Wall clock time and date at job start Fri Apr 10 2020 20:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09003 * 109.46991 * 184.57630 * 3 2 1 5 5 C 1.53000 * 109.47372 * 304.57914 * 3 2 1 6 6 C 1.53002 * 109.47426 * 185.00236 * 5 3 2 7 7 C 1.52994 * 109.47142 * 179.97438 * 6 5 3 8 8 N 1.46502 * 109.47326 * 64.57765 * 3 2 1 9 9 C 1.34778 * 119.99571 * 85.00199 * 8 3 2 10 10 O 1.21283 * 120.00463 * 359.97438 * 9 8 3 11 11 C 1.50706 * 120.00010 * 180.02562 * 9 8 3 12 12 C 1.52995 * 109.47514 * 179.97438 * 11 9 8 13 13 H 1.09008 * 109.46715 * 55.00049 * 12 11 9 14 14 C 1.50694 * 109.47256 * 295.00358 * 12 11 9 15 15 H 1.08007 * 119.99955 * 325.83666 * 14 12 11 16 16 C 1.37879 * 120.00414 * 145.84604 * 14 12 11 17 17 N 1.31515 * 119.99666 * 6.11128 * 16 14 12 18 18 Si 1.86797 * 120.00187 * 186.11960 * 16 14 12 19 19 H 1.48505 * 109.46955 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47202 * 119.99413 * 18 16 14 21 21 H 1.48504 * 109.46880 * 239.99576 * 18 16 14 22 22 C 1.50698 * 109.47280 * 174.99827 * 12 11 9 23 23 C 1.38233 * 119.99930 * 63.47020 * 22 12 11 24 24 C 1.38240 * 119.99920 * 179.78975 * 23 22 12 25 25 C 1.38233 * 119.99789 * 0.44131 * 24 23 22 26 26 C 1.38238 * 120.00486 * 359.81239 * 25 24 23 27 27 C 1.38238 * 119.99565 * 359.97438 * 26 25 24 28 28 H 4.18737 * 15.03871 * 0.02562 * 4 2 1 29 29 H 1.09007 * 109.46807 * 305.00170 * 5 3 2 30 30 H 1.09003 * 109.47333 * 65.00189 * 5 3 2 31 31 H 1.08999 * 109.46926 * 300.00408 * 6 5 3 32 32 H 1.09003 * 109.46903 * 59.99690 * 6 5 3 33 33 H 1.09000 * 109.47034 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47441 * 299.99616 * 7 6 5 35 35 H 1.09003 * 109.47384 * 60.00096 * 7 6 5 36 36 H 0.97001 * 120.00175 * 264.99818 * 8 3 2 37 37 H 1.08999 * 109.46670 * 299.99818 * 11 9 8 38 38 H 1.09003 * 109.46971 * 59.98911 * 11 9 8 39 39 H 0.97003 * 120.00037 * 180.02562 * 17 16 14 40 40 H 1.08002 * 119.99998 * 0.02562 * 23 22 12 41 41 H 1.07994 * 119.99800 * 180.28015 * 24 23 22 42 42 H 1.07997 * 119.99929 * 179.83654 * 25 24 23 43 43 H 1.07989 * 120.00464 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00035 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0252 0.0820 5 6 3.1564 -0.8178 1.1877 6 6 4.6812 -0.7146 1.2606 7 6 5.1915 -1.5325 2.4486 8 7 3.1347 -0.5921 -1.2475 9 6 3.2631 0.1710 -2.3510 10 8 2.9737 1.3481 -2.3115 11 6 3.7652 -0.4388 -3.6345 12 6 3.8158 0.6346 -4.7236 13 1 4.4171 1.4753 -4.3774 14 6 2.4178 1.1082 -5.0274 15 1 1.5900 0.4164 -4.9754 16 6 2.1954 2.4246 -5.3719 17 7 3.2131 3.2378 -5.5528 18 14 0.4489 3.0531 -5.5813 19 1 -0.5090 1.9478 -5.3242 20 1 0.2014 4.1570 -4.6195 21 1 0.2659 3.5537 -6.9674 22 6 4.4323 0.0559 -5.9710 23 6 3.8035 -0.9798 -6.6363 24 6 4.3669 -1.5077 -7.7830 25 6 5.5637 -1.0060 -8.2592 26 6 6.1953 0.0262 -7.5909 27 6 5.6297 0.5571 -6.4466 28 1 -1.0499 -0.0011 0.0004 29 1 2.7216 -0.4308 2.1093 30 1 2.8686 -1.8614 1.0603 31 1 5.1160 -1.1015 0.3390 32 1 4.9691 0.3290 1.3879 33 1 6.2778 -1.4586 2.5008 34 1 4.7567 -1.1451 3.3700 35 1 4.9037 -2.5761 2.3217 36 1 3.3658 -1.5336 -1.2792 37 1 4.7645 -0.8447 -3.4772 38 1 3.0927 -1.2388 -3.9441 39 1 3.0567 4.1641 -5.7948 40 1 2.8701 -1.3740 -6.2625 41 1 3.8733 -2.3138 -8.3054 42 1 6.0052 -1.4202 -9.1535 43 1 7.1305 0.4179 -7.9626 44 1 6.1228 1.3638 -5.9247 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490719607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:35 Heat of formation + Delta-G solvation = 22.871513 kcal Electronic energy + Delta-G solvation = -23755.129751 eV Core-core repulsion = 20445.195484 eV Total energy + Delta-G solvation = -3309.934266 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.163 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.30073 -38.26324 -36.50622 -33.97260 -33.38959 -32.22122 -31.37598 -29.98495 -29.32343 -28.24369 -25.54648 -24.06833 -22.68865 -21.60819 -21.16362 -20.30831 -19.22973 -18.13212 -16.62600 -16.29564 -15.94874 -15.70750 -14.85799 -14.78376 -14.45048 -14.12739 -13.85620 -13.81868 -13.60120 -12.97914 -12.63138 -12.54798 -12.30355 -12.06268 -11.92228 -11.77982 -11.59760 -11.56529 -11.16120 -10.85598 -10.79983 -10.67831 -10.52722 -10.36573 -10.23036 -10.03677 -9.91854 -9.41657 -9.02973 -8.86164 -8.70456 -8.30404 -8.02054 -7.57983 -5.90603 -3.89445 2.31263 2.36992 2.84220 3.04845 3.39447 3.46930 3.49484 3.56376 3.95416 4.42646 4.55237 4.77702 4.86614 4.90193 5.00512 5.33583 5.41945 5.46088 5.56321 5.66016 5.68295 5.73836 5.75466 5.86295 5.91440 5.96340 6.11635 6.12480 6.17318 6.21127 6.23973 6.31556 6.43738 6.56303 6.83232 6.90558 6.93621 7.07334 7.33409 7.47248 7.55519 7.83434 7.89209 7.97810 8.06402 8.11844 8.41820 9.09208 9.11750 9.72573 11.19721 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.004859 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.989263 B = 5761.084194 C = 7352.469580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.189 4.189 3 C 0.254 3.746 4 H 0.106 0.894 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.151 4.151 8 N -0.741 5.741 9 C 0.513 3.487 10 O -0.490 6.490 11 C -0.122 4.122 12 C 0.080 3.920 13 H 0.072 0.928 14 C -0.490 4.490 15 H 0.050 0.950 16 C 0.079 3.921 17 N -0.881 5.881 18 Si 0.886 3.114 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.287 1.287 22 C -0.020 4.020 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.119 4.119 28 H 0.214 0.786 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.394 0.606 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.258 0.742 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 -11.193 9.986 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.149 3.851 4 H 0.123 0.877 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.209 4.209 8 N -0.397 5.397 9 C 0.300 3.700 10 O -0.360 6.360 11 C -0.162 4.162 12 C 0.061 3.939 13 H 0.090 0.910 14 C -0.527 4.527 15 H 0.068 0.932 16 C -0.124 4.124 17 N -0.519 5.519 18 Si 0.714 3.286 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.214 1.214 22 C -0.021 4.021 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.174 4.174 26 C -0.146 4.146 27 C -0.137 4.137 28 H 0.230 0.770 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.228 0.772 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.325 -10.083 9.939 14.543 hybrid contribution -1.309 0.049 -0.364 1.360 sum 2.016 -10.034 9.575 14.015 Atomic orbital electron populations 1.24866 0.95889 1.01287 0.99893 1.23664 0.94901 0.99927 1.00505 1.17688 0.82918 0.99519 0.84929 0.87683 1.21835 0.96190 1.00395 0.97153 1.21537 0.94616 1.01048 0.99098 1.21766 1.00914 1.00017 0.98159 1.46311 1.69876 1.13317 1.10152 1.20979 0.77425 0.87156 0.84434 1.90767 1.46019 1.15871 1.83387 1.21800 0.99764 1.00921 0.93706 1.17839 0.97789 0.92316 0.85988 0.90978 1.20709 0.90976 0.94466 1.46576 0.93196 1.24792 0.96254 0.96912 0.94454 1.69921 1.29743 1.05327 1.46876 0.86647 0.85726 0.79047 0.77160 1.20000 1.21038 1.21397 1.20732 0.91223 0.91386 0.98729 1.20947 0.99370 0.97511 0.95539 1.20970 0.96302 1.00481 0.97242 1.20790 0.97015 0.99250 1.00373 1.20980 0.99679 0.97448 0.96513 1.21087 0.96164 0.99706 0.96724 0.76956 0.90481 0.91210 0.91265 0.91590 0.92686 0.92871 0.92803 0.77211 0.91574 0.90555 0.93230 0.86949 0.87705 0.87837 0.87663 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.97 19.25 29.55 0.57 -2.40 16 2 C -0.19 -2.99 12.84 -37.12 -0.48 -3.46 16 3 C 0.25 3.62 2.41 -70.72 -0.17 3.45 16 4 H 0.11 1.69 7.58 -51.93 -0.39 1.30 16 5 C -0.12 -1.18 4.71 -26.73 -0.13 -1.30 16 6 C -0.13 -1.16 5.82 -26.73 -0.16 -1.32 16 7 C -0.15 -1.16 9.91 37.15 0.37 -0.79 16 8 N -0.74 -11.05 4.50 -56.54 -0.25 -11.30 16 9 C 0.51 10.22 7.52 -10.98 -0.08 10.14 16 10 O -0.49 -12.33 14.65 5.55 0.08 -12.24 16 11 C -0.12 -2.34 4.95 -27.88 -0.14 -2.48 16 12 C 0.08 1.91 1.67 -92.93 -0.16 1.75 16 13 H 0.07 1.98 6.98 -51.92 -0.36 1.62 16 14 C -0.49 -13.32 6.37 -34.44 -0.22 -13.54 16 15 H 0.05 1.37 7.82 -52.48 -0.41 0.96 16 16 C 0.08 2.26 5.45 -17.82 -0.10 2.17 16 17 N -0.88 -26.18 12.87 55.43 0.71 -25.47 16 18 Si 0.89 22.74 29.54 -169.99 -5.02 17.72 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C -0.02 -0.44 4.77 -104.62 -0.50 -0.94 16 23 C -0.12 -2.35 8.86 -39.58 -0.35 -2.70 16 24 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 25 C -0.16 -2.73 10.05 -39.58 -0.40 -3.13 16 26 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 27 C -0.12 -2.51 9.67 -39.58 -0.38 -2.90 16 28 H 0.21 2.38 7.80 -54.09 -0.42 1.95 16 29 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.39 4.59 8.60 -40.82 -0.35 4.24 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.37 7.78 -51.93 -0.40 0.97 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.11 2.21 7.76 -52.49 -0.41 1.80 16 41 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.11 2.42 7.95 -52.49 -0.42 2.01 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -33.25 376.72 -8.85 -42.09 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.93 Total: 6.55 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -3.11 Total: -23.01 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.46 Total: -36.77 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.25 -8.85 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490719607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.964 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds