Wall clock time and date at job start Fri Apr 10 2020 20:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.06438 * 2 1 4 4 C 1.53990 * 109.91848 * 238.79187 * 2 1 3 5 5 H 1.08998 * 110.30947 * 120.51055 * 4 2 1 6 6 C 1.52991 * 110.39460 * 358.38194 * 4 2 1 7 7 C 1.50699 * 109.47609 * 177.78019 * 6 4 2 8 8 C 1.38232 * 120.00053 * 269.73310 * 7 6 4 9 9 C 1.38236 * 119.99845 * 179.78641 * 8 7 6 10 10 C 1.38237 * 119.99884 * 0.43392 * 9 8 7 11 11 C 1.38229 * 120.00402 * 359.81534 * 10 9 8 12 12 C 1.38236 * 119.99483 * 359.97438 * 11 10 9 13 13 C 1.54603 * 105.13955 * 239.42307 * 4 2 1 14 14 C 1.54939 * 102.91854 * 338.04255 * 13 4 2 15 15 N 1.47907 * 109.91546 * 121.19929 * 2 1 3 16 16 C 1.46899 * 111.00179 * 265.20033 * 15 2 1 17 17 C 1.53004 * 109.47072 * 71.75729 * 16 15 2 18 18 C 1.50696 * 115.55927 * 41.03034 * 17 16 15 19 19 H 1.08004 * 120.00388 * 359.69192 * 18 17 16 20 20 C 1.37879 * 120.00189 * 179.69436 * 18 17 16 21 21 N 1.31522 * 119.99272 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00466 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47082 * 60.00122 * 22 20 18 24 24 H 1.48499 * 109.47234 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47415 * 300.00034 * 22 20 18 26 26 C 1.52997 * 117.49605 * 186.71358 * 17 16 15 27 27 C 1.53000 * 60.00112 * 107.49367 * 26 17 16 28 28 H 1.08994 * 109.46951 * 301.07508 * 1 2 3 29 29 H 1.08996 * 109.46629 * 61.07721 * 1 2 3 30 30 H 1.08999 * 109.46643 * 181.07300 * 1 2 3 31 31 H 1.09003 * 109.47307 * 297.78262 * 6 4 2 32 32 H 1.08998 * 109.47160 * 57.78084 * 6 4 2 33 33 H 1.08000 * 120.00329 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.99965 * 180.27545 * 9 8 7 35 35 H 1.08008 * 119.99849 * 179.84020 * 10 9 8 36 36 H 1.07996 * 120.00589 * 180.02562 * 11 10 9 37 37 H 1.08008 * 120.00075 * 179.97438 * 12 11 10 38 38 H 1.08999 * 110.72285 * 219.69058 * 13 4 2 39 39 H 1.08991 * 110.87593 * 96.47219 * 13 4 2 40 40 H 1.08996 * 110.66987 * 278.97960 * 14 13 4 41 41 H 1.09005 * 110.81004 * 155.92007 * 14 13 4 42 42 H 1.09001 * 109.47158 * 311.76080 * 16 15 2 43 43 H 1.09000 * 109.47178 * 191.76008 * 16 15 2 44 44 H 0.97009 * 119.99363 * 180.02562 * 21 20 18 45 45 H 1.09000 * 117.50168 * 359.97438 * 26 17 16 46 46 H 1.09010 * 117.49801 * 214.98311 * 26 17 16 47 47 H 1.08999 * 117.49931 * 107.48602 * 27 26 17 48 48 H 1.08996 * 117.49683 * 252.49011 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0547 -0.7502 -1.2383 5 1 2.6715 -0.0896 -1.8476 6 6 0.8886 -1.2976 -2.0637 7 6 1.4225 -1.9796 -3.2969 8 6 1.6004 -1.2589 -4.4630 9 6 2.0943 -1.8836 -5.5930 10 6 2.4019 -3.2309 -5.5593 11 6 2.2191 -3.9527 -4.3947 12 6 1.7293 -3.3271 -3.2635 13 6 2.9060 -1.9118 -0.6760 14 6 3.2681 -1.4184 0.7474 15 7 2.0339 -0.7204 1.1895 16 6 2.3211 0.2124 2.2874 17 6 1.0064 0.7391 2.8663 18 6 -0.0926 -0.2810 3.0167 19 1 0.0765 -1.3051 2.7183 20 6 -1.3142 0.0931 3.5351 21 7 -1.5200 1.3402 3.8989 22 14 -2.6768 -1.1710 3.7209 23 1 -2.2225 -2.2595 4.6231 24 1 -3.8804 -0.5203 4.2982 25 1 -3.0107 -1.7383 2.3898 26 6 1.0913 1.8465 3.9185 27 6 0.5986 2.1692 2.5064 28 1 -0.3633 0.5304 0.8801 29 1 -0.3632 0.4970 -0.8995 30 1 -0.3632 -1.0275 0.0192 31 1 0.3260 -2.0151 -1.4665 32 1 0.2342 -0.4767 -2.3570 33 1 1.3564 -0.2072 -4.4905 34 1 2.2375 -1.3195 -6.5028 35 1 2.7853 -3.7195 -6.4429 36 1 2.4597 -5.0052 -4.3683 37 1 1.5861 -3.8911 -2.3536 38 1 3.8054 -2.0558 -1.2747 39 1 2.3242 -2.8322 -0.6288 40 1 4.1097 -0.7266 0.7123 41 1 3.4905 -2.2597 1.4039 42 1 2.9120 1.0470 1.9099 43 1 2.8800 -0.3052 3.0671 44 1 -2.3794 1.6033 4.2640 45 1 2.0837 2.1995 4.1987 46 1 0.3520 1.8373 4.7197 47 1 -0.4646 2.3722 2.3785 48 1 1.2668 2.7351 1.8574 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559589607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:09 Heat of formation + Delta-G solvation = 49.279726 kcal Electronic energy + Delta-G solvation = -25073.231299 eV Core-core repulsion = 21900.275274 eV Total energy + Delta-G solvation = -3172.956026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92167 -39.74177 -38.07982 -34.93079 -33.44973 -32.14145 -31.71891 -31.51852 -28.07980 -27.57839 -25.67907 -25.48860 -23.43679 -22.69595 -22.27006 -21.68811 -20.80322 -19.80228 -17.93014 -17.52353 -17.00798 -16.70058 -16.16638 -15.92688 -15.72791 -15.41256 -15.05952 -14.76531 -14.38969 -14.20893 -13.91816 -13.77749 -13.67479 -13.20881 -13.04342 -13.00859 -12.84379 -12.66420 -12.36303 -12.32570 -12.08407 -12.03885 -11.91571 -11.83647 -11.67224 -11.50489 -11.34352 -11.18925 -11.15767 -10.56325 -10.17984 -9.90830 -9.73355 -9.46651 -9.02028 -7.87329 -5.91011 0.54759 0.58548 1.46619 1.47765 1.54217 2.52275 2.96349 3.10271 3.30460 3.69838 3.83806 3.93509 4.04078 4.13448 4.20462 4.26597 4.37553 4.40566 4.46108 4.55602 4.59822 4.62427 4.71839 4.75361 4.78520 4.79997 4.87661 4.91901 5.01184 5.06409 5.07871 5.10915 5.18656 5.23900 5.26485 5.32365 5.35432 5.39577 5.47097 5.56439 5.67091 5.70477 5.74645 5.86342 5.97691 6.06182 6.22197 6.25313 6.37247 6.44763 6.70398 7.09834 7.62395 9.07266 Molecular weight = 299.19amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.004023 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.824504 B = 6958.257625 C = 7505.723962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.085 3.915 3 H 0.028 0.972 4 C -0.078 4.078 5 H 0.074 0.926 6 C -0.066 4.066 7 C -0.082 4.082 8 C -0.133 4.133 9 C -0.126 4.126 10 C -0.135 4.135 11 C -0.126 4.126 12 C -0.127 4.127 13 C -0.102 4.102 14 C 0.029 3.971 15 N -0.505 5.505 16 C 0.101 3.899 17 C 0.029 3.971 18 C -0.439 4.439 19 H 0.063 0.937 20 C 0.009 3.991 21 N -0.909 5.909 22 Si 0.941 3.059 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.274 1.274 26 C -0.199 4.199 27 C -0.181 4.181 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.017 0.983 43 H 0.061 0.939 44 H 0.251 0.749 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -7.431 -17.191 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 H 0.046 0.954 4 C -0.097 4.097 5 H 0.093 0.907 6 C -0.103 4.103 7 C -0.082 4.082 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.153 4.153 11 C -0.144 4.144 12 C -0.145 4.145 13 C -0.140 4.140 14 C -0.099 4.099 15 N -0.229 5.229 16 C -0.027 4.027 17 C 0.028 3.972 18 C -0.476 4.476 19 H 0.081 0.919 20 C -0.188 4.188 21 N -0.549 5.549 22 Si 0.769 3.231 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.200 1.200 26 C -0.238 4.238 27 C -0.219 4.219 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.035 0.965 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.645 -7.702 -16.906 20.491 hybrid contribution -0.449 0.571 0.451 0.855 sum 8.196 -7.131 -16.455 19.718 Atomic orbital electron populations 1.21937 0.94627 1.01357 1.01338 1.22183 0.96275 0.94525 0.89372 0.95382 1.21942 0.96299 0.96820 0.94674 0.90724 1.20700 0.96804 0.99778 0.93044 1.20027 0.98696 0.94327 0.95174 1.21260 1.00530 1.00319 0.93001 1.21407 0.98930 0.95435 0.98615 1.21427 1.00594 0.94544 0.98738 1.21412 0.99195 1.00773 0.92994 1.21251 0.99903 0.94380 0.98987 1.22461 0.99478 0.97886 0.94130 1.23292 0.91392 0.98277 0.96934 1.64578 1.25780 1.26753 1.05746 1.21597 0.94984 0.92872 0.93292 1.19036 0.93591 0.87253 0.97325 1.20646 0.95050 0.95141 1.36809 0.91894 1.25579 1.00417 0.96451 0.96328 1.70169 1.23334 1.17062 1.44359 0.85868 0.79220 0.79795 0.78215 1.20344 1.22002 1.19968 1.22758 0.98399 1.08268 0.94383 1.22618 0.99932 1.02381 0.96970 0.91691 0.93229 0.93530 0.91344 0.90824 0.85708 0.84443 0.84240 0.84518 0.85954 0.90235 0.90845 0.94207 0.90187 0.96539 0.92066 0.93940 0.92519 0.89907 0.90117 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 7.46 71.98 0.54 -4.64 16 2 C 0.08 2.92 2.88 45.06 0.13 3.05 16 3 H 0.03 1.04 7.54 -2.39 -0.02 1.02 16 4 C -0.08 -2.10 3.01 -9.92 -0.03 -2.13 16 5 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 6 C -0.07 -1.67 3.55 29.84 0.11 -1.57 16 7 C -0.08 -1.86 4.89 -19.87 -0.10 -1.96 16 8 C -0.13 -2.75 9.70 22.27 0.22 -2.54 16 9 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 10 C -0.14 -2.26 10.05 22.27 0.22 -2.03 16 11 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 12 C -0.13 -2.68 8.85 22.27 0.20 -2.49 16 13 C -0.10 -2.53 5.67 31.80 0.18 -2.35 16 14 C 0.03 0.83 6.53 86.65 0.57 1.40 16 15 N -0.50 -18.57 4.07 -858.06 -3.49 -22.06 16 16 C 0.10 4.11 4.84 86.30 0.42 4.53 16 17 C 0.03 1.38 1.39 -52.93 -0.07 1.31 16 18 C -0.44 -23.05 6.36 25.60 0.16 -22.89 16 19 H 0.06 3.37 7.44 -2.91 -0.02 3.35 16 20 C 0.01 0.50 5.27 84.65 0.45 0.95 16 21 N -0.91 -51.08 8.58 21.45 0.18 -50.90 16 22 Si 0.94 43.87 29.54 68.60 2.03 45.90 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 26 C -0.20 -9.97 9.38 30.59 0.29 -9.68 16 27 C -0.18 -8.92 8.19 30.59 0.25 -8.67 16 28 H 0.06 3.03 4.18 -2.39 -0.01 3.02 16 29 H 0.05 1.66 6.75 -2.39 -0.02 1.64 16 30 H 0.05 1.81 6.78 -2.39 -0.02 1.79 16 31 H 0.07 1.91 6.80 -2.39 -0.02 1.89 16 32 H 0.07 1.87 6.54 -2.39 -0.02 1.86 16 33 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 36 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.12 2.48 7.27 -2.91 -0.02 2.46 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.84 6.78 -2.39 -0.02 1.82 16 40 H 0.04 1.10 8.02 -2.39 -0.02 1.08 16 41 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.02 0.65 7.58 -2.39 -0.02 0.63 16 43 H 0.06 2.44 8.09 -2.39 -0.02 2.42 16 44 H 0.25 13.83 8.31 -92.70 -0.77 13.06 16 45 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.08 4.64 6.26 -2.38 -0.01 4.63 16 47 H 0.08 4.46 6.31 -2.39 -0.02 4.45 16 48 H 0.05 2.25 8.09 -2.39 -0.02 2.23 16 Total: -1.00 -58.16 359.16 3.61 -54.55 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.92 Total: 26.25 kcal Atomic # 6 Polarization: -57.71 SS G_CDS: 3.97 Total: -53.75 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -3.30 Total: -72.96 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -58.16 3.61 -54.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559589607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.830 kcal (2) G-P(sol) polarization free energy of solvation -58.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds