Wall clock time and date at job start Fri Apr 10 2020 20:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.06438 * 2 1 4 4 C 1.53990 * 109.91848 * 238.79187 * 2 1 3 5 5 H 1.08998 * 110.30947 * 120.51055 * 4 2 1 6 6 C 1.52991 * 110.39460 * 358.38194 * 4 2 1 7 7 C 1.50699 * 109.47609 * 177.78019 * 6 4 2 8 8 C 1.38232 * 120.00053 * 269.73310 * 7 6 4 9 9 C 1.38236 * 119.99845 * 179.78641 * 8 7 6 10 10 C 1.38237 * 119.99884 * 0.43392 * 9 8 7 11 11 C 1.38229 * 120.00402 * 359.81534 * 10 9 8 12 12 C 1.38236 * 119.99483 * 359.97438 * 11 10 9 13 13 C 1.54603 * 105.13955 * 239.42307 * 4 2 1 14 14 C 1.54939 * 102.91854 * 338.04255 * 13 4 2 15 15 N 1.47907 * 109.91546 * 121.19929 * 2 1 3 16 16 C 1.46899 * 111.00179 * 265.20033 * 15 2 1 17 17 C 1.53004 * 109.47072 * 71.75729 * 16 15 2 18 18 C 1.50696 * 115.55927 * 41.03034 * 17 16 15 19 19 H 1.08004 * 120.00388 * 359.69192 * 18 17 16 20 20 C 1.37879 * 120.00189 * 179.69436 * 18 17 16 21 21 N 1.31522 * 119.99272 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00466 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47082 * 60.00122 * 22 20 18 24 24 H 1.48499 * 109.47234 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47415 * 300.00034 * 22 20 18 26 26 C 1.52997 * 117.49605 * 186.71358 * 17 16 15 27 27 C 1.53000 * 60.00112 * 107.49367 * 26 17 16 28 28 H 1.08994 * 109.46951 * 301.07508 * 1 2 3 29 29 H 1.08996 * 109.46629 * 61.07721 * 1 2 3 30 30 H 1.08999 * 109.46643 * 181.07300 * 1 2 3 31 31 H 1.09003 * 109.47307 * 297.78262 * 6 4 2 32 32 H 1.08998 * 109.47160 * 57.78084 * 6 4 2 33 33 H 1.08000 * 120.00329 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.99965 * 180.27545 * 9 8 7 35 35 H 1.08008 * 119.99849 * 179.84020 * 10 9 8 36 36 H 1.07996 * 120.00589 * 180.02562 * 11 10 9 37 37 H 1.08008 * 120.00075 * 179.97438 * 12 11 10 38 38 H 1.08999 * 110.72285 * 219.69058 * 13 4 2 39 39 H 1.08991 * 110.87593 * 96.47219 * 13 4 2 40 40 H 1.08996 * 110.66987 * 278.97960 * 14 13 4 41 41 H 1.09005 * 110.81004 * 155.92007 * 14 13 4 42 42 H 1.09001 * 109.47158 * 311.76080 * 16 15 2 43 43 H 1.09000 * 109.47178 * 191.76008 * 16 15 2 44 44 H 0.97009 * 119.99363 * 180.02562 * 21 20 18 45 45 H 1.09000 * 117.50168 * 359.97438 * 26 17 16 46 46 H 1.09010 * 117.49801 * 214.98311 * 26 17 16 47 47 H 1.08999 * 117.49931 * 107.48602 * 27 26 17 48 48 H 1.08996 * 117.49683 * 252.49011 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0547 -0.7502 -1.2383 5 1 2.6715 -0.0896 -1.8476 6 6 0.8886 -1.2976 -2.0637 7 6 1.4225 -1.9796 -3.2969 8 6 1.6004 -1.2589 -4.4630 9 6 2.0943 -1.8836 -5.5930 10 6 2.4019 -3.2309 -5.5593 11 6 2.2191 -3.9527 -4.3947 12 6 1.7293 -3.3271 -3.2635 13 6 2.9060 -1.9118 -0.6760 14 6 3.2681 -1.4184 0.7474 15 7 2.0339 -0.7204 1.1895 16 6 2.3211 0.2124 2.2874 17 6 1.0064 0.7391 2.8663 18 6 -0.0926 -0.2810 3.0167 19 1 0.0765 -1.3051 2.7183 20 6 -1.3142 0.0931 3.5351 21 7 -1.5200 1.3402 3.8989 22 14 -2.6768 -1.1710 3.7209 23 1 -2.2225 -2.2595 4.6231 24 1 -3.8804 -0.5203 4.2982 25 1 -3.0107 -1.7383 2.3898 26 6 1.0913 1.8465 3.9185 27 6 0.5986 2.1692 2.5064 28 1 -0.3633 0.5304 0.8801 29 1 -0.3632 0.4970 -0.8995 30 1 -0.3632 -1.0275 0.0192 31 1 0.3260 -2.0151 -1.4665 32 1 0.2342 -0.4767 -2.3570 33 1 1.3564 -0.2072 -4.4905 34 1 2.2375 -1.3195 -6.5028 35 1 2.7853 -3.7195 -6.4429 36 1 2.4597 -5.0052 -4.3683 37 1 1.5861 -3.8911 -2.3536 38 1 3.8054 -2.0558 -1.2747 39 1 2.3242 -2.8322 -0.6288 40 1 4.1097 -0.7266 0.7123 41 1 3.4905 -2.2597 1.4039 42 1 2.9120 1.0470 1.9099 43 1 2.8800 -0.3052 3.0671 44 1 -2.3794 1.6033 4.2640 45 1 2.0837 2.1995 4.1987 46 1 0.3520 1.8373 4.7197 47 1 -0.4646 2.3722 2.3785 48 1 1.2668 2.7351 1.8574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559589607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:09 Heat of formation + Delta-G solvation = 59.950513 kcal Electronic energy + Delta-G solvation = -25072.768579 eV Core-core repulsion = 21900.275274 eV Total energy + Delta-G solvation = -3172.493306 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79038 -38.63442 -36.33128 -33.70332 -31.53384 -30.98448 -30.74804 -30.30831 -26.77734 -25.69016 -24.46022 -23.89992 -22.62131 -21.44536 -20.69178 -20.40950 -18.96045 -18.45634 -16.79277 -16.07038 -15.58614 -15.18182 -14.95720 -14.68864 -14.64394 -13.88374 -13.51335 -13.45941 -13.32904 -13.05108 -12.68778 -12.42404 -12.40721 -11.86882 -11.82190 -11.53847 -11.21705 -11.00523 -10.94419 -10.74183 -10.66015 -10.59012 -10.53825 -10.34532 -10.10805 -10.06562 -9.98270 -9.70437 -9.32551 -8.94221 -8.68401 -8.55379 -8.23166 -7.92705 -7.55294 -5.83052 -3.82721 1.35889 1.37773 3.37779 3.42583 3.46175 3.77336 4.50363 4.62384 4.76868 4.83828 4.94988 5.05278 5.07295 5.10920 5.22107 5.34729 5.45270 5.52173 5.65825 5.74109 5.77332 5.90232 5.91757 5.99772 6.08639 6.10728 6.18252 6.19665 6.23764 6.32320 6.36932 6.45435 6.46440 6.48869 6.56132 6.60601 6.65885 6.72740 6.81844 6.98906 7.01144 7.10439 7.27234 7.37349 7.56441 7.75867 7.83323 7.98266 8.18088 8.29955 8.69566 9.15698 9.69035 11.13512 Molecular weight = 299.19amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.004023 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.824504 B = 6958.257625 C = 7505.723962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.088 4.088 5 H 0.065 0.935 6 C -0.074 4.074 7 C -0.069 4.069 8 C -0.121 4.121 9 C -0.121 4.121 10 C -0.134 4.134 11 C -0.121 4.121 12 C -0.116 4.116 13 C -0.113 4.113 14 C 0.029 3.971 15 N -0.486 5.486 16 C 0.093 3.907 17 C 0.029 3.971 18 C -0.438 4.438 19 H 0.071 0.929 20 C 0.051 3.949 21 N -0.888 5.888 22 Si 0.890 3.110 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.278 1.278 26 C -0.193 4.193 27 C -0.190 4.190 28 H 0.104 0.896 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.011 0.989 43 H 0.059 0.941 44 H 0.255 0.745 45 H 0.036 0.964 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.751 -6.051 -15.055 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.059 0.941 4 C -0.107 4.107 5 H 0.083 0.917 6 C -0.111 4.111 7 C -0.069 4.069 8 C -0.139 4.139 9 C -0.139 4.139 10 C -0.152 4.152 11 C -0.139 4.139 12 C -0.134 4.134 13 C -0.150 4.150 14 C -0.099 4.099 15 N -0.210 5.210 16 C -0.035 4.035 17 C 0.028 3.972 18 C -0.476 4.476 19 H 0.090 0.910 20 C -0.149 4.149 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.231 4.231 27 C -0.228 4.228 28 H 0.122 0.878 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.029 0.971 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.203 -6.312 -14.766 17.600 hybrid contribution -0.007 0.149 -0.169 0.226 sum 7.196 -6.163 -14.935 17.687 Atomic orbital electron populations 1.22085 0.93235 1.02403 1.02407 1.22224 0.97472 0.94662 0.88102 0.94147 1.22041 0.95835 0.96778 0.96080 0.91677 1.20864 0.97397 1.00209 0.92675 1.20129 0.97446 0.93886 0.95421 1.21091 1.00194 0.99845 0.92791 1.21108 0.99621 0.94958 0.98237 1.21073 1.01471 0.94562 0.98051 1.21132 0.99762 0.99692 0.93272 1.21143 0.99422 0.94511 0.98290 1.22516 0.98888 0.98389 0.95254 1.23213 0.92564 0.98338 0.95779 1.64668 1.23663 1.27049 1.05587 1.21772 0.96958 0.92279 0.92474 1.18931 0.92481 0.87810 0.97984 1.20542 0.94377 0.95194 1.37480 0.91044 1.25017 0.98607 0.95155 0.96116 1.70022 1.23331 1.15844 1.43564 0.86680 0.81443 0.81640 0.78344 1.20539 1.21761 1.20324 1.22847 0.98199 1.07067 0.95024 1.22843 1.01342 1.01627 0.96983 0.87794 0.94933 0.92754 0.89940 0.90486 0.86262 0.86495 0.86609 0.86425 0.86009 0.92200 0.90873 0.95076 0.90725 0.97084 0.92267 0.93423 0.94507 0.87092 0.87351 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 7.46 37.16 0.28 -2.46 16 2 C 0.08 1.47 2.88 -66.64 -0.19 1.28 16 3 H 0.04 0.76 7.54 -51.93 -0.39 0.37 16 4 C -0.09 -1.25 3.01 -89.27 -0.27 -1.52 16 5 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 6 C -0.07 -0.98 3.55 -27.89 -0.10 -1.08 16 7 C -0.07 -0.84 4.89 -104.63 -0.51 -1.35 16 8 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 9 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 10 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 16 11 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 12 C -0.12 -1.33 8.85 -39.58 -0.35 -1.68 16 13 C -0.11 -1.53 5.67 -24.87 -0.14 -1.67 16 14 C 0.03 0.45 6.53 -1.90 -0.01 0.44 16 15 N -0.49 -9.15 4.07 -222.57 -0.90 -10.05 16 16 C 0.09 1.93 4.84 -3.82 -0.02 1.91 16 17 C 0.03 0.69 1.39 -155.66 -0.22 0.47 16 18 C -0.44 -11.36 6.36 -34.44 -0.22 -11.58 16 19 H 0.07 1.90 7.44 -52.48 -0.39 1.50 16 20 C 0.05 1.34 5.27 -17.82 -0.09 1.24 16 21 N -0.89 -24.27 8.58 55.43 0.48 -23.80 16 22 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 C -0.19 -4.77 9.38 -26.73 -0.25 -5.02 16 27 C -0.19 -4.61 8.19 -26.73 -0.22 -4.83 16 28 H 0.10 2.38 4.18 -51.93 -0.22 2.16 16 29 H 0.03 0.54 6.75 -51.93 -0.35 0.19 16 30 H 0.05 1.04 6.78 -51.93 -0.35 0.69 16 31 H 0.08 1.17 6.80 -51.93 -0.35 0.82 16 32 H 0.08 1.01 6.54 -51.93 -0.34 0.67 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.33 7.27 -52.48 -0.38 0.95 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.99 6.78 -51.93 -0.35 0.64 16 40 H 0.03 0.47 8.02 -51.93 -0.42 0.05 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.01 0.22 7.58 -51.93 -0.39 -0.17 16 43 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 44 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.11 3.03 6.26 -51.92 -0.32 2.70 16 47 H 0.11 2.90 6.31 -51.93 -0.33 2.57 16 48 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -26.99 359.16 -11.88 -38.87 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.95 Total: 6.14 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: -3.89 Total: -32.61 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: -0.43 Total: -33.85 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.99 -11.88 -38.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559589607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.823 kcal (2) G-P(sol) polarization free energy of solvation -26.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds