Wall clock time and date at job start Fri Apr 10 2020 20:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99914 * 2 1 4 4 C 1.53002 * 109.46973 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.46698 * 65.00380 * 4 3 2 6 6 C 1.42901 * 113.99881 * 179.97438 * 5 4 3 7 7 H 1.09001 * 110.88510 * 333.88589 * 6 5 4 8 8 C 1.55160 * 111.03398 * 97.78263 * 6 5 4 9 9 C 1.54339 * 103.01630 * 153.39668 * 8 6 5 10 10 N 1.47016 * 107.26923 * 338.14195 * 9 8 6 11 11 C 1.34774 * 125.65072 * 178.85088 * 10 9 8 12 12 O 1.21284 * 120.00066 * 179.69194 * 11 10 9 13 13 C 1.50706 * 119.99833 * 359.69262 * 11 10 9 14 14 C 1.53002 * 109.46994 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46891 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46947 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47238 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99515 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00176 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00043 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47216 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 119.99848 * 21 19 17 24 24 H 1.48501 * 109.47057 * 239.99829 * 21 19 17 25 25 C 1.47428 * 108.70086 * 358.58324 * 10 9 8 26 26 H 1.09000 * 109.47184 * 299.99768 * 1 2 3 27 27 H 1.08998 * 109.47329 * 59.99927 * 1 2 3 28 28 H 1.09005 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47079 * 60.00119 * 3 2 1 30 30 H 1.08998 * 109.47282 * 300.00247 * 3 2 1 31 31 H 1.08995 * 109.47360 * 304.99914 * 4 3 2 32 32 H 1.09001 * 109.46899 * 184.99939 * 4 3 2 33 33 H 1.08999 * 110.72078 * 271.95554 * 8 6 5 34 34 H 1.08993 * 110.72246 * 35.05244 * 8 6 5 35 35 H 1.09007 * 109.98638 * 218.65987 * 9 8 6 36 36 H 1.09002 * 109.78000 * 97.50208 * 9 8 6 37 37 H 1.08998 * 109.46836 * 59.99586 * 13 11 10 38 38 H 1.09001 * 109.46547 * 299.99940 * 13 11 10 39 39 H 1.08992 * 109.47056 * 59.99637 * 14 13 11 40 40 H 1.08996 * 109.46698 * 299.99753 * 14 13 11 41 41 H 1.09001 * 109.47372 * 59.99964 * 15 14 13 42 42 H 1.09004 * 109.47108 * 299.99708 * 15 14 13 43 43 H 1.09001 * 109.46832 * 59.99979 * 16 15 14 44 44 H 1.09000 * 109.47611 * 300.00276 * 16 15 14 45 45 H 0.97004 * 119.99507 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.36534 * 143.19244 * 25 10 9 47 47 H 1.08993 * 110.37196 * 265.40777 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9657 0.5793 -1.2202 6 6 5.3821 0.4197 -1.3222 7 1 5.9014 1.1599 -0.7133 8 6 5.8099 -1.0199 -0.9324 9 6 7.1230 -1.2174 -1.7190 10 7 7.1109 -0.2610 -2.8355 11 6 8.0927 -0.1032 -3.7453 12 8 7.9726 0.7166 -4.6310 13 6 9.3397 -0.9454 -3.6620 14 6 10.2862 -0.5695 -4.8038 15 6 11.5524 -1.4241 -4.7188 16 6 12.4986 -1.0487 -5.8610 17 6 13.7461 -1.8900 -5.7770 18 1 13.8531 -2.6198 -4.9880 19 6 14.7508 -1.7281 -6.7072 20 7 14.6207 -0.8390 -7.6676 21 14 16.2968 -2.7714 -6.6034 22 1 16.1977 -3.6888 -5.4399 23 1 16.4426 -3.5657 -7.8496 24 1 17.4795 -1.8887 -6.4379 25 6 5.8442 0.4923 -2.7989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9784 2.1765 0.0902 33 1 5.9858 -1.0927 0.1409 34 1 5.0593 -1.7442 -1.2486 35 1 7.1773 -2.2359 -2.1037 36 1 7.9755 -1.0184 -1.0696 37 1 9.0725 -1.9991 -3.7428 38 1 9.8345 -0.7683 -2.7070 39 1 10.5532 0.4840 -4.7225 40 1 9.7915 -0.7463 -5.7588 41 1 11.2857 -2.4779 -4.7999 42 1 12.0469 -1.2469 -3.7637 43 1 12.7653 0.0051 -5.7803 44 1 12.0039 -1.2261 -6.8159 45 1 15.3274 -0.7254 -8.3222 46 1 6.0104 1.5285 -3.0938 47 1 5.1067 0.0264 -3.4523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:38 Heat of formation + Delta-G solvation = -145.644546 kcal Electronic energy + Delta-G solvation = -23552.910636 eV Core-core repulsion = 19928.360046 eV Total energy + Delta-G solvation = -3624.550591 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27299 -38.93717 -38.01810 -36.48034 -34.85635 -32.62775 -31.68717 -30.40843 -29.86022 -28.53825 -26.71133 -25.63076 -23.69135 -23.09994 -22.04045 -21.41462 -19.97271 -19.19678 -17.79115 -17.16534 -17.06414 -16.28966 -16.15610 -15.97758 -15.54363 -15.27471 -15.03254 -14.66164 -14.41339 -14.31033 -13.85030 -13.54410 -12.97049 -12.84875 -12.70591 -12.56428 -12.26475 -12.03390 -12.01514 -11.83842 -11.63102 -11.59128 -11.50624 -11.07289 -10.96601 -10.50030 -10.46236 -10.37831 -10.18230 -9.97372 -9.80034 -9.57957 -9.19611 -8.94427 -8.78515 -8.28266 -5.92888 -3.95287 2.63022 2.72424 3.26554 3.33794 3.34839 3.41945 3.45985 4.10742 4.23133 4.45557 4.51010 4.58711 4.65664 4.72418 4.79161 4.83790 4.89105 4.91225 4.97748 5.10363 5.21307 5.23686 5.30560 5.35571 5.37918 5.41706 5.42608 5.58434 5.61010 5.68534 5.87122 6.08826 6.17568 6.34905 6.58286 6.62523 6.78104 6.87534 7.05048 7.23186 7.40901 7.77282 7.93278 8.08847 8.21968 8.50656 9.12687 9.68326 11.18456 Molecular weight = 299.19amu Principal moments of inertia in cm(-1) A = 0.053980 B = 0.001792 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.588152 B =15619.958664 C =15880.295238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.364 6.364 6 C 0.076 3.924 7 H 0.079 0.921 8 C -0.152 4.152 9 C 0.102 3.898 10 N -0.626 5.626 11 C 0.530 3.470 12 O -0.532 6.532 13 C -0.132 4.132 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.110 3.890 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.083 0.917 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.827 2.795 20.658 34.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.013 4.013 5 O -0.282 6.282 6 C 0.017 3.983 7 H 0.097 0.903 8 C -0.190 4.190 9 C -0.021 4.021 10 N -0.364 5.364 11 C 0.320 3.680 12 O -0.408 6.408 13 C -0.172 4.172 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.013 4.013 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.745 3.098 19.813 34.234 hybrid contribution 0.769 -0.274 0.314 0.874 sum -26.976 2.823 20.127 33.776 Atomic orbital electron populations 1.22756 0.80948 1.02963 0.99914 1.87960 1.19689 1.27226 1.95386 1.22571 0.92253 0.85615 1.01038 1.22604 0.93455 0.97560 0.87729 1.87966 1.20634 1.81655 1.37952 1.23196 0.81939 0.96498 0.96694 0.90286 1.23121 0.97153 0.98042 1.00680 1.21999 0.98127 0.93755 0.88188 1.48486 1.18389 1.39562 1.29940 1.20848 0.83677 0.83688 0.79796 1.90718 1.79774 1.36277 1.33983 1.21778 0.93022 0.99756 1.02663 1.21472 0.95339 1.00994 0.96400 1.21646 0.94418 0.97869 1.00814 1.19108 0.93120 0.96823 0.92773 1.21329 1.02065 1.20427 1.11958 0.92694 1.25043 0.98540 0.95514 0.95498 1.69994 1.33539 1.34419 1.15497 0.86556 0.83355 0.80322 0.77865 1.19792 1.21064 1.21079 1.22020 0.86028 0.98084 0.95179 0.94177 0.93932 0.89504 0.91726 0.92229 0.92186 0.91491 0.89845 0.89292 0.90720 0.90923 0.89132 0.89178 0.91782 0.91753 0.93461 0.93477 0.96567 0.96551 0.93130 0.89886 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.21 10.67 -40.09 -0.43 -3.63 16 3 C 0.06 0.37 6.32 37.16 0.23 0.61 16 4 C 0.06 0.40 6.16 37.16 0.23 0.62 16 5 O -0.36 -3.29 10.12 -40.09 -0.41 -3.69 16 6 C 0.08 0.62 3.55 -24.58 -0.09 0.53 16 7 H 0.08 0.55 7.83 -51.93 -0.41 0.14 16 8 C -0.15 -1.07 6.69 -24.89 -0.17 -1.24 16 9 C 0.10 0.84 6.49 -3.06 -0.02 0.82 16 10 N -0.63 -7.36 3.33 -170.51 -0.57 -7.93 16 11 C 0.53 8.04 7.85 -10.98 -0.09 7.95 16 12 O -0.53 -10.30 16.24 5.55 0.09 -10.21 16 13 C -0.13 -1.87 4.89 -27.88 -0.14 -2.00 16 14 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.75 13.29 55.43 0.74 -27.02 16 21 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 25 C 0.11 1.19 6.64 -2.53 -0.02 1.17 16 26 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.26 8.10 -51.93 -0.42 0.83 16 40 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -35.72 387.93 -8.31 -44.03 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -8.82 Total: -6.13 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 0.26 Total: -8.31 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.17 Total: -34.95 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.74 Total: -17.53 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.72 -8.31 -44.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.618 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds