Wall clock time and date at job start Fri Apr 10 2020 20:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46668 * 2 1 4 4 C 1.53001 * 109.47194 * 119.99429 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 S 1.81404 * 109.46946 * 180.02562 * 5 4 2 7 7 C 1.81397 * 103.00143 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47452 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99941 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00090 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.63127 * 359.71062 * 10 8 7 12 12 C 1.53627 * 108.53869 * 126.37459 * 11 10 8 13 13 C 1.53042 * 109.24318 * 54.85842 * 12 11 10 14 14 C 1.53038 * 109.53879 * 298.50896 * 13 12 11 15 15 H 1.09000 * 109.49987 * 301.41848 * 14 13 12 16 16 C 1.50697 * 109.49987 * 181.31755 * 14 13 12 17 17 H 1.08003 * 119.99814 * 0.16215 * 16 14 13 18 18 C 1.37870 * 120.00131 * 180.16506 * 16 14 13 19 19 N 1.31516 * 120.00289 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00059 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47158 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47130 * 119.99886 * 20 18 16 23 23 H 1.48498 * 109.47142 * 239.99916 * 20 18 16 24 24 C 1.46933 * 120.63202 * 180.02562 * 10 8 7 25 25 H 1.09004 * 109.47242 * 299.99746 * 1 2 3 26 26 H 1.09000 * 109.47237 * 60.00087 * 1 2 3 27 27 H 1.09002 * 109.46818 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47281 * 240.00284 * 2 1 3 29 29 H 1.08994 * 109.47037 * 60.00135 * 3 2 1 30 30 H 1.09003 * 109.46480 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46932 * 299.99494 * 3 2 1 32 32 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 33 33 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 36 36 H 1.09007 * 109.46846 * 299.99983 * 7 6 5 37 37 H 1.09007 * 109.47453 * 59.99610 * 7 6 5 38 38 H 1.08997 * 109.59422 * 246.20384 * 11 10 8 39 39 H 1.09001 * 109.58968 * 6.63764 * 11 10 8 40 40 H 1.09003 * 109.63660 * 294.86684 * 12 11 10 41 41 H 1.09002 * 109.46253 * 174.74455 * 12 11 10 42 42 H 1.09005 * 109.45535 * 178.49216 * 13 12 11 43 43 H 1.09001 * 109.44929 * 58.52944 * 13 12 11 44 44 H 0.96997 * 119.99922 * 180.02562 * 19 18 16 45 45 H 1.09006 * 109.57978 * 353.36637 * 24 10 8 46 46 H 1.08994 * 109.59132 * 113.79260 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1880 6 16 4.1695 -1.6865 2.6689 7 6 5.9657 -1.7181 2.4172 8 6 6.6243 -2.4094 3.5830 9 8 5.9485 -2.8383 4.4942 10 7 7.9642 -2.5503 3.6135 11 6 8.7958 -2.0407 2.5146 12 6 9.8767 -1.1227 3.1052 13 6 10.6546 -1.8858 4.1797 14 6 9.7033 -2.2957 5.3063 15 1 9.2366 -1.4064 5.7300 16 6 10.4760 -3.0188 6.3791 17 1 11.5400 -3.1687 6.2702 18 6 9.8247 -3.4889 7.4997 19 7 8.5292 -3.3059 7.6326 20 14 10.7825 -4.3858 8.8292 21 1 12.2145 -4.4598 8.4432 22 1 10.6539 -3.6509 10.1132 23 1 10.2407 -5.7592 8.9885 24 6 8.6208 -3.2226 4.7431 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6054 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.8532 -1.3938 0.3003 35 1 3.9995 0.1677 1.1421 36 1 6.1943 -2.2583 1.4984 37 1 6.3399 -0.6971 2.3410 38 1 9.2657 -2.8754 1.9944 39 1 8.1755 -1.4762 1.8184 40 1 9.4085 -0.2444 3.5497 41 1 10.5593 -0.8102 2.3149 42 1 11.4401 -1.2462 4.5825 43 1 11.1020 -2.7771 3.7398 44 1 8.0711 -3.6364 8.4212 45 1 7.8849 -3.4381 5.5177 46 1 9.0768 -4.1514 4.4006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:09 Heat of formation + Delta-G solvation = -65.322664 kcal Electronic energy + Delta-G solvation = -22186.191196 eV Core-core repulsion = 19007.876494 eV Total energy + Delta-G solvation = -3178.314701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.166 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.39265 -37.14221 -36.68292 -33.45203 -31.84510 -30.89500 -30.31907 -29.13791 -27.47419 -25.06638 -24.44536 -23.78528 -21.85575 -20.32129 -19.86386 -18.27689 -16.85736 -16.30531 -16.07794 -15.81536 -15.17438 -15.02750 -14.59275 -14.40841 -14.28564 -13.73138 -13.54893 -13.47071 -12.89523 -12.77474 -12.58985 -12.55815 -12.51357 -12.14014 -11.93217 -11.85052 -11.69229 -11.04927 -11.02452 -10.96703 -10.88321 -10.79873 -10.50695 -10.42865 -10.25196 -9.91983 -9.75745 -9.34373 -9.13513 -8.90794 -8.44020 -7.79720 -7.51343 -5.99525 -4.08783 1.55806 2.64523 3.16539 3.30476 3.38858 3.41622 3.71127 4.42989 4.47642 4.54859 4.65261 4.84724 4.89494 5.10650 5.13216 5.19466 5.30226 5.30984 5.32650 5.35196 5.38201 5.44653 5.51121 5.59746 5.61163 5.72122 5.73752 5.89105 5.93584 6.03453 6.09520 6.12263 6.27327 6.56659 6.64090 6.81964 6.95010 7.11565 7.25033 7.62952 7.85626 7.98582 8.20220 8.37856 8.80479 8.95820 9.57138 11.05717 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.002853 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.008793 B = 9813.088657 C =10556.322250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.097 4.097 5 C -0.109 4.109 6 S -0.186 6.186 7 C -0.123 4.123 8 C 0.520 3.480 9 O -0.516 6.516 10 N -0.603 5.603 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.113 3.887 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.264 0.736 45 H 0.124 0.876 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.418 7.321 -18.062 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.136 4.136 5 C -0.258 4.258 6 S 0.041 5.959 7 C -0.274 4.274 8 C 0.305 3.695 9 O -0.392 6.392 10 N -0.337 5.337 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.516 5.516 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.007 4.007 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.142 0.858 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.488 6.628 -16.567 20.698 hybrid contribution 1.425 0.072 -0.447 1.495 sum -9.063 6.701 -17.014 20.409 Atomic orbital electron populations 1.21836 0.94949 1.01881 1.01820 1.21121 0.95841 0.96354 0.97915 1.21919 1.01180 0.95902 1.01817 1.21354 0.92064 1.01641 0.98542 1.23584 0.99926 1.02891 0.99397 1.87596 1.02465 1.76798 1.29075 1.23594 0.96564 1.04914 1.02345 1.19503 0.82789 0.80568 0.86673 1.90759 1.62342 1.48827 1.37228 1.48450 1.04686 1.57635 1.22919 1.21752 0.93312 0.97408 0.89126 1.22024 0.97419 0.98635 0.99112 1.21630 0.98495 0.98510 0.96221 1.18983 0.91758 0.95544 0.91650 0.95307 1.21100 0.94524 1.37334 1.03051 0.92294 1.25067 0.94929 0.95936 0.98155 1.69894 1.07732 1.45437 1.28576 0.86536 0.80096 0.79545 0.81837 1.19807 1.20995 1.20946 1.22343 0.97985 0.94077 0.86258 0.92526 0.92687 0.92570 0.91165 0.92454 0.92511 0.92803 0.90932 0.90845 0.90490 0.90127 0.88012 0.87867 0.91824 0.91409 0.92105 0.92214 0.92952 0.93143 0.92635 0.85835 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 2 C -0.09 -0.66 2.92 -90.62 -0.26 -0.93 16 3 C -0.15 -1.04 8.95 37.16 0.33 -0.71 16 4 C -0.10 -0.88 4.69 -26.73 -0.13 -1.00 16 5 C -0.11 -1.10 5.70 37.16 0.21 -0.89 16 6 S -0.19 -2.80 20.87 -107.50 -2.24 -5.05 16 7 C -0.12 -1.79 4.77 36.00 0.17 -1.62 16 8 C 0.52 10.50 7.72 -10.99 -0.08 10.42 16 9 O -0.52 -12.93 15.28 5.56 0.08 -12.84 16 10 N -0.60 -11.99 2.97 -172.48 -0.51 -12.50 16 11 C 0.11 1.61 6.37 -3.48 -0.02 1.59 16 12 C -0.13 -2.08 6.10 -26.38 -0.16 -2.24 16 13 C -0.11 -2.17 5.10 -26.69 -0.14 -2.30 16 14 C 0.04 0.98 2.25 -91.63 -0.21 0.77 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.12 8.56 -34.44 -0.29 -14.41 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.88 -25.86 11.39 55.43 0.63 -25.23 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.11 2.75 5.40 -3.69 -0.02 2.73 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.08 0.74 6.57 -51.92 -0.34 0.40 16 36 H 0.10 1.21 7.93 -51.92 -0.41 0.80 16 37 H 0.10 1.29 7.70 -51.92 -0.40 0.89 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.12 3.53 5.12 -51.93 -0.27 3.27 16 46 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -31.66 370.54 -10.20 -41.86 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.37 Total: -0.57 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.35 Total: -7.58 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.12 Total: -37.72 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.24 Total: -5.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.66 -10.20 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.466 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds