Wall clock time and date at job start Fri Apr 10 2020 20:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46668 * 2 1 4 4 C 1.53001 * 109.47194 * 119.99429 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 S 1.81404 * 109.46946 * 180.02562 * 5 4 2 7 7 C 1.81397 * 103.00143 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47452 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99941 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00090 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.63127 * 359.71062 * 10 8 7 12 12 C 1.53627 * 108.53869 * 126.37459 * 11 10 8 13 13 C 1.53042 * 109.24318 * 54.85842 * 12 11 10 14 14 C 1.53038 * 109.53879 * 298.50896 * 13 12 11 15 15 H 1.09000 * 109.49987 * 301.41848 * 14 13 12 16 16 C 1.50697 * 109.49987 * 181.31755 * 14 13 12 17 17 H 1.08003 * 119.99814 * 0.16215 * 16 14 13 18 18 C 1.37870 * 120.00131 * 180.16506 * 16 14 13 19 19 N 1.31516 * 120.00289 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00059 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47158 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47130 * 119.99886 * 20 18 16 23 23 H 1.48498 * 109.47142 * 239.99916 * 20 18 16 24 24 C 1.46933 * 120.63202 * 180.02562 * 10 8 7 25 25 H 1.09004 * 109.47242 * 299.99746 * 1 2 3 26 26 H 1.09000 * 109.47237 * 60.00087 * 1 2 3 27 27 H 1.09002 * 109.46818 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47281 * 240.00284 * 2 1 3 29 29 H 1.08994 * 109.47037 * 60.00135 * 3 2 1 30 30 H 1.09003 * 109.46480 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46932 * 299.99494 * 3 2 1 32 32 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 33 33 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 36 36 H 1.09007 * 109.46846 * 299.99983 * 7 6 5 37 37 H 1.09007 * 109.47453 * 59.99610 * 7 6 5 38 38 H 1.08997 * 109.59422 * 246.20384 * 11 10 8 39 39 H 1.09001 * 109.58968 * 6.63764 * 11 10 8 40 40 H 1.09003 * 109.63660 * 294.86684 * 12 11 10 41 41 H 1.09002 * 109.46253 * 174.74455 * 12 11 10 42 42 H 1.09005 * 109.45535 * 178.49216 * 13 12 11 43 43 H 1.09001 * 109.44929 * 58.52944 * 13 12 11 44 44 H 0.96997 * 119.99922 * 180.02562 * 19 18 16 45 45 H 1.09006 * 109.57978 * 353.36637 * 24 10 8 46 46 H 1.08994 * 109.59132 * 113.79260 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1880 6 16 4.1695 -1.6865 2.6689 7 6 5.9657 -1.7181 2.4172 8 6 6.6243 -2.4094 3.5830 9 8 5.9485 -2.8383 4.4942 10 7 7.9642 -2.5503 3.6135 11 6 8.7958 -2.0407 2.5146 12 6 9.8767 -1.1227 3.1052 13 6 10.6546 -1.8858 4.1797 14 6 9.7033 -2.2957 5.3063 15 1 9.2366 -1.4064 5.7300 16 6 10.4760 -3.0188 6.3791 17 1 11.5400 -3.1687 6.2702 18 6 9.8247 -3.4889 7.4997 19 7 8.5292 -3.3059 7.6326 20 14 10.7825 -4.3858 8.8292 21 1 12.2145 -4.4598 8.4432 22 1 10.6539 -3.6509 10.1132 23 1 10.2407 -5.7592 8.9885 24 6 8.6208 -3.2226 4.7431 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6054 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.8532 -1.3938 0.3003 35 1 3.9995 0.1677 1.1421 36 1 6.1943 -2.2583 1.4984 37 1 6.3399 -0.6971 2.3410 38 1 9.2657 -2.8754 1.9944 39 1 8.1755 -1.4762 1.8184 40 1 9.4085 -0.2444 3.5497 41 1 10.5593 -0.8102 2.3149 42 1 11.4401 -1.2462 4.5825 43 1 11.1020 -2.7771 3.7398 44 1 8.0711 -3.6364 8.4212 45 1 7.8849 -3.4381 5.5177 46 1 9.0768 -4.1514 4.4006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:08 Heat of formation + Delta-G solvation = -83.047136 kcal Electronic energy + Delta-G solvation = -22186.959786 eV Core-core repulsion = 19007.876494 eV Total energy + Delta-G solvation = -3179.083292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.166 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.97788 -38.35032 -37.74829 -35.35291 -33.55126 -31.91972 -31.56701 -30.62205 -27.98877 -26.98877 -25.94560 -24.62654 -23.45210 -21.60787 -20.84791 -19.81360 -18.59225 -17.95625 -17.47569 -16.76413 -16.56662 -16.36506 -16.21441 -15.27417 -15.24954 -15.10490 -14.87454 -14.61917 -14.33910 -14.26301 -13.96621 -13.58925 -13.51239 -13.37471 -13.08995 -12.92889 -12.72329 -12.67411 -12.36879 -12.29370 -12.23370 -11.84803 -11.65005 -11.62515 -11.54409 -11.45011 -11.14750 -10.96695 -10.80345 -10.66459 -10.53209 -9.44627 -8.67541 -8.12412 -6.29843 0.48879 1.38257 1.39790 1.51846 1.64926 1.66234 2.21555 2.41173 3.15759 3.53753 3.82112 3.90693 4.02343 4.05566 4.07793 4.17357 4.21260 4.25645 4.33374 4.50908 4.59693 4.60297 4.73112 4.79729 4.80080 4.83621 4.85869 4.92455 5.05189 5.09722 5.12489 5.13442 5.24879 5.27296 5.32873 5.34799 5.47431 5.52770 5.53530 5.62133 5.88551 5.98859 6.31367 6.60540 6.83795 7.26755 7.40903 8.90933 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.002853 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.008793 B = 9813.088657 C =10556.322250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.151 4.151 4 C -0.097 4.097 5 C -0.083 4.083 6 S -0.271 6.271 7 C -0.099 4.099 8 C 0.507 3.493 9 O -0.579 6.579 10 N -0.606 5.606 11 C 0.101 3.899 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.038 3.962 15 H -0.015 1.015 16 C -0.534 4.534 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.916 5.916 20 Si 0.958 3.042 21 H -0.259 1.259 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.126 3.874 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.051 0.949 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.259 0.741 45 H 0.074 0.926 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 8.411 -21.584 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.136 4.136 5 C -0.231 4.231 6 S -0.045 6.045 7 C -0.249 4.249 8 C 0.295 3.705 9 O -0.459 6.459 10 N -0.339 5.339 11 C -0.020 4.020 12 C -0.165 4.165 13 C -0.144 4.144 14 C 0.019 3.981 15 H 0.003 0.997 16 C -0.573 4.573 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.555 5.555 20 Si 0.783 3.217 21 H -0.183 1.183 22 H -0.209 1.209 23 H -0.209 1.209 24 C 0.003 3.997 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.331 7.741 -20.137 23.505 hybrid contribution 1.048 -0.236 0.622 1.242 sum -8.283 7.505 -19.515 22.489 Atomic orbital electron populations 1.21844 0.94632 1.01946 1.02137 1.21089 0.96090 0.96437 0.96993 1.21928 1.01347 0.95532 1.02042 1.21372 0.91661 1.01350 0.99175 1.23608 0.99911 1.02929 0.96618 1.87997 1.04309 1.78375 1.33791 1.23432 0.94941 1.06040 1.00488 1.20510 0.82591 0.79870 0.87566 1.90733 1.63770 1.51363 1.40019 1.48469 1.05352 1.57138 1.22926 1.22179 0.93334 0.98486 0.88036 1.21993 0.97881 0.97661 0.98918 1.21525 0.97715 0.99423 0.95748 1.18916 0.92600 0.93497 0.93104 0.99705 1.21560 0.94928 1.36885 1.03922 0.91884 1.25926 0.95652 0.96930 1.00686 1.70104 1.09506 1.46889 1.28974 0.85505 0.79312 0.78018 0.78842 1.18263 1.20902 1.20915 1.21715 0.96695 0.94279 0.87006 0.93013 0.91587 0.92679 0.90140 0.93109 0.92209 0.91773 0.91718 0.92083 0.88469 0.88613 0.84242 0.84980 0.89831 0.86816 0.93009 0.87557 0.93015 0.92367 0.93207 0.90783 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.19 71.98 0.66 -1.04 16 2 C -0.09 -1.03 2.92 -10.79 -0.03 -1.07 16 3 C -0.15 -1.69 8.95 71.98 0.64 -1.04 16 4 C -0.10 -1.61 4.69 30.59 0.14 -1.47 16 5 C -0.08 -1.44 5.70 71.98 0.41 -1.03 16 6 S -0.27 -8.03 20.87 -56.49 -1.18 -9.21 16 7 C -0.10 -2.61 4.77 71.23 0.34 -2.28 16 8 C 0.51 20.56 7.72 87.66 0.68 21.23 16 9 O -0.58 -30.65 15.28 -3.03 -0.05 -30.70 16 10 N -0.61 -23.80 2.97 -817.99 -2.43 -26.23 16 11 C 0.10 2.63 6.37 86.51 0.55 3.18 16 12 C -0.13 -3.50 6.10 30.82 0.19 -3.31 16 13 C -0.11 -4.02 5.10 30.62 0.16 -3.86 16 14 C 0.04 1.93 2.25 -11.45 -0.03 1.90 16 15 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 16 C -0.53 -29.69 8.56 25.60 0.22 -29.47 16 17 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 18 C 0.01 0.42 5.30 84.65 0.45 0.86 16 19 N -0.92 -56.95 11.39 21.45 0.24 -56.71 16 20 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 C 0.13 6.32 5.40 86.37 0.47 6.79 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.63 6.57 -2.39 -0.02 0.61 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.42 6.57 -2.39 -0.02 1.40 16 36 H 0.14 2.66 7.93 -2.39 -0.02 2.64 16 37 H 0.13 2.76 7.70 -2.39 -0.02 2.74 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.11 1.96 5.93 -2.39 -0.01 1.95 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.07 4.53 5.12 -2.38 -0.01 4.51 16 46 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -76.68 370.54 4.39 -72.29 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.92 Total: 14.17 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.85 Total: -10.58 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -2.18 Total: -82.94 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.05 Total: -30.70 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.18 Total: -9.21 kcal Total: -76.68 4.39 -72.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.755 kcal (2) G-P(sol) polarization free energy of solvation -76.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds