Wall clock time and date at job start Fri Apr 10 2020 20:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47315 * 2 1 4 4 C 1.52998 * 109.47208 * 119.99891 * 2 1 3 5 5 C 1.52998 * 109.47501 * 175.00126 * 4 2 1 6 6 S 1.81400 * 109.47388 * 180.02562 * 5 4 2 7 7 C 1.81399 * 103.00249 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 12 12 C 1.53188 * 108.77495 * 233.58614 * 11 10 8 13 13 C 1.53034 * 109.31404 * 305.36890 * 12 11 10 14 14 C 1.53346 * 109.61010 * 61.37429 * 13 12 11 15 15 H 1.09002 * 109.47277 * 58.54691 * 14 13 12 16 16 C 1.50698 * 109.68835 * 178.74685 * 14 13 12 17 17 H 1.08009 * 119.99739 * 359.75029 * 16 14 13 18 18 C 1.37876 * 120.00334 * 179.75168 * 16 14 13 19 19 N 1.31517 * 119.99819 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00035 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47523 * 89.99881 * 20 18 16 22 22 H 1.48500 * 109.46942 * 210.00260 * 20 18 16 23 23 H 1.48506 * 109.47413 * 329.99809 * 20 18 16 24 24 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 25 25 H 1.08999 * 109.47253 * 300.00075 * 1 2 3 26 26 H 1.09010 * 109.47050 * 60.00223 * 1 2 3 27 27 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47253 * 239.99924 * 2 1 3 29 29 H 1.08998 * 109.47719 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47305 * 300.00309 * 3 2 1 31 31 H 1.08999 * 109.47022 * 59.99783 * 3 2 1 32 32 H 1.09003 * 109.47104 * 54.99703 * 4 2 1 33 33 H 1.08998 * 109.47216 * 295.00313 * 4 2 1 34 34 H 1.08999 * 109.47059 * 60.00139 * 5 4 2 35 35 H 1.09004 * 109.46649 * 300.00116 * 5 4 2 36 36 H 1.09001 * 109.46570 * 59.99766 * 7 6 5 37 37 H 1.09001 * 109.47092 * 300.00014 * 7 6 5 38 38 H 1.08994 * 109.58580 * 353.38021 * 11 10 8 39 39 H 1.09002 * 109.58042 * 113.80101 * 11 10 8 40 40 H 1.08994 * 109.49494 * 65.32533 * 12 11 10 41 41 H 1.09000 * 109.49460 * 185.41816 * 12 11 10 42 42 H 1.08999 * 109.45836 * 181.38851 * 13 12 11 43 43 H 1.09000 * 109.46169 * 301.34220 * 13 12 11 44 44 H 0.96996 * 119.99912 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.58751 * 246.20189 * 24 10 8 46 46 H 1.08996 * 109.58750 * 6.48373 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 16 4.1694 -1.6868 2.6688 7 6 5.9654 -1.7197 2.4165 8 6 6.6240 -2.4102 3.5828 9 8 5.9482 -2.8384 4.4943 10 7 7.9640 -2.5519 3.6130 11 6 8.7960 -2.0379 2.5164 12 6 9.6854 -3.1727 1.9988 13 6 10.4790 -3.7659 3.1651 14 6 9.5115 -4.3462 4.2036 15 1 8.8905 -5.1097 3.7349 16 6 10.2918 -4.9583 5.3383 17 1 11.3716 -4.9412 5.3221 18 6 9.6274 -5.5402 6.3970 19 7 8.3125 -5.5615 6.4164 20 14 10.5947 -6.2982 7.8038 21 1 10.8410 -5.2696 8.8460 22 1 9.8188 -7.4207 8.3897 23 1 11.8933 -6.8072 7.2940 24 6 8.6206 -3.2223 4.7436 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1369 34 1 3.9994 0.1675 1.1422 35 1 3.8531 -1.3940 0.3003 36 1 6.3403 -0.6990 2.3400 37 1 6.1934 -2.2603 1.4978 38 1 8.1566 -1.6781 1.7105 39 1 9.4199 -1.2225 2.8825 40 1 9.0631 -3.9472 1.5508 41 1 10.3753 -2.7818 1.2509 42 1 11.1311 -4.5572 2.7953 43 1 11.0825 -2.9852 3.6281 44 1 7.8451 -5.9712 7.1611 45 1 9.2302 -2.5032 5.2908 46 1 7.8654 -3.6418 5.4083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:12 Heat of formation + Delta-G solvation = -65.363928 kcal Electronic energy + Delta-G solvation = -22177.196608 eV Core-core repulsion = 18998.880117 eV Total energy + Delta-G solvation = -3178.316491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.39365 -37.14495 -36.68292 -33.44833 -31.84726 -30.89607 -30.32913 -29.14148 -27.48084 -25.06886 -24.44358 -23.78496 -21.84861 -20.32301 -19.87191 -18.27240 -16.85716 -16.30638 -16.07833 -15.81274 -15.19038 -15.00527 -14.61885 -14.38265 -14.29388 -13.74202 -13.66460 -13.30522 -12.96734 -12.79026 -12.59456 -12.53253 -12.51875 -12.11367 -11.97214 -11.83414 -11.69468 -11.05212 -11.02476 -10.94903 -10.88362 -10.79757 -10.52941 -10.42922 -10.25457 -9.92138 -9.75740 -9.34572 -9.12588 -8.91358 -8.44001 -7.79758 -7.51327 -5.99385 -4.08691 1.55803 2.64537 3.16539 3.31323 3.38686 3.40731 3.71061 4.42993 4.47525 4.54763 4.65026 4.84586 4.89349 5.10492 5.12950 5.19358 5.30229 5.30776 5.32580 5.35102 5.38072 5.45370 5.50947 5.58985 5.61467 5.71536 5.73546 5.89108 5.93486 6.03171 6.09130 6.12219 6.27467 6.56673 6.64016 6.81840 6.94261 7.11402 7.25196 7.62690 7.85621 7.98521 8.20141 8.37991 8.80464 8.95645 9.57092 11.05857 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.002839 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.349237 B = 9861.134776 C =10632.209453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.097 4.097 5 C -0.110 4.110 6 S -0.186 6.186 7 C -0.123 4.123 8 C 0.520 3.480 9 O -0.516 6.516 10 N -0.603 5.603 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.112 4.112 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.879 5.879 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.113 3.887 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.264 0.736 45 H 0.043 0.957 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 12.951 -15.014 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.136 4.136 5 C -0.258 4.258 6 S 0.041 5.959 7 C -0.274 4.274 8 C 0.305 3.695 9 O -0.391 6.391 10 N -0.337 5.337 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.516 5.516 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.007 4.007 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.968 12.238 -13.528 20.788 hybrid contribution 1.440 0.131 -0.422 1.506 sum -8.528 12.369 -13.950 20.501 Atomic orbital electron populations 1.21834 0.94942 1.01916 1.01792 1.21120 0.95850 0.96325 0.97958 1.21914 1.01154 0.95928 1.01789 1.21354 0.92073 1.01682 0.98489 1.23583 0.99921 1.02798 0.99499 1.87595 1.02534 1.76851 1.28951 1.23593 0.96551 1.04700 1.02569 1.19504 0.82758 0.80475 0.86789 1.90759 1.62270 1.48508 1.37603 1.48444 1.04777 1.57422 1.23029 1.21661 0.93936 0.96583 0.89387 1.21943 0.98562 0.97898 0.98805 1.21680 0.98421 0.99277 0.95544 1.19033 0.92676 0.92850 0.93283 0.95312 1.21054 0.92874 1.37439 1.04690 0.92349 1.25064 0.94908 0.95758 0.98344 1.69884 1.06392 1.43815 1.31551 0.86583 0.79929 0.78978 0.82457 1.20629 1.21178 1.19948 1.22342 0.98079 0.93488 0.86811 0.92547 0.92694 0.92536 0.91127 0.92530 0.92798 0.92503 0.90877 0.90900 0.90186 0.90430 0.88013 0.87864 0.91420 0.91858 0.92120 0.92167 0.92963 0.93144 0.92573 0.93906 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 2 C -0.09 -0.67 2.92 -90.62 -0.26 -0.93 16 3 C -0.15 -1.01 8.95 37.16 0.33 -0.68 16 4 C -0.10 -0.88 4.69 -26.73 -0.13 -1.00 16 5 C -0.11 -1.10 5.70 37.16 0.21 -0.89 16 6 S -0.19 -2.80 20.87 -107.50 -2.24 -5.05 16 7 C -0.12 -1.79 4.77 36.00 0.17 -1.61 16 8 C 0.52 10.51 7.72 -10.99 -0.08 10.43 16 9 O -0.52 -12.93 15.28 5.56 0.08 -12.84 16 10 N -0.60 -11.99 2.97 -172.74 -0.51 -12.50 16 11 C 0.11 1.62 6.34 -3.71 -0.02 1.60 16 12 C -0.13 -2.09 6.08 -26.62 -0.16 -2.25 16 13 C -0.11 -2.18 5.13 -26.53 -0.14 -2.32 16 14 C 0.04 1.00 2.27 -91.46 -0.21 0.80 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.14 8.57 -34.44 -0.30 -14.43 16 17 H 0.06 1.54 7.75 -52.48 -0.41 1.14 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -25.87 11.39 55.43 0.63 -25.24 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.11 2.74 5.40 -3.68 -0.02 2.72 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.72 6.56 -51.92 -0.34 0.37 16 35 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.10 1.21 7.94 -51.92 -0.41 0.80 16 37 H 0.10 1.29 7.69 -51.92 -0.40 0.89 16 38 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.12 3.53 5.12 -51.93 -0.27 3.26 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -31.64 370.54 -10.21 -41.85 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -8.37 Total: -0.56 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.36 Total: -7.57 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.12 Total: -37.75 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.24 Total: -5.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.64 -10.21 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.516 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds