Wall clock time and date at job start Fri Apr 10 2020 20:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 113.25703 * 2 1 4 4 C 1.53510 * 114.17242 * 226.78573 * 2 1 3 5 5 N 1.47477 * 87.93434 * 220.33113 * 4 2 1 6 6 C 1.46901 * 111.00075 * 138.70391 * 5 4 2 7 7 C 1.53000 * 109.46769 * 74.02853 * 6 5 4 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.47326 * 180.02562 * 8 7 6 10 10 C 1.76202 * 99.99960 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00077 * 0.02562 * 10 9 8 12 12 C 1.38802 * 120.00119 * 179.97438 * 10 9 8 13 13 N 1.31639 * 119.99646 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00410 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47079 * 59.99868 * 14 12 10 16 16 H 1.48496 * 109.47406 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46936 * 300.00612 * 14 12 10 18 18 C 1.47489 * 87.83425 * 27.01241 * 5 4 2 19 19 H 1.08995 * 113.47137 * 87.81661 * 18 5 4 20 20 C 1.52998 * 113.47496 * 218.22025 * 18 5 4 21 21 H 1.09001 * 110.27327 * 166.13354 * 20 18 5 22 22 C 1.54946 * 110.31035 * 288.32934 * 20 18 5 23 23 C 1.55313 * 100.94208 * 155.36014 * 22 20 18 24 24 C 1.54380 * 102.24963 * 325.86862 * 23 22 20 25 25 O 1.43240 * 107.59306 * 21.35506 * 24 23 22 26 26 H 1.08996 * 109.47500 * 287.05271 * 1 2 3 27 27 H 1.09006 * 109.46750 * 47.04950 * 1 2 3 28 28 H 1.08996 * 109.46918 * 167.04794 * 1 2 3 29 29 H 1.08994 * 109.47340 * 192.94275 * 3 2 1 30 30 H 1.08996 * 109.47123 * 312.94827 * 3 2 1 31 31 H 1.09002 * 109.47145 * 72.94938 * 3 2 1 32 32 H 1.09006 * 113.47064 * 105.56834 * 4 2 1 33 33 H 1.08995 * 113.47947 * 335.10335 * 4 2 1 34 34 H 1.09001 * 109.46874 * 314.03133 * 6 5 4 35 35 H 1.08992 * 109.47407 * 194.03150 * 6 5 4 36 36 H 1.09002 * 109.47398 * 300.00295 * 7 6 5 37 37 H 1.09001 * 109.47194 * 60.00475 * 7 6 5 38 38 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 39 39 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 40 40 H 0.96996 * 119.99820 * 179.97438 * 13 12 10 41 41 H 1.08994 * 111.12549 * 273.27965 * 22 20 18 42 42 H 1.08997 * 111.12524 * 37.44547 * 22 20 18 43 43 H 1.08997 * 110.84804 * 207.67570 * 23 22 20 44 44 H 1.08996 * 111.01961 * 84.13778 * 23 22 20 45 45 H 1.09010 * 109.82922 * 261.83902 * 24 23 22 46 46 H 1.09003 * 109.90614 * 140.91803 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1342 1.4057 0.0000 4 6 2.1586 -0.9590 -1.0207 5 7 3.1619 -1.3059 0.0031 6 6 3.4331 -2.7497 0.0064 7 6 4.2788 -3.1125 -1.2159 8 6 4.5608 -4.6162 -1.2128 9 16 5.5619 -5.0454 -2.6583 10 6 5.7316 -6.7813 -2.4085 11 1 5.2739 -7.2507 -1.5503 12 6 6.4527 -7.5458 -3.3153 13 7 7.0103 -6.9737 -4.3616 14 14 6.6321 -9.3862 -3.0510 15 1 5.2881 -10.0177 -3.0382 16 1 7.4424 -9.9677 -4.1511 17 1 7.3086 -9.6362 -1.7528 18 6 2.1585 -0.9542 1.0252 19 1 1.5097 -1.7856 1.3008 20 6 2.7515 -0.2386 2.2406 21 1 1.9585 0.2106 2.8385 22 6 3.5785 -1.2296 3.0977 23 6 4.5547 -0.2567 3.8137 24 6 4.7864 0.8256 2.7375 25 8 3.6883 0.7657 1.8197 26 1 -0.3634 0.3013 0.9824 27 1 -0.3633 0.7003 -0.7522 28 1 -0.3633 -1.0015 -0.2303 29 1 3.1977 1.3441 -0.2302 30 1 1.6343 2.0159 -0.7522 31 1 2.0008 1.8585 0.9825 32 1 2.5812 -0.4530 -1.8888 33 1 1.5091 -1.7912 -1.2919 34 1 2.4907 -3.2964 -0.0285 35 1 3.9740 -3.0157 0.9145 36 1 3.7378 -2.8464 -2.1240 37 1 5.2211 -2.5657 -1.1809 38 1 5.1015 -4.8826 -0.3046 39 1 3.6184 -5.1627 -1.2479 40 1 7.5145 -7.5078 -4.9951 41 1 2.9457 -1.7505 3.8162 42 1 4.1195 -1.9365 2.4686 43 1 5.4884 -0.7596 4.0655 44 1 4.0954 0.1733 4.7037 45 1 5.7201 0.6290 2.2104 46 1 4.8255 1.8102 3.2037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368055152.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:47:17 Heat of formation + Delta-G solvation = -48.220342 kcal Electronic energy + Delta-G solvation = -22849.428989 eV Core-core repulsion = 19671.855899 eV Total energy + Delta-G solvation = -3177.573089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.166 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.04579 -39.47423 -35.91501 -34.61881 -33.14320 -32.53054 -30.94975 -28.24720 -28.09363 -27.53119 -26.16935 -24.17307 -22.57568 -22.03779 -21.85898 -19.57225 -19.16936 -17.87990 -16.96342 -16.91090 -16.76953 -16.49282 -16.01491 -15.72056 -15.56744 -14.82301 -14.73337 -14.32070 -14.20972 -14.01996 -13.59876 -13.49324 -13.37489 -13.14761 -12.95980 -12.87757 -12.79616 -12.70855 -12.53384 -12.40744 -12.22046 -12.08445 -11.92200 -11.69036 -11.60732 -11.41198 -11.15011 -11.10470 -10.69174 -10.34937 -10.22328 -9.70143 -8.69528 -8.38544 -6.15861 1.29739 1.39851 1.46691 1.71893 2.26987 2.95434 2.96206 2.99538 3.30477 3.41127 3.63390 3.76570 3.90111 4.03379 4.05203 4.06825 4.20817 4.32348 4.36666 4.38918 4.44199 4.47431 4.52190 4.66362 4.70804 4.71439 4.78703 4.85714 4.89188 4.92239 4.95233 5.00129 5.06141 5.12897 5.18188 5.23946 5.27146 5.29061 5.35558 5.37293 5.41350 5.46895 5.75671 6.14294 6.16236 6.37128 7.02998 8.70835 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.003012 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.868860 B = 9292.465628 C = 9926.896437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.101 4.101 4 C -0.002 4.002 5 N -0.461 5.461 6 C 0.036 3.964 7 C -0.077 4.077 8 C -0.085 4.085 9 S -0.200 6.200 10 C -0.540 4.540 11 H 0.073 0.927 12 C 0.015 3.985 13 N -0.908 5.908 14 Si 0.995 3.005 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.264 1.264 18 C 0.030 3.970 19 H 0.095 0.905 20 C 0.100 3.900 21 H 0.086 0.914 22 C -0.154 4.154 23 C -0.148 4.148 24 C 0.042 3.958 25 O -0.369 6.369 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.272 0.728 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.077 15.821 16.926 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.158 4.158 4 C -0.131 4.131 5 N -0.183 5.183 6 C -0.094 4.094 7 C -0.115 4.115 8 C -0.234 4.234 9 S 0.028 5.972 10 C -0.688 4.688 11 H 0.091 0.909 12 C -0.190 4.190 13 N -0.544 5.544 14 Si 0.817 3.183 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.189 1.189 18 C -0.079 4.079 19 H 0.112 0.888 20 C 0.042 3.958 21 H 0.104 0.896 22 C -0.191 4.191 23 C -0.185 4.185 24 C -0.035 4.035 25 O -0.288 6.288 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.880 16.863 15.741 25.947 hybrid contribution -0.515 -2.628 0.788 2.791 sum -12.394 14.235 16.528 25.089 Atomic orbital electron populations 1.21724 0.92376 1.02165 1.02796 1.21984 0.95727 0.95320 0.94491 1.21332 1.00213 0.92817 1.01424 1.23995 0.93775 0.98631 0.96678 1.68956 1.30082 1.14862 1.04426 1.22612 0.98847 0.89925 0.98039 1.21017 1.00247 0.91990 0.98288 1.23139 1.01052 0.99495 0.99737 1.84703 1.68367 1.10596 1.33492 1.23010 1.39665 0.92588 1.13502 0.90881 1.26102 0.93970 1.05003 0.93929 1.70160 1.33073 1.38403 1.12807 0.85048 0.78853 0.76030 0.78380 1.18807 1.19907 1.18869 1.23834 0.92947 0.97840 0.93312 0.88765 1.22752 0.92131 0.87802 0.93067 0.89637 1.23312 0.98420 0.98366 0.99031 1.23052 1.00529 0.96311 0.98635 1.23151 0.90510 0.99157 0.90638 1.88650 1.33367 1.56854 1.49961 0.91193 0.91705 0.92492 0.92869 0.92992 0.91690 0.90955 0.91222 0.93559 0.90560 0.92368 0.92343 0.92023 0.91935 0.91925 0.88801 0.91769 0.90207 0.89206 0.93054 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.29 71.98 0.67 -1.20 16 2 C -0.07 -1.39 1.43 -51.84 -0.07 -1.46 16 3 C -0.10 -1.99 7.50 71.98 0.54 -1.45 16 4 C 0.00 -0.04 6.11 83.58 0.51 0.47 16 5 N -0.46 -11.54 5.66 -901.88 -5.10 -16.64 16 6 C 0.04 0.97 4.63 86.30 0.40 1.37 16 7 C -0.08 -2.66 5.32 30.59 0.16 -2.49 16 8 C -0.08 -3.54 5.67 71.98 0.41 -3.13 16 9 S -0.20 -11.03 21.44 -56.49 -1.21 -12.24 16 10 C -0.54 -31.84 9.50 67.95 0.65 -31.20 16 11 H 0.07 4.12 7.80 -2.91 -0.02 4.10 16 12 C 0.01 0.86 5.49 84.86 0.47 1.32 16 13 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 14 Si 1.00 44.37 29.55 68.60 2.03 46.40 16 15 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 C 0.03 0.58 2.48 42.19 0.10 0.68 16 19 H 0.09 1.64 7.73 -2.39 -0.02 1.62 16 20 C 0.10 1.78 3.06 31.26 0.10 1.88 16 21 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 22 C -0.15 -2.56 6.56 32.05 0.21 -2.35 16 23 C -0.15 -2.18 7.02 31.86 0.22 -1.95 16 24 C 0.04 0.77 7.79 72.45 0.56 1.33 16 25 O -0.37 -7.98 6.92 -148.98 -1.03 -9.02 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.86 8.13 -2.38 -0.02 0.84 16 28 H 0.06 0.79 7.90 -2.39 -0.02 0.77 16 29 H 0.05 1.33 6.92 -2.39 -0.02 1.31 16 30 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.06 1.22 6.79 -2.39 -0.02 1.21 16 32 H 0.07 1.83 8.12 -2.38 -0.02 1.81 16 33 H 0.07 1.56 7.49 -2.39 -0.02 1.54 16 34 H 0.05 1.17 7.56 -2.39 -0.02 1.15 16 35 H 0.08 2.03 6.37 -2.39 -0.02 2.01 16 36 H 0.06 2.08 7.67 -2.39 -0.02 2.06 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.06 2.53 8.14 -2.40 -0.02 2.52 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.35 5.98 -2.39 -0.01 1.33 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -68.05 366.30 0.82 -67.23 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.92 Total: 17.99 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 4.93 Total: -38.18 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -4.82 Total: -72.19 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.03 Total: -9.02 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -1.21 Total: -12.24 kcal Total: -68.05 0.82 -67.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368055152.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.009 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds