Wall clock time and date at job start Fri Apr 10 2020 20:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86797 * 119.99727 * 2 1 4 4 H 1.48497 * 109.47249 * 265.52830 * 3 2 1 5 5 H 1.48500 * 109.47427 * 25.52928 * 3 2 1 6 6 H 1.48504 * 109.47449 * 145.52923 * 3 2 1 7 7 C 1.38892 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99632 * 338.14807 * 7 2 1 9 9 N 1.37132 * 119.99990 * 158.15011 * 7 2 1 10 10 C 1.34779 * 119.99905 * 150.36501 * 9 7 2 11 11 O 1.21287 * 119.99573 * 184.44980 * 10 9 7 12 12 C 1.50693 * 120.00204 * 4.44311 * 10 9 7 13 13 H 1.09010 * 109.46823 * 60.00651 * 12 10 9 14 14 C 1.52998 * 109.47267 * 300.00727 * 12 10 9 15 15 C 1.53009 * 109.46967 * 239.99737 * 14 12 10 16 16 C 1.53000 * 109.46940 * 299.99839 * 15 14 12 17 17 C 1.53004 * 109.46875 * 60.00143 * 16 15 14 18 18 C 1.52994 * 109.47368 * 359.97438 * 17 16 15 19 19 C 1.53000 * 109.46959 * 60.00406 * 18 17 16 20 20 C 1.52995 * 109.46774 * 59.99645 * 15 14 12 21 21 C 1.39790 * 119.99852 * 330.35619 * 9 7 2 22 22 C 1.38959 * 120.08115 * 299.00105 * 21 9 7 23 23 C 1.38085 * 119.92466 * 180.23116 * 22 21 9 24 24 C 1.38308 * 120.07550 * 359.51864 * 23 22 21 25 25 C 1.38315 * 120.15542 * 0.46318 * 24 23 22 26 26 C 1.38087 * 120.07777 * 359.79299 * 25 24 23 27 27 H 0.96998 * 120.00632 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47082 * 359.97438 * 14 12 10 29 29 H 1.09004 * 109.47292 * 119.99738 * 14 12 10 30 30 H 1.09000 * 109.46875 * 180.02562 * 15 14 12 31 31 H 1.09000 * 109.46911 * 179.97438 * 16 15 14 32 32 H 1.08994 * 109.47372 * 299.99861 * 16 15 14 33 33 H 1.09009 * 109.46815 * 239.99184 * 17 16 15 34 34 H 1.09006 * 109.47057 * 120.00358 * 17 16 15 35 35 H 1.09000 * 109.47231 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.47026 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47394 * 59.99886 * 19 18 17 38 38 H 1.09008 * 109.47311 * 60.00461 * 20 15 14 39 39 H 1.09000 * 109.46816 * 179.97438 * 20 15 14 40 40 H 1.08007 * 120.03551 * 359.96158 * 22 21 9 41 41 H 1.07997 * 119.96234 * 179.74837 * 23 22 21 42 42 H 1.07994 * 119.92329 * 180.25226 * 24 23 22 43 43 H 1.07998 * 119.96261 * 179.76233 * 25 24 23 44 44 H 1.07996 * 120.03807 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.5901 1.9919 -1.3958 5 1 1.4015 2.6781 0.6034 6 1 3.4953 1.4694 0.7924 7 6 2.0088 -1.2028 0.0005 8 1 1.5269 -2.1044 0.3491 9 7 3.3062 -1.2456 -0.4414 10 6 4.1614 -2.1552 0.0663 11 8 5.3282 -2.1413 -0.2646 12 6 3.6680 -3.1893 1.0450 13 1 2.8906 -3.7922 0.5755 14 6 3.0954 -2.4905 2.2799 15 6 3.8765 -2.9273 3.5210 16 6 3.7571 -4.4431 3.6915 17 6 4.3296 -5.1417 2.4565 18 6 4.8301 -4.0918 1.4626 19 6 5.9212 -3.2453 2.1213 20 6 5.3493 -2.5470 3.3566 21 6 3.7417 -0.3459 -1.4187 22 6 3.1482 -0.3412 -2.6752 23 6 3.5842 0.5456 -3.6396 24 6 4.6035 1.4354 -3.3530 25 6 5.1962 1.4339 -2.1033 26 6 4.7689 0.5462 -1.1358 27 1 -0.4851 0.8400 -0.0004 28 1 3.1808 -1.4107 2.1586 29 1 2.0461 -2.7615 2.3969 30 1 3.4683 -2.4298 4.4008 31 1 4.3139 -4.7542 4.5754 32 1 2.7079 -4.7140 3.8085 33 1 3.5522 -5.7447 1.9871 34 1 5.1579 -5.7848 2.7542 35 1 5.2384 -4.5896 0.5831 36 1 6.2774 -2.4969 1.4133 37 1 6.7497 -3.8879 2.4188 38 1 5.4343 -1.4670 3.2352 39 1 5.9056 -2.8577 4.2410 40 1 2.3499 -1.0335 -2.8985 41 1 3.1261 0.5470 -4.6176 42 1 4.9397 2.1308 -4.1078 43 1 5.9945 2.1275 -1.8841 44 1 5.2324 0.5453 -0.1603 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000460049607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:45:08 Heat of formation + Delta-G solvation = -9.942136 kcal Electronic energy + Delta-G solvation = -25906.404837 eV Core-core repulsion = 22595.047664 eV Total energy + Delta-G solvation = -3311.357173 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.69288 -39.19988 -37.24723 -34.97897 -32.10669 -31.12570 -30.84374 -30.39127 -30.30666 -28.70445 -25.12492 -23.33693 -22.18499 -22.07346 -21.77995 -21.14157 -19.05130 -18.01213 -16.61558 -16.11642 -16.01611 -15.81495 -15.37126 -15.08266 -14.68259 -14.54045 -13.70096 -13.35241 -13.16791 -12.84233 -12.71847 -12.44824 -12.28089 -12.00480 -11.70663 -11.68395 -11.55401 -11.51099 -11.47202 -11.14520 -11.02399 -10.84074 -10.62023 -10.53914 -10.17417 -9.96452 -9.72901 -9.41743 -9.37913 -9.25999 -8.51397 -8.40906 -8.23473 -7.59725 -6.54984 -4.11157 1.92864 2.03018 3.17397 3.29645 3.34375 3.61971 4.16096 4.21263 4.42083 4.92269 4.97238 5.07621 5.12306 5.47235 5.53432 5.62172 5.63586 5.66628 5.70693 5.77190 5.79343 5.83068 5.89504 5.97155 6.00789 6.05398 6.06603 6.19389 6.27479 6.31619 6.39523 6.49357 6.54981 6.63134 6.66451 6.73574 6.86084 6.92509 6.94126 7.02366 7.05706 7.08446 7.18926 7.29591 7.62523 7.95870 8.23003 8.83319 9.23825 9.55198 10.53172 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.018319 B = 0.006532 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.086698 B = 4285.443620 C = 4944.716469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.078 3.922 3 Si 0.857 3.143 4 H -0.255 1.255 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.347 4.347 8 H 0.115 0.885 9 N -0.425 5.425 10 C 0.489 3.511 11 O -0.575 6.575 12 C -0.077 4.077 13 H 0.085 0.915 14 C -0.090 4.090 15 C -0.090 4.090 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.064 4.064 19 C -0.122 4.122 20 C -0.111 4.111 21 C 0.161 3.839 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.144 4.144 25 C -0.117 4.117 26 C -0.126 4.126 27 H 0.276 0.724 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -3.271 2.320 7.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.131 4.131 3 Si 0.683 3.317 4 H -0.179 1.179 5 H -0.221 1.221 6 H -0.186 1.186 7 C -0.473 4.473 8 H 0.132 0.868 9 N -0.140 5.140 10 C 0.281 3.719 11 O -0.458 6.458 12 C -0.098 4.098 13 H 0.103 0.897 14 C -0.128 4.128 15 C -0.109 4.109 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.083 4.083 19 C -0.160 4.160 20 C -0.149 4.149 21 C 0.068 3.932 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.162 4.162 25 C -0.136 4.136 26 C -0.146 4.146 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.398 -3.204 2.192 7.484 hybrid contribution 0.019 0.996 0.065 0.999 sum 6.417 -2.208 2.257 7.152 Atomic orbital electron populations 1.69758 1.06234 1.28429 1.44310 1.25147 0.94993 0.98355 0.94591 0.87195 0.80155 0.83509 0.80836 1.17941 1.22092 1.18642 1.19145 0.85611 0.97339 1.45155 0.86772 1.41562 1.11203 1.29210 1.32073 1.20589 0.84918 0.84427 0.81965 1.90498 1.17133 1.75917 1.62237 1.20937 0.97885 0.95402 0.95569 0.89717 1.21458 0.98576 1.01437 0.91311 1.21132 0.95849 0.95413 0.98491 1.21521 1.00465 0.95389 0.97409 1.21544 0.99961 0.97331 0.96101 1.20757 0.94971 0.95048 0.97481 1.21747 0.96814 0.99960 0.97450 1.21526 0.95463 1.00120 0.97772 1.17726 0.94480 0.91832 0.89118 1.21167 1.00834 0.99787 0.91660 1.20894 0.97440 0.96237 0.98767 1.20921 0.98210 1.00258 0.96840 1.20849 1.00013 0.99092 0.93642 1.21170 0.98529 0.95216 0.99676 0.91356 0.90364 0.91320 0.91677 0.92749 0.92212 0.92317 0.92438 0.91355 0.88906 0.93398 0.92570 0.93032 0.85557 0.86508 0.86867 0.86685 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.93 13.96 55.49 0.77 -22.16 16 2 C 0.08 2.01 5.21 -17.48 -0.09 1.91 16 3 Si 0.86 20.62 23.63 -169.99 -4.02 16.61 16 4 H -0.25 -6.09 5.72 56.52 0.32 -5.77 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.33 6.27 56.52 0.35 -5.98 16 7 C -0.35 -8.61 7.34 -14.94 -0.11 -8.72 16 8 H 0.11 2.90 6.32 -52.48 -0.33 2.56 16 9 N -0.43 -10.03 2.44 -58.98 -0.14 -10.18 16 10 C 0.49 10.93 6.39 -10.99 -0.07 10.86 16 11 O -0.57 -13.64 12.98 5.55 0.07 -13.57 16 12 C -0.08 -1.45 1.79 -91.80 -0.16 -1.61 16 13 H 0.08 1.59 7.78 -51.92 -0.40 1.19 16 14 C -0.09 -1.63 3.80 -26.73 -0.10 -1.74 16 15 C -0.09 -1.38 3.20 -90.62 -0.29 -1.67 16 16 C -0.11 -1.46 5.71 -26.73 -0.15 -1.62 16 17 C -0.11 -1.53 5.71 -26.73 -0.15 -1.68 16 18 C -0.06 -1.05 2.36 -90.65 -0.21 -1.27 16 19 C -0.12 -2.03 5.39 -26.73 -0.14 -2.18 16 20 C -0.11 -1.72 5.71 -26.73 -0.15 -1.87 16 21 C 0.16 3.72 2.38 -83.69 -0.20 3.52 16 22 C -0.11 -2.46 8.68 -39.37 -0.34 -2.80 16 23 C -0.11 -2.12 9.86 -39.61 -0.39 -2.51 16 24 C -0.14 -2.52 9.89 -39.53 -0.39 -2.91 16 25 C -0.12 -2.21 9.60 -39.61 -0.38 -2.59 16 26 C -0.13 -2.76 5.67 -39.37 -0.22 -2.98 16 27 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.08 1.64 6.64 -51.93 -0.35 1.29 16 29 H 0.07 1.24 7.84 -51.93 -0.41 0.84 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.09 1.81 5.51 -51.93 -0.29 1.53 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.13 2.70 8.06 -52.48 -0.42 2.28 16 41 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.12 2.65 7.72 -52.49 -0.41 2.24 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -27.71 326.39 -8.90 -36.61 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.93 Total: 7.62 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -3.57 Total: -19.85 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.63 Total: -32.33 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.07 Total: -13.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.02 Total: 16.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.71 -8.90 -36.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000460049607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.670 kcal (2) G-P(sol) polarization free energy of solvation -27.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds