Wall clock time and date at job start Fri Apr 10 2020 20:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00120 * 2 1 3 5 5 H 1.08996 * 109.46876 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46969 * 59.99949 * 4 2 1 7 7 N 1.46500 * 109.46766 * 300.00104 * 4 2 1 8 8 C 1.34782 * 119.99875 * 205.00218 * 7 4 2 9 9 O 1.21283 * 119.99443 * 359.97438 * 8 7 4 10 10 C 1.50697 * 119.99889 * 180.02562 * 8 7 4 11 11 S 1.81000 * 109.46641 * 179.97438 * 10 8 7 12 12 C 1.76209 * 99.99657 * 179.97438 * 11 10 8 13 13 H 1.07988 * 120.00131 * 359.97438 * 12 11 10 14 14 C 1.38806 * 119.99794 * 179.97438 * 12 11 10 15 15 N 1.31632 * 119.99738 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99703 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47235 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46906 * 120.00208 * 16 14 12 19 19 H 1.48497 * 109.46929 * 239.99921 * 16 14 12 20 20 C 1.52997 * 109.46978 * 240.00199 * 2 1 3 21 21 C 1.53002 * 109.47415 * 59.99902 * 20 2 1 22 22 C 1.53000 * 109.47233 * 180.02562 * 21 20 2 23 23 C 1.52997 * 109.47060 * 299.99657 * 22 21 20 24 24 C 1.52999 * 109.47317 * 59.99960 * 23 22 21 25 25 C 1.52997 * 109.47232 * 179.97438 * 20 2 1 26 26 H 1.09001 * 109.47142 * 60.00035 * 1 2 3 27 27 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46698 * 299.99981 * 1 2 3 29 29 H 1.08996 * 109.47452 * 59.99938 * 6 4 2 30 30 H 1.09001 * 109.46997 * 180.02562 * 6 4 2 31 31 H 1.09000 * 109.47054 * 300.00097 * 6 4 2 32 32 H 0.97001 * 120.00505 * 24.99605 * 7 4 2 33 33 H 1.08995 * 109.47106 * 299.99370 * 10 8 7 34 34 H 1.08998 * 109.47252 * 59.99888 * 10 8 7 35 35 H 0.97000 * 119.99410 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47497 * 299.99550 * 20 2 1 37 37 H 1.08992 * 109.47063 * 59.99950 * 21 20 2 38 38 H 1.09004 * 109.46733 * 299.99664 * 21 20 2 39 39 H 1.09002 * 109.47398 * 59.99826 * 22 21 20 40 40 H 1.09001 * 109.47194 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47853 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47153 * 300.00319 * 23 22 21 43 43 H 1.09000 * 109.47486 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.46716 * 60.00091 * 24 23 22 45 45 H 1.09002 * 109.47153 * 299.99992 * 25 20 2 46 46 H 1.09001 * 109.47289 * 60.00075 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1301 -0.7216 1.2489 6 6 1.5301 -2.1637 1.2492 7 7 1.5518 -0.0307 2.4454 8 6 2.2286 -0.1333 3.6064 9 8 3.2417 -0.7979 3.6608 10 6 1.7260 0.5766 4.8369 11 16 2.8426 0.2459 6.2225 12 6 2.0394 1.1697 7.4899 13 1 1.1325 1.7131 7.2698 14 6 2.5724 1.1990 8.7712 15 7 3.6781 0.5371 9.0393 16 14 1.7213 2.1790 10.1146 17 1 0.5064 2.8281 9.5597 18 1 1.3336 1.2683 11.2216 19 1 2.6471 3.2192 10.6305 20 6 2.0400 -0.7212 -1.2493 21 6 1.5300 0.0000 -2.4985 22 6 2.0394 -0.7216 -3.7478 23 6 3.5694 -0.7220 -3.7481 24 6 4.0795 -1.4432 -2.4989 25 6 3.5699 -0.7207 -1.2496 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -2.6776 0.3592 30 1 1.8932 -2.6775 2.1394 31 1 0.4401 -2.1637 1.2492 32 1 0.7413 0.5006 2.4019 33 1 1.6889 1.6494 4.6478 34 1 0.7269 0.2160 5.0818 35 1 4.0508 0.5579 9.9347 36 1 1.6767 -1.7489 -1.2493 37 1 1.8933 1.0276 -2.4985 38 1 0.4399 0.0000 -2.4985 39 1 1.6758 -1.7491 -3.7476 40 1 1.6765 -0.2075 -4.6378 41 1 3.9325 -1.2357 -4.6383 42 1 3.9331 0.3055 -3.7483 43 1 5.1695 -1.4432 -2.4989 44 1 3.7159 -2.4708 -2.4987 45 1 3.9329 0.3071 -1.2498 46 1 3.9337 -1.2343 -0.3597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177998564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:23 Heat of formation + Delta-G solvation = -99.789677 kcal Electronic energy + Delta-G solvation = -22407.537616 eV Core-core repulsion = 19227.728313 eV Total energy + Delta-G solvation = -3179.809303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.166 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.15887 -39.85050 -37.22907 -34.59301 -34.16481 -31.96396 -31.37136 -29.78128 -29.50208 -27.66804 -25.74459 -23.61043 -23.13545 -21.61581 -20.79912 -20.22449 -19.72422 -17.93646 -17.30584 -16.88695 -16.46405 -16.37659 -15.93584 -15.76578 -15.09423 -14.82515 -14.78676 -14.63053 -14.48095 -14.23741 -13.88911 -13.46871 -13.27070 -13.16626 -13.13937 -12.92413 -12.89432 -12.76857 -12.58995 -12.15698 -11.98301 -11.89830 -11.77296 -11.69117 -11.55249 -11.21467 -11.16299 -10.97907 -10.74450 -10.65483 -10.27561 -10.07050 -8.67218 -8.35296 -6.13303 1.27103 1.41101 1.47144 1.58384 1.63992 2.26018 2.32414 2.98833 3.32113 3.64415 3.71806 3.87885 3.97866 4.00679 4.11338 4.28481 4.29537 4.37637 4.42403 4.48555 4.49866 4.56898 4.64505 4.69895 4.72669 4.76576 4.81907 4.90352 4.97598 5.07020 5.09579 5.14919 5.22439 5.25903 5.31284 5.36448 5.37567 5.41593 5.45339 5.48702 5.59564 5.60922 5.70047 6.19648 6.54601 7.06012 7.28581 8.74254 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.036779 B = 0.002588 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.123949 B =10815.058586 C =11148.826703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.072 0.928 4 C 0.144 3.856 5 H 0.064 0.936 6 C -0.161 4.161 7 N -0.709 5.709 8 C 0.533 3.467 9 O -0.566 6.566 10 C -0.130 4.130 11 S -0.152 6.152 12 C -0.545 4.545 13 H 0.082 0.918 14 C 0.012 3.988 15 N -0.912 5.912 16 Si 1.000 3.000 17 H -0.256 1.256 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.073 4.073 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.122 4.122 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.412 0.588 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 -0.571 -27.165 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.091 0.909 4 C 0.039 3.961 5 H 0.082 0.918 6 C -0.219 4.219 7 N -0.363 5.363 8 C 0.318 3.682 9 O -0.444 6.444 10 C -0.281 4.281 11 S 0.075 5.925 12 C -0.692 4.692 13 H 0.101 0.899 14 C -0.193 4.193 15 N -0.548 5.548 16 Si 0.822 3.178 17 H -0.180 1.180 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.092 4.092 21 C -0.149 4.149 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.160 4.160 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.250 0.750 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.177 -1.717 -26.983 27.974 hybrid contribution -1.274 1.297 1.174 2.164 sum -8.451 -0.420 -25.809 27.161 Atomic orbital electron populations 1.21986 0.93437 1.02919 1.02627 1.21360 0.97294 0.99327 0.92301 0.90923 1.21080 0.98784 0.92315 0.83879 0.91830 1.22227 1.02333 0.95637 1.01684 1.45964 1.29302 1.52564 1.08512 1.20073 0.83225 0.80139 0.84720 1.90681 1.26462 1.42068 1.85204 1.23378 1.04322 1.04258 0.96127 1.85585 1.36401 1.67720 1.02819 1.23232 1.13766 1.35462 0.96781 0.89945 1.26156 0.95665 0.96689 1.00793 1.70196 1.20949 1.41457 1.22224 0.84885 0.78358 0.77660 0.76913 1.18007 1.19905 1.19904 1.21161 0.94537 1.00070 0.93423 1.21616 1.01008 0.98991 0.93266 1.21530 0.95176 1.00958 0.97874 1.21539 0.96240 1.00467 0.97428 1.21529 1.00064 0.99471 0.94557 1.21685 0.95971 1.00518 0.97799 0.90572 0.91577 0.92497 0.89970 0.95316 0.90589 0.74989 0.87375 0.87359 0.91998 0.90231 0.92306 0.90527 0.91816 0.91352 0.91666 0.92420 0.92494 0.91853 0.92603 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.32 71.98 0.60 -1.19 16 2 C -0.08 -1.30 1.97 -10.79 -0.02 -1.33 16 3 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.14 3.31 2.05 44.99 0.09 3.40 16 5 H 0.06 1.85 5.86 -2.39 -0.01 1.83 16 6 C -0.16 -3.52 8.78 71.98 0.63 -2.88 16 7 N -0.71 -18.52 5.00 -442.53 -2.21 -20.74 16 8 C 0.53 20.20 7.81 87.66 0.68 20.88 16 9 O -0.57 -26.87 15.53 -3.04 -0.05 -26.92 16 10 C -0.13 -5.24 6.16 71.23 0.44 -4.81 16 11 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 12 C -0.54 -31.42 9.50 67.96 0.65 -30.77 16 13 H 0.08 4.42 7.80 -2.92 -0.02 4.40 16 14 C 0.01 0.66 5.49 84.86 0.47 1.13 16 15 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 16 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 17 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 C -0.07 -1.01 1.42 -10.79 -0.02 -1.02 16 21 C -0.11 -1.23 4.85 30.60 0.15 -1.09 16 22 C -0.12 -1.24 5.92 30.59 0.18 -1.06 16 23 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 24 C -0.12 -1.73 5.93 30.61 0.18 -1.54 16 25 C -0.12 -2.07 4.85 30.61 0.15 -1.92 16 26 H 0.08 0.70 6.43 -2.39 -0.02 0.68 16 27 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 28 H 0.06 0.65 6.51 -2.39 -0.02 0.63 16 29 H 0.08 1.49 6.43 -2.39 -0.02 1.47 16 30 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.38 6.43 -2.39 -0.02 1.36 16 32 H 0.41 8.05 6.87 -92.71 -0.64 7.41 16 33 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 34 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 35 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.08 1.07 6.43 -2.39 -0.02 1.06 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.70 6.43 -2.39 -0.02 0.68 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.05 1.03 6.43 -2.39 -0.02 1.01 16 Total: -1.00 -74.56 362.22 3.57 -70.99 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.32 Total: 20.20 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 4.36 Total: -23.46 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -1.93 Total: -77.00 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -74.56 3.57 -70.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177998564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.803 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds