Wall clock time and date at job start Fri Apr 10 2020 20:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47194 * 2 1 4 4 C 1.52999 * 109.47194 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.37099 * 119.99611 * 265.60210 * 5 4 3 7 7 H 1.08008 * 119.99927 * 141.85912 * 6 5 4 8 8 C 1.38942 * 120.00480 * 321.85460 * 6 5 4 9 9 N 1.31418 * 120.00476 * 159.77029 * 8 6 5 10 10 Si 1.86805 * 120.00169 * 339.77162 * 8 6 5 11 11 H 1.48502 * 109.47029 * 91.72602 * 10 8 6 12 12 H 1.48494 * 109.47375 * 211.73083 * 10 8 6 13 13 H 1.48502 * 109.46749 * 331.73078 * 10 8 6 14 14 C 1.34769 * 120.00041 * 85.60600 * 5 4 3 15 15 O 1.21292 * 120.00281 * 5.62205 * 14 5 4 16 16 C 1.50708 * 119.99808 * 185.62812 * 14 5 4 17 17 C 1.53260 * 109.57336 * 152.37656 * 16 14 5 18 18 O 1.43096 * 108.94150 * 174.33065 * 17 16 14 19 19 C 1.42969 * 113.76785 * 302.02703 * 18 17 16 20 20 C 1.52996 * 109.46942 * 178.79489 * 19 18 17 21 21 C 1.53001 * 109.47363 * 59.99995 * 20 19 18 22 22 C 1.52996 * 109.47137 * 180.02562 * 20 19 18 23 23 O 1.42971 * 109.47180 * 58.79707 * 19 18 17 24 24 C 1.43098 * 113.76424 * 301.20576 * 23 19 18 25 25 H 1.08999 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47036 * 300.00132 * 1 2 3 27 27 H 1.08995 * 109.47154 * 60.00105 * 1 2 3 28 28 H 1.08999 * 109.47036 * 239.99868 * 2 1 3 29 29 H 1.09001 * 109.47221 * 119.99435 * 2 1 3 30 30 H 1.08999 * 109.47237 * 59.99991 * 3 2 1 31 31 H 1.09001 * 109.46575 * 299.99830 * 3 2 1 32 32 H 1.08999 * 109.47036 * 59.99868 * 4 3 2 33 33 H 1.08995 * 109.47154 * 299.99895 * 4 3 2 34 34 H 0.97001 * 119.99976 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.67900 * 32.05430 * 16 14 5 36 36 H 1.09002 * 109.55806 * 294.16348 * 17 16 14 37 37 H 1.08995 * 109.56318 * 54.49086 * 17 16 14 38 38 H 1.08999 * 109.47039 * 298.79711 * 19 18 17 39 39 H 1.08999 * 109.47435 * 299.99980 * 20 19 18 40 40 H 1.09003 * 109.46448 * 59.99894 * 21 20 19 41 41 H 1.09001 * 109.46950 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47296 * 300.00284 * 21 20 19 43 43 H 1.09001 * 109.47323 * 60.00083 * 22 20 19 44 44 H 1.09001 * 109.47591 * 179.97438 * 22 20 19 45 45 H 1.09002 * 109.47630 * 299.99786 * 22 20 19 46 46 H 1.08997 * 109.55543 * 298.12471 * 24 23 19 47 47 H 1.09005 * 109.55585 * 177.81012 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3721 3.4393 -1.1854 7 1 4.1386 4.4839 -1.3296 8 6 4.9906 2.7193 -2.2002 9 7 4.9385 3.1532 -3.4396 10 14 5.8963 1.1346 -1.8028 11 1 4.9669 -0.0151 -1.9425 12 1 7.0356 0.9670 -2.7404 13 1 6.4064 1.1922 -0.4093 14 6 4.1991 3.4892 1.1622 15 8 4.0199 2.9145 2.2152 16 6 4.5790 4.9476 1.1548 17 6 4.0289 5.6278 2.4132 18 8 4.5075 6.9756 2.4596 19 6 5.9333 7.0812 2.4543 20 6 6.3353 8.5573 2.4755 21 6 5.7796 9.2191 3.7381 22 6 7.8611 8.6704 2.4692 23 8 6.4526 6.4628 1.2745 24 6 6.1058 5.0803 1.1477 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 5.3701 2.6503 -4.1480 35 1 4.1663 5.4300 0.2688 36 1 2.9394 5.6285 2.3810 37 1 4.3690 5.0892 3.2976 38 1 6.3379 6.5817 3.3345 39 1 5.9307 9.0568 1.5953 40 1 6.1843 8.7196 4.6183 41 1 6.0664 10.2706 3.7534 42 1 4.6926 9.1386 3.7422 43 1 8.2567 8.1990 1.5695 44 1 8.1476 9.7220 2.4839 45 1 8.2662 8.1708 3.3492 46 1 6.5248 4.5209 1.9842 47 1 6.5017 4.6893 0.2104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183175813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:28 Heat of formation + Delta-G solvation = -145.414200 kcal Electronic energy + Delta-G solvation = -26112.553837 eV Core-core repulsion = 22488.013235 eV Total energy + Delta-G solvation = -3624.540602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09830 -38.70302 -35.82062 -35.35580 -35.09596 -34.10406 -31.97554 -31.64906 -28.60447 -27.17984 -25.60630 -25.46771 -24.87605 -23.63193 -21.25831 -20.69665 -20.36949 -19.06726 -17.33072 -16.98277 -16.59315 -16.11554 -15.53793 -15.32152 -14.86422 -14.58036 -14.41501 -13.92185 -13.81776 -13.42945 -13.16926 -13.10642 -12.97968 -12.77938 -12.63710 -12.31761 -12.24981 -12.19770 -11.78314 -11.45821 -11.39900 -11.20883 -11.07257 -11.00268 -10.74526 -10.68647 -10.64680 -10.51124 -10.36186 -10.07805 -9.81780 -9.59490 -9.31287 -9.24751 -8.66570 -7.89686 -6.55537 -4.17766 2.96937 3.14709 3.21715 3.48381 3.80022 3.91724 4.03915 4.24801 4.82934 4.91154 4.97500 5.19686 5.23215 5.25098 5.31609 5.37401 5.39830 5.48008 5.54420 5.61017 5.70111 5.73589 5.81615 5.81906 5.85203 5.94345 6.05080 6.06906 6.10502 6.17192 6.18291 6.20480 6.27172 6.32988 6.34933 6.41884 6.45396 6.50714 6.72012 6.84145 7.17731 7.28415 7.44720 7.98125 8.14420 8.83819 9.22342 9.54610 10.54569 Molecular weight = 299.19amu Principal moments of inertia in cm(-1) A = 0.016827 B = 0.004603 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.605859 B = 6082.127193 C = 7175.438251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.098 3.902 5 N -0.457 5.457 6 C -0.351 4.351 7 H 0.107 0.893 8 C 0.071 3.929 9 N -0.855 5.855 10 Si 0.874 3.126 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.488 3.512 15 O -0.597 6.597 16 C -0.157 4.157 17 C 0.076 3.924 18 O -0.393 6.393 19 C 0.249 3.751 20 C -0.080 4.080 21 C -0.142 4.142 22 C -0.143 4.143 23 O -0.387 6.387 24 C 0.079 3.921 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.276 0.724 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 4.006 8.560 9.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.025 4.025 5 N -0.176 5.176 6 C -0.478 4.478 7 H 0.125 0.875 8 C -0.137 4.137 9 N -0.490 5.490 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.277 3.723 15 O -0.482 6.482 16 C -0.179 4.179 17 C 0.000 4.000 18 O -0.313 6.313 19 C 0.154 3.846 20 C -0.099 4.099 21 C -0.199 4.199 22 C -0.200 4.200 23 O -0.307 6.307 24 C 0.002 3.998 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.313 3.959 8.710 9.573 hybrid contribution 0.419 -1.333 -0.099 1.401 sum 0.732 2.626 8.611 9.033 Atomic orbital electron populations 1.21739 0.96107 1.00929 1.01763 1.21478 0.95633 0.97387 1.01636 1.21845 0.95893 0.96116 1.02519 1.21714 0.94131 0.85245 1.01377 1.43751 1.56214 1.11671 1.05993 1.19094 1.40537 0.98366 0.89769 0.87513 1.25298 0.95754 0.98032 0.94632 1.69745 1.39991 1.39991 0.99250 0.87029 0.79936 0.83409 0.79469 1.19889 1.21378 1.18616 1.19936 0.80477 0.88325 0.83593 1.90546 1.56490 1.69881 1.31326 1.22205 0.98638 0.95711 1.01335 1.22490 0.99741 0.81347 0.96443 1.88040 1.22014 1.27258 1.94029 1.23366 0.79522 0.94275 0.87487 1.21003 0.96627 0.92001 1.00258 1.21748 1.01973 0.99915 0.96306 1.21750 0.93962 1.01660 1.02647 1.88098 1.73804 1.24477 1.44349 1.22488 0.92651 0.81207 1.03459 0.93238 0.92920 0.92743 0.92230 0.92286 0.92064 0.91207 0.91214 0.91527 0.91344 0.87037 0.88548 0.91942 0.93298 0.89606 0.92843 0.92279 0.91565 0.91391 0.92275 0.92851 0.93214 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.92 5.93 -26.73 -0.16 -2.08 16 3 C -0.13 -2.36 5.51 -26.73 -0.15 -2.51 16 4 C 0.10 2.12 4.04 -4.04 -0.02 2.10 16 5 N -0.46 -10.62 2.18 -114.81 -0.25 -10.87 16 6 C -0.35 -8.77 8.84 -14.94 -0.13 -8.90 16 7 H 0.11 2.82 6.56 -52.48 -0.34 2.48 16 8 C 0.07 1.81 5.31 -17.47 -0.09 1.71 16 9 N -0.86 -22.94 13.96 55.50 0.77 -22.17 16 10 Si 0.87 19.93 25.07 -169.99 -4.26 15.67 16 11 H -0.27 -5.94 6.53 56.52 0.37 -5.58 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.49 10.95 6.69 -10.99 -0.07 10.88 16 15 O -0.60 -14.27 15.65 5.55 0.09 -14.19 16 16 C -0.16 -3.12 2.25 -91.50 -0.21 -3.33 16 17 C 0.08 1.36 5.92 37.29 0.22 1.58 16 18 O -0.39 -6.72 9.87 -59.03 -0.58 -7.30 16 19 C 0.25 3.90 2.74 37.16 0.10 4.00 16 20 C -0.08 -1.03 2.93 -90.62 -0.27 -1.29 16 21 C -0.14 -1.52 9.05 37.16 0.34 -1.18 16 22 C -0.14 -1.58 9.05 37.16 0.34 -1.24 16 23 O -0.39 -6.94 9.86 -59.03 -0.58 -7.53 16 24 C 0.08 1.49 6.20 37.29 0.23 1.72 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.07 1.55 3.31 -51.93 -0.17 1.37 16 33 H 0.07 1.44 7.49 -51.93 -0.39 1.05 16 34 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.11 2.35 6.41 -51.93 -0.33 2.02 16 36 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 43 H 0.07 0.83 7.68 -51.93 -0.40 0.44 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.12 2.31 7.87 -51.93 -0.41 1.90 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -27.70 366.82 -7.14 -34.84 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.35 Total: 6.13 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 0.50 Total: -0.11 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.52 Total: -33.04 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.08 Total: -29.01 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.26 Total: 15.67 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.70 -7.14 -34.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183175813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.575 kcal (2) G-P(sol) polarization free energy of solvation -27.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds