Wall clock time and date at job start Fri Apr 10 2020 20:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47315 * 2 1 4 4 C 1.52998 * 109.47208 * 119.99891 * 2 1 3 5 5 C 1.52998 * 109.47501 * 175.00126 * 4 2 1 6 6 S 1.81400 * 109.47388 * 180.02562 * 5 4 2 7 7 C 1.81399 * 103.00249 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 12 12 C 1.53188 * 108.77495 * 233.58614 * 11 10 8 13 13 C 1.53034 * 109.31404 * 305.36890 * 12 11 10 14 14 C 1.53346 * 109.61010 * 61.37429 * 13 12 11 15 15 H 1.09002 * 109.47277 * 58.54691 * 14 13 12 16 16 C 1.50698 * 109.68835 * 178.74685 * 14 13 12 17 17 H 1.08009 * 119.99739 * 359.75029 * 16 14 13 18 18 C 1.37876 * 120.00334 * 179.75168 * 16 14 13 19 19 N 1.31517 * 119.99819 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00035 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47523 * 89.99881 * 20 18 16 22 22 H 1.48500 * 109.46942 * 210.00260 * 20 18 16 23 23 H 1.48506 * 109.47413 * 329.99809 * 20 18 16 24 24 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 25 25 H 1.08999 * 109.47253 * 300.00075 * 1 2 3 26 26 H 1.09010 * 109.47050 * 60.00223 * 1 2 3 27 27 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47253 * 239.99924 * 2 1 3 29 29 H 1.08998 * 109.47719 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47305 * 300.00309 * 3 2 1 31 31 H 1.08999 * 109.47022 * 59.99783 * 3 2 1 32 32 H 1.09003 * 109.47104 * 54.99703 * 4 2 1 33 33 H 1.08998 * 109.47216 * 295.00313 * 4 2 1 34 34 H 1.08999 * 109.47059 * 60.00139 * 5 4 2 35 35 H 1.09004 * 109.46649 * 300.00116 * 5 4 2 36 36 H 1.09001 * 109.46570 * 59.99766 * 7 6 5 37 37 H 1.09001 * 109.47092 * 300.00014 * 7 6 5 38 38 H 1.08994 * 109.58580 * 353.38021 * 11 10 8 39 39 H 1.09002 * 109.58042 * 113.80101 * 11 10 8 40 40 H 1.08994 * 109.49494 * 65.32533 * 12 11 10 41 41 H 1.09000 * 109.49460 * 185.41816 * 12 11 10 42 42 H 1.08999 * 109.45836 * 181.38851 * 13 12 11 43 43 H 1.09000 * 109.46169 * 301.34220 * 13 12 11 44 44 H 0.96996 * 119.99912 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.58751 * 246.20189 * 24 10 8 46 46 H 1.08996 * 109.58750 * 6.48373 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 16 4.1694 -1.6868 2.6688 7 6 5.9654 -1.7197 2.4165 8 6 6.6240 -2.4102 3.5828 9 8 5.9482 -2.8384 4.4943 10 7 7.9640 -2.5519 3.6130 11 6 8.7960 -2.0379 2.5164 12 6 9.6854 -3.1727 1.9988 13 6 10.4790 -3.7659 3.1651 14 6 9.5115 -4.3462 4.2036 15 1 8.8905 -5.1097 3.7349 16 6 10.2918 -4.9583 5.3383 17 1 11.3716 -4.9412 5.3221 18 6 9.6274 -5.5402 6.3970 19 7 8.3125 -5.5615 6.4164 20 14 10.5947 -6.2982 7.8038 21 1 10.8410 -5.2696 8.8460 22 1 9.8188 -7.4207 8.3897 23 1 11.8933 -6.8072 7.2940 24 6 8.6206 -3.2223 4.7436 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1369 34 1 3.9994 0.1675 1.1422 35 1 3.8531 -1.3940 0.3003 36 1 6.3403 -0.6990 2.3400 37 1 6.1934 -2.2603 1.4978 38 1 8.1566 -1.6781 1.7105 39 1 9.4199 -1.2225 2.8825 40 1 9.0631 -3.9472 1.5508 41 1 10.3753 -2.7818 1.2509 42 1 11.1311 -4.5572 2.7953 43 1 11.0825 -2.9852 3.6281 44 1 7.8451 -5.9712 7.1611 45 1 9.2302 -2.5032 5.2908 46 1 7.8654 -3.6418 5.4083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:12 Heat of formation + Delta-G solvation = -83.086661 kcal Electronic energy + Delta-G solvation = -22177.965123 eV Core-core repulsion = 18998.880117 eV Total energy + Delta-G solvation = -3179.085006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97881 -38.34864 -37.74912 -35.35245 -33.54816 -31.93472 -31.56888 -30.62484 -27.98639 -26.99063 -25.94571 -24.62718 -23.44543 -21.61564 -20.84899 -19.80857 -18.59064 -17.95584 -17.47600 -16.75612 -16.59842 -16.33009 -16.22693 -15.31734 -15.21326 -15.07367 -14.93845 -14.60572 -14.32520 -14.16523 -14.08681 -13.54518 -13.53229 -13.37517 -13.08509 -12.90160 -12.72037 -12.68447 -12.36914 -12.30526 -12.25557 -11.84329 -11.65194 -11.62348 -11.54423 -11.44987 -11.14399 -10.96482 -10.80493 -10.67028 -10.52584 -9.44817 -8.67578 -8.12315 -6.29808 0.48805 1.39565 1.39677 1.50851 1.64863 1.66158 2.21486 2.41222 3.15766 3.53644 3.82052 3.90740 4.02034 4.05704 4.07797 4.17997 4.21171 4.25554 4.33032 4.51152 4.59615 4.60211 4.73437 4.79773 4.80105 4.83805 4.85636 4.92225 5.05346 5.09636 5.12475 5.13599 5.24325 5.27402 5.32977 5.34729 5.47701 5.52723 5.53329 5.61996 5.88380 5.98547 6.31343 6.60478 6.83602 7.26698 7.40838 8.90882 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.002839 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.349237 B = 9861.134776 C =10632.209453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.097 4.097 5 C -0.083 4.083 6 S -0.271 6.271 7 C -0.098 4.098 8 C 0.507 3.493 9 O -0.579 6.579 10 N -0.606 5.606 11 C 0.101 3.899 12 C -0.127 4.127 13 C -0.107 4.107 14 C 0.039 3.961 15 H -0.015 1.015 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.916 5.916 20 Si 0.958 3.042 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.125 3.875 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.107 0.893 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.259 0.741 45 H 0.037 0.963 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 15.066 -17.975 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.136 4.136 5 C -0.231 4.231 6 S -0.045 6.045 7 C -0.249 4.249 8 C 0.295 3.705 9 O -0.459 6.459 10 N -0.339 5.339 11 C -0.020 4.020 12 C -0.165 4.165 13 C -0.145 4.145 14 C 0.019 3.981 15 H 0.003 0.997 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.555 5.555 20 Si 0.783 3.217 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.185 1.185 24 C 0.003 3.997 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.703 14.376 -16.537 23.578 hybrid contribution 1.028 -0.516 0.461 1.240 sum -7.675 13.860 -16.076 22.571 Atomic orbital electron populations 1.21842 0.94644 1.01896 1.02180 1.21089 0.96089 0.96541 0.96948 1.21919 1.01368 0.95388 1.02090 1.21371 0.91654 1.01284 0.99244 1.23607 0.99929 1.02958 0.96571 1.87997 1.04399 1.78492 1.33575 1.23431 0.94970 1.06222 1.00273 1.20511 0.82546 0.79782 0.87689 1.90733 1.63684 1.51064 1.40388 1.48464 1.05449 1.56810 1.23148 1.22089 0.94334 0.96658 0.88948 1.21916 0.98866 0.97828 0.97861 1.21576 0.97671 0.99478 0.95727 1.18968 0.93100 0.92064 0.93936 0.99709 1.21524 0.93332 1.37097 1.05431 0.91887 1.25927 0.95651 0.96466 1.01137 1.70098 1.08192 1.45007 1.32170 0.85552 0.78821 0.78006 0.79287 1.20019 1.21424 1.18549 1.21714 0.96628 0.93433 0.87962 0.92884 0.91596 0.92813 0.90323 0.92146 0.91810 0.92966 0.91945 0.91857 0.88308 0.88784 0.84253 0.84964 0.86825 0.89859 0.93018 0.87493 0.93022 0.92364 0.93196 0.94500 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.19 71.98 0.66 -1.05 16 2 C -0.09 -1.04 2.92 -10.80 -0.03 -1.08 16 3 C -0.15 -1.60 8.95 71.98 0.64 -0.96 16 4 C -0.10 -1.61 4.69 30.59 0.14 -1.47 16 5 C -0.08 -1.44 5.70 71.98 0.41 -1.03 16 6 S -0.27 -8.03 20.87 -56.49 -1.18 -9.21 16 7 C -0.10 -2.61 4.77 71.24 0.34 -2.27 16 8 C 0.51 20.57 7.72 87.66 0.68 21.25 16 9 O -0.58 -30.66 15.28 -3.03 -0.05 -30.71 16 10 N -0.61 -23.82 2.97 -818.81 -2.43 -26.25 16 11 C 0.10 2.64 6.34 86.36 0.55 3.18 16 12 C -0.13 -3.50 6.08 30.67 0.19 -3.31 16 13 C -0.11 -4.03 5.13 30.72 0.16 -3.87 16 14 C 0.04 1.96 2.27 -11.34 -0.03 1.93 16 15 H -0.02 -0.90 8.14 -2.39 -0.02 -0.91 16 16 C -0.54 -29.75 8.57 25.60 0.22 -29.54 16 17 H 0.06 3.35 7.75 -2.91 -0.02 3.33 16 18 C 0.01 0.43 5.30 84.65 0.45 0.88 16 19 N -0.92 -57.00 11.39 21.45 0.24 -56.76 16 20 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 24 C 0.13 6.31 5.40 86.38 0.47 6.77 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.62 8.14 -2.38 -0.02 0.61 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.60 6.56 -2.39 -0.02 0.58 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.39 6.56 -2.39 -0.02 1.38 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.14 2.66 7.94 -2.39 -0.02 2.64 16 37 H 0.13 2.76 7.69 -2.39 -0.02 2.74 16 38 H 0.11 1.96 5.93 -2.39 -0.01 1.95 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.07 4.52 5.12 -2.39 -0.01 4.51 16 Total: -1.00 -76.67 370.54 4.38 -72.30 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.92 Total: 14.24 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 4.84 Total: -10.57 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.19 Total: -83.01 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.18 Total: -9.21 kcal Total: -76.67 4.38 -72.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.790 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds