375 1.29037 1.22655 1.39065 0.91785 1.13044 0.91097 1.25012 0.94794 0.99418 0.94545 1.70018 1.32445 1.36230 1.11843 0.86231 0.78350 0.83008 0.77986 1.19965 1.20800 1.19951 1.23748 0.93590 0.97483 0.93378 0.89861 1.22629 0.91830 0.87833 0.93233 0.91402 1.23329 0.98207 0.98625 0.98973 1.23063 1.00488 0.97025 0.98579 1.23074 0.91498 0.97848 0.90514 1.88666 1.32767 1.56410 1.49048 0.92524 0.92201 0.92743 0.90371 0.93787 0.92112 0.89618 0.91517 0.94531 0.90895 0.91797 0.90864 0.92290 0.92485 0.92264 0.90589 0.89665 0.90324 0.91069 0.91463 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.29 37.16 0.35 -0.80 16 2 C -0.08 -0.84 1.43 -153.98 -0.22 -1.06 16 3 C -0.11 -1.12 7.50 37.16 0.28 -0.85 16 4 C 0.00 0.05 6.11 -7.55 -0.05 0.01 16 5 N -0.44 -5.70 5.66 -236.42 -1.34 -7.03 16 6 C 0.02 0.32 4.63 -3.82 -0.02 0.30 16 7 C -0.09 -1.54 5.32 -26.73 -0.14 -1.68 16 8 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 9 S -0.13 -3.52 21.44 -107.50 -2.30 -5.83 16 10 C -0.52 -15.09 9.50 30.94 0.29 -14.80 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 13 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 14 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.03 0.29 2.48 -71.43 -0.18 0.12 16 19 H 0.08 0.84 7.73 -51.93 -0.40 0.44 16 20 C 0.10 1.02 3.06 -25.71 -0.08 0.94 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.15 -1.43 6.56 -24.48 -0.16 -1.59 16 23 C -0.15 -1.27 7.02 -24.78 -0.17 -1.45 16 24 C 0.05 0.45 7.79 37.88 0.30 0.75 16 25 O -0.35 -3.96 6.92 -35.23 -0.24 -4.20 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 29 H 0.08 0.98 6.92 -51.93 -0.36 0.62 16 30 H 0.04 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.62 6.79 -51.93 -0.35 0.27 16 32 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 33 H 0.07 0.78 7.49 -51.93 -0.39 0.39 16 34 H 0.04 0.49 7.56 -51.93 -0.39 0.10 16 35 H 0.07 1.01 6.37 -51.93 -0.33 0.67 16 36 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 39 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.94 5.98 -51.93 -0.31 0.63 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -31.21 366.30 -10.73 -41.94 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.38 Total: -1.26 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 0.31 Total: -20.26 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: -0.60 Total: -32.65 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.24 Total: -4.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.21 -10.73 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368055152.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.574 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds