Wall clock time and date at job start Fri Apr 10 2020 20:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.32234 * 2 1 4 4 C 1.54859 * 109.33033 * 119.48053 * 2 1 3 5 5 N 1.44587 * 109.60332 * 48.99868 * 4 2 1 6 6 C 1.34777 * 118.64301 * 270.72677 * 5 4 2 7 7 O 1.21507 * 119.99933 * 359.97438 * 6 5 4 8 8 O 1.34635 * 119.99446 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99951 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46885 * 59.99904 * 9 8 6 11 11 C 1.52998 * 109.47533 * 179.97438 * 9 8 6 12 12 C 1.53006 * 109.46989 * 300.00243 * 9 8 6 13 13 C 1.47605 * 122.70882 * 90.72873 * 5 4 2 14 14 C 1.53946 * 112.14006 * 317.86811 * 13 5 4 15 15 C 1.50886 * 110.09298 * 319.43696 * 14 13 5 16 16 C 1.47098 * 109.32885 * 240.34893 * 2 1 3 17 17 H 1.08997 * 108.50743 * 181.28012 * 16 2 1 18 18 O 1.42898 * 108.51188 * 63.63440 * 16 2 1 19 19 C 1.34925 * 116.99913 * 149.99953 * 18 16 2 20 20 H 1.08002 * 120.00167 * 359.97438 * 19 18 16 21 21 C 1.38633 * 120.00223 * 179.97438 * 19 18 16 22 22 N 1.31579 * 119.99980 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00086 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47362 * 89.99841 * 23 21 19 25 25 H 1.48497 * 109.47564 * 210.00090 * 23 21 19 26 26 H 1.48505 * 109.46964 * 330.00274 * 23 21 19 27 27 H 1.09001 * 109.47002 * 179.65035 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.65472 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.65301 * 1 2 3 30 30 H 1.08992 * 109.45347 * 169.04130 * 4 2 1 31 31 H 1.09006 * 109.44846 * 288.96289 * 4 2 1 32 32 H 1.08995 * 109.47398 * 60.00101 * 10 9 8 33 33 H 1.09009 * 109.47032 * 180.02562 * 10 9 8 34 34 H 1.09005 * 109.47395 * 300.00026 * 10 9 8 35 35 H 1.09004 * 109.46608 * 59.99848 * 11 9 8 36 36 H 1.08995 * 109.47119 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.47248 * 300.00158 * 11 9 8 38 38 H 1.08996 * 109.47288 * 59.99736 * 12 9 8 39 39 H 1.08995 * 109.46916 * 180.02562 * 12 9 8 40 40 H 1.09004 * 109.46812 * 299.99396 * 12 9 8 41 41 H 1.09001 * 108.94290 * 197.18219 * 13 5 4 42 42 H 1.08994 * 108.87509 * 78.50617 * 13 5 4 43 43 H 1.08995 * 109.36783 * 199.24834 * 14 13 5 44 44 H 1.09001 * 109.26905 * 79.56102 * 14 13 5 45 45 H 1.08997 * 109.49087 * 331.92530 * 15 14 13 46 46 H 1.09010 * 109.48722 * 211.85686 * 15 14 13 47 47 H 0.97003 * 119.99966 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8907 1.0286 0.0000 4 6 2.0427 -0.7191 1.2721 5 7 1.3600 -1.9848 1.4222 6 6 0.2049 -2.0176 2.1158 7 8 -0.2420 -0.9968 2.6002 8 8 -0.4537 -3.1814 2.2719 9 6 -1.6915 -3.1419 3.0301 10 6 -2.6807 -2.1987 2.3426 11 6 -2.2920 -4.5473 3.0999 12 6 -1.4062 -2.6377 4.4462 13 6 1.8760 -3.2425 0.8471 14 6 2.4214 -3.0475 -0.5792 15 6 1.5194 -2.1210 -1.3569 16 6 2.0169 -0.6867 -1.2063 17 1 3.1066 -0.6991 -1.1814 18 8 1.5993 0.0581 -2.3521 19 6 2.3938 0.0033 -3.4413 20 1 3.2994 -0.5848 -3.4200 21 6 2.0476 0.7018 -4.5876 22 7 2.8222 0.6479 -5.6499 23 14 0.4809 1.7183 -4.6247 24 1 0.7771 3.1010 -4.1709 25 1 -0.0524 1.7556 -6.0101 26 1 -0.5275 1.1066 -3.7224 27 1 -0.3633 -1.0277 -0.0063 28 1 -0.3633 0.5084 0.8930 29 1 -0.3633 0.5192 -0.8869 30 1 3.1149 -0.8934 1.1834 31 1 1.8476 -0.0959 2.1449 32 1 -2.8839 -2.5578 1.3337 33 1 -3.6097 -2.1687 2.9120 34 1 -2.2531 -1.1973 2.2925 35 1 -1.5873 -5.2196 3.5894 36 1 -3.2213 -4.5175 3.6686 37 1 -2.4953 -4.9061 2.0909 38 1 -0.9786 -1.6363 4.3962 39 1 -2.3352 -2.6084 5.0155 40 1 -0.7014 -3.3097 4.9361 41 1 1.0704 -3.9763 0.8209 42 1 2.6766 -3.6189 1.4838 43 1 2.4689 -4.0128 -1.0831 44 1 3.4217 -2.6177 -0.5262 45 1 0.5025 -2.1956 -0.9718 46 1 1.5313 -2.4014 -2.4102 47 1 2.5802 1.1370 -6.4519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:24 Heat of formation + Delta-G solvation = -115.582037 kcal Electronic energy + Delta-G solvation = -27014.551854 eV Core-core repulsion = 23391.304871 eV Total energy + Delta-G solvation = -3623.246982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07596 -39.15936 -37.05713 -35.77628 -34.24609 -33.06581 -32.67272 -31.47941 -27.55995 -27.49667 -27.09006 -26.56568 -25.10663 -23.39555 -22.44327 -20.70187 -19.22819 -18.74841 -17.83148 -17.61121 -16.70748 -16.38944 -15.65317 -15.45789 -14.77498 -14.55227 -14.34508 -14.16234 -13.69314 -13.66740 -13.31813 -12.99970 -12.70335 -12.63193 -12.32749 -12.13795 -12.05644 -12.02610 -11.89679 -11.82547 -11.46862 -11.38267 -11.20634 -11.18340 -10.92025 -10.75721 -10.50229 -10.44638 -10.37921 -10.12443 -9.90254 -9.66146 -9.38657 -9.14171 -8.55795 -8.11268 -5.95395 -3.61097 2.24042 2.94091 3.44845 3.48124 3.65274 3.81464 4.59933 4.60473 4.63904 4.78331 4.81720 4.96595 5.11292 5.16359 5.30471 5.30824 5.39341 5.41716 5.43168 5.53261 5.55772 5.63014 5.67141 5.75144 5.77171 5.83579 5.86402 5.92575 5.94827 6.12937 6.15599 6.22209 6.26495 6.37296 6.43066 6.45301 6.57082 6.65068 6.72765 6.88526 6.92335 7.10945 7.42536 7.96307 8.41739 8.45324 9.46054 10.02952 11.17790 Molecular weight = 299.19amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.004341 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.136269 B = 6448.495016 C = 6845.946448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 H 0.086 0.914 4 C 0.138 3.862 5 N -0.582 5.582 6 C 0.649 3.351 7 O -0.566 6.566 8 O -0.365 6.365 9 C 0.136 3.864 10 C -0.184 4.184 11 C -0.140 4.140 12 C -0.182 4.182 13 C 0.114 3.886 14 C -0.130 4.130 15 C -0.141 4.141 16 C 0.116 3.884 17 H 0.039 0.961 18 O -0.326 6.326 19 C -0.350 4.350 20 H 0.077 0.923 21 C 0.042 3.958 22 N -0.917 5.917 23 Si 0.904 3.096 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.265 1.265 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 -10.288 19.404 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.123 4.123 3 H 0.104 0.896 4 C 0.016 3.984 5 N -0.321 5.321 6 C 0.404 3.596 7 O -0.455 6.455 8 O -0.280 6.280 9 C 0.099 3.901 10 C -0.241 4.241 11 C -0.197 4.197 12 C -0.239 4.239 13 C -0.008 4.008 14 C -0.168 4.168 15 C -0.179 4.179 16 C 0.057 3.943 17 H 0.057 0.943 18 O -0.242 6.242 19 C -0.428 4.428 20 H 0.095 0.905 21 C -0.154 4.154 22 N -0.563 5.563 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.189 1.189 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.817 -9.850 19.438 22.832 hybrid contribution -0.442 0.304 -0.297 0.613 sum -7.259 -9.546 19.141 22.588 Atomic orbital electron populations 1.21796 0.94546 1.01132 1.01696 1.20842 0.97734 1.00091 0.93585 0.89612 1.21492 0.95627 0.82741 0.98564 1.46611 1.21661 1.10078 1.53739 1.18016 0.81011 0.81899 0.78629 1.90866 1.67546 1.33811 1.53283 1.86296 1.37417 1.33852 1.70405 1.22002 0.80760 0.96782 0.90550 1.22522 0.98841 1.02139 1.00633 1.21849 1.00658 0.94058 1.03174 1.22503 1.02534 1.04069 0.94777 1.22003 0.99538 0.84550 0.94726 1.21744 1.00085 1.00977 0.93968 1.21700 0.99262 0.95842 1.01061 1.20552 0.96858 0.89966 0.86915 0.94346 1.85330 1.49769 1.68552 1.20560 1.20423 1.03756 1.29063 0.89607 0.90510 1.24291 0.98486 0.98343 0.94329 1.69689 1.38491 1.44880 1.03201 0.86204 0.83912 0.80357 0.76353 1.20875 1.21971 1.18942 0.93595 0.92450 0.92240 0.90131 0.89347 0.92147 0.91460 0.89116 0.91638 0.90362 0.91474 0.89263 0.91434 0.92432 0.89661 0.92039 0.90698 0.91468 0.91846 0.90500 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.36 37.16 0.27 -2.17 16 2 C -0.10 -1.78 2.71 -92.47 -0.25 -2.03 16 3 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 4 C 0.14 1.92 5.18 -4.08 -0.02 1.90 16 5 N -0.58 -7.95 1.84 -178.33 -0.33 -8.27 16 6 C 0.65 9.41 5.84 54.06 0.32 9.73 16 7 O -0.57 -9.00 9.27 -19.28 -0.18 -9.18 16 8 O -0.36 -4.77 8.39 -40.31 -0.34 -5.11 16 9 C 0.14 1.48 1.13 -90.62 -0.10 1.38 16 10 C -0.18 -2.10 8.37 37.16 0.31 -1.78 16 11 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 12 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16 13 C 0.11 1.35 6.11 -2.94 -0.02 1.33 16 14 C -0.13 -1.74 5.71 -27.30 -0.16 -1.90 16 15 C -0.14 -2.51 5.03 -28.02 -0.14 -2.65 16 16 C 0.12 2.32 1.75 -29.79 -0.05 2.26 16 17 H 0.04 0.78 7.01 -51.93 -0.36 0.42 16 18 O -0.33 -8.38 7.41 -16.50 -0.12 -8.50 16 19 C -0.35 -10.13 9.87 30.88 0.30 -9.83 16 20 H 0.08 2.32 7.89 -52.49 -0.41 1.90 16 21 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 22 N -0.92 -28.49 13.96 55.48 0.77 -27.72 16 23 Si 0.90 23.55 28.62 -169.99 -4.86 18.68 16 24 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.26 -6.91 7.11 56.52 0.40 -6.50 16 27 H 0.05 0.83 4.49 -51.93 -0.23 0.59 16 28 H 0.06 1.00 6.87 -51.93 -0.36 0.65 16 29 H 0.06 1.22 7.63 -51.93 -0.40 0.82 16 30 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 31 H 0.09 1.21 7.30 -51.93 -0.38 0.83 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.99 6.87 -51.93 -0.36 0.63 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.90 7.32 -51.93 -0.38 0.52 16 45 H 0.06 1.14 5.30 -51.93 -0.28 0.87 16 46 H 0.08 1.57 7.76 -51.92 -0.40 1.17 16 47 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -32.52 350.59 -6.72 -39.23 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.95 Total: 0.53 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 1.01 Total: -4.95 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.45 Total: -35.99 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.64 Total: -22.79 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.86 Total: 18.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.52 -6.72 -39.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.349 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds