Wall clock time and date at job start Fri Apr 10 2020 20:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86794 * 120.00275 * 2 1 4 4 H 1.48504 * 109.47133 * 265.30619 * 3 2 1 5 5 H 1.48502 * 109.47038 * 25.30643 * 3 2 1 6 6 H 1.48502 * 109.47541 * 145.30725 * 3 2 1 7 7 C 1.38987 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00161 * 325.24236 * 7 2 1 9 9 N 1.36821 * 120.00171 * 145.24875 * 7 2 1 10 10 C 1.34779 * 120.00425 * 148.81306 * 9 7 2 11 11 O 1.21835 * 120.00334 * 185.97838 * 10 9 7 12 12 C 1.41276 * 119.99733 * 5.98364 * 10 9 7 13 13 C 1.35746 * 120.00005 * 186.07737 * 12 10 9 14 14 C 1.41630 * 120.00328 * 9.73176 * 13 12 10 15 15 C 1.37156 * 126.19692 * 226.72020 * 14 13 12 16 16 N 1.30943 * 113.82792 * 179.84541 * 15 14 13 17 17 C 1.29358 * 117.50537 * 0.45442 * 16 15 14 18 18 S 1.70916 * 110.66185 * 359.74223 * 17 16 15 19 19 C 1.39659 * 119.99955 * 328.81451 * 9 7 2 20 20 C 1.38995 * 120.08099 * 308.46997 * 19 9 7 21 21 C 1.38072 * 119.91682 * 179.97438 * 20 19 9 22 22 C 1.38311 * 120.08440 * 359.97438 * 21 20 19 23 23 C 1.38315 * 120.16291 * 0.27033 * 22 21 20 24 24 C 1.38074 * 120.08080 * 359.49578 * 23 22 21 25 25 H 0.96996 * 119.99619 * 0.02562 * 1 2 3 26 26 H 1.08009 * 119.99990 * 6.06938 * 12 10 9 27 27 H 1.08004 * 120.00069 * 189.73435 * 13 12 10 28 28 H 1.07999 * 123.08702 * 0.02562 * 15 14 13 29 29 H 1.07994 * 124.66991 * 179.76519 * 17 16 15 30 30 H 1.08005 * 120.03965 * 359.95091 * 20 19 9 31 31 H 1.08003 * 119.95552 * 179.97438 * 21 20 19 32 32 H 1.08002 * 119.92017 * 180.02562 * 22 21 20 33 33 H 1.07997 * 119.96029 * 179.72076 * 23 22 21 34 34 H 1.08000 * 120.04356 * 180.22926 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 2.5946 1.9890 -1.3954 5 1 1.3992 2.6792 0.5985 6 1 3.4923 1.4708 0.7969 7 6 2.0087 -1.2037 0.0005 8 1 1.6132 -2.0554 0.5342 9 7 3.1939 -1.3098 -0.6748 10 6 4.1531 -2.1434 -0.2260 11 8 5.2471 -2.1582 -0.7620 12 6 3.8899 -3.0002 0.8661 13 6 4.8895 -3.7495 1.3972 14 6 6.2304 -3.5253 0.9999 15 6 7.1412 -4.4870 0.6438 16 7 8.3146 -4.0082 0.3146 17 6 8.4739 -2.7257 0.3713 18 16 7.0327 -1.9610 0.8807 19 6 3.4097 -0.5542 -1.8293 20 6 2.4757 -0.5722 -2.8585 21 6 2.6923 0.1765 -3.9982 22 6 3.8367 0.9442 -4.1163 23 6 4.7708 0.9607 -3.0964 24 6 4.5588 0.2184 -1.9517 25 1 -0.4849 0.8400 -0.0004 26 1 2.8934 -3.0590 1.2785 27 1 4.6624 -4.5166 2.1228 28 1 6.9108 -5.5421 0.6329 29 1 9.3910 -2.2093 0.1297 30 1 1.5818 -1.1715 -2.7670 31 1 1.9671 0.1626 -4.7985 32 1 4.0032 1.5292 -5.0088 33 1 5.6654 1.5579 -3.1940 34 1 5.2868 0.2346 -1.1541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493855152.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:46:59 Heat of formation + Delta-G solvation = 92.048603 kcal Electronic energy + Delta-G solvation = -21738.120613 eV Core-core repulsion = 18536.846861 eV Total energy + Delta-G solvation = -3201.273752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05970 -38.95743 -37.82138 -35.23848 -33.55071 -32.32378 -30.26048 -29.77792 -28.39279 -25.58864 -25.01730 -23.17906 -21.89893 -20.99442 -19.89027 -19.10120 -18.08412 -17.19603 -16.45253 -15.91949 -15.43592 -15.09193 -14.70965 -14.24644 -13.87954 -13.66775 -13.54851 -13.41789 -12.92097 -12.81026 -12.73637 -12.58387 -12.26025 -11.83983 -11.19049 -11.16549 -10.98469 -10.84951 -10.60529 -10.27782 -9.81348 -9.53049 -9.17813 -8.90370 -8.60673 -8.27553 -8.16282 -7.67623 -7.49950 -6.84711 -4.21105 0.63666 1.81798 1.97973 2.06096 2.23145 2.47488 3.07544 3.18842 3.25122 3.33771 4.02673 4.04645 4.22242 4.39992 4.80426 4.90865 5.48522 5.49004 5.54153 5.60039 5.64486 5.72123 5.83625 6.09331 6.13679 6.21672 6.34518 6.56618 6.64074 6.65276 6.83100 6.94118 7.10567 7.12974 7.23907 7.57002 7.78368 8.07219 8.19868 8.65989 9.06273 9.40998 10.22751 Molecular weight = 300.07amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.006333 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.190175 B = 4420.082888 C = 5144.854371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.093 3.907 3 Si 0.844 3.156 4 H -0.252 1.252 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.372 4.372 8 H 0.115 0.885 9 N -0.392 5.392 10 C 0.480 3.520 11 O -0.569 6.569 12 C -0.147 4.147 13 C -0.050 4.050 14 C -0.178 4.178 15 C 0.031 3.969 16 N -0.481 5.481 17 C -0.041 4.041 18 S 0.236 5.764 19 C 0.160 3.840 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.149 4.149 23 C -0.115 4.115 24 C -0.124 4.124 25 H 0.281 0.719 26 H 0.142 0.858 27 H 0.137 0.863 28 H 0.168 0.832 29 H 0.185 0.815 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -0.619 0.418 6.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.121 4.121 3 Si 0.667 3.333 4 H -0.176 1.176 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.497 4.497 8 H 0.132 0.868 9 N -0.103 5.103 10 C 0.276 3.724 11 O -0.456 6.456 12 C -0.171 4.171 13 C -0.073 4.073 14 C -0.301 4.301 15 C -0.125 4.125 16 N -0.195 5.195 17 C -0.333 4.333 18 S 0.494 5.506 19 C 0.066 3.934 20 C -0.136 4.136 21 C -0.134 4.134 22 C -0.168 4.168 23 C -0.134 4.134 24 C -0.144 4.144 25 H 0.091 0.909 26 H 0.160 0.840 27 H 0.154 0.846 28 H 0.185 0.815 29 H 0.201 0.799 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.498 0.248 0.181 7.504 hybrid contribution -0.245 0.028 -0.025 0.248 sum 7.253 0.276 0.156 7.260 Atomic orbital electron populations 1.69930 1.06865 1.29278 1.38746 1.25179 0.94613 0.98672 0.93614 0.87264 0.81366 0.83643 0.81041 1.17597 1.20942 1.18560 1.19046 0.96661 0.99594 1.34356 0.86782 1.41502 1.14833 1.35209 1.18722 1.17276 0.83602 0.85042 0.86515 1.90852 1.21510 1.72811 1.60425 1.22430 1.00775 0.96936 0.96949 1.20385 0.89018 0.98560 0.99345 1.23717 0.99765 0.96277 1.10336 1.22205 0.87363 1.00112 1.02815 1.65869 1.23542 1.12547 1.17554 1.28222 1.03443 0.93403 1.08223 1.83651 1.01297 1.09648 1.55974 1.17845 0.94534 0.93534 0.87470 1.21133 1.00157 1.00340 0.91982 1.20884 0.97426 0.97580 0.97491 1.20917 0.95346 1.01479 0.99045 1.20843 0.98970 0.99618 0.93924 1.21082 0.98055 0.96510 0.98779 0.90885 0.84044 0.84561 0.81540 0.79851 0.85302 0.86567 0.86987 0.86767 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.81 13.95 55.50 0.77 -20.03 16 2 C 0.09 2.30 4.73 -17.47 -0.08 2.22 16 3 Si 0.84 19.54 25.42 -169.99 -4.32 15.22 16 4 H -0.25 -5.86 6.60 56.52 0.37 -5.49 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.37 -9.01 8.69 -15.05 -0.13 -9.14 16 8 H 0.11 2.77 6.37 -52.48 -0.33 2.44 16 9 N -0.39 -9.09 2.43 -62.06 -0.15 -9.24 16 10 C 0.48 10.52 6.83 -15.10 -0.10 10.42 16 11 O -0.57 -12.90 10.21 5.07 0.05 -12.84 16 12 C -0.15 -2.73 9.17 -39.32 -0.36 -3.09 16 13 C -0.05 -0.80 9.93 -39.18 -0.39 -1.19 16 14 C -0.18 -3.07 4.57 -38.68 -0.18 -3.25 16 15 C 0.03 0.52 11.39 -18.32 -0.21 0.31 16 16 N -0.48 -8.38 10.50 -15.04 -0.16 -8.53 16 17 C -0.04 -0.64 12.20 51.72 0.63 -0.01 16 18 S 0.24 3.99 19.72 -107.50 -2.12 1.87 16 19 C 0.16 3.62 2.79 -83.73 -0.23 3.38 16 20 C -0.12 -2.48 8.82 -39.36 -0.35 -2.83 16 21 C -0.12 -2.11 10.04 -39.62 -0.40 -2.51 16 22 C -0.15 -2.59 10.04 -39.53 -0.40 -2.98 16 23 C -0.11 -2.12 10.04 -39.61 -0.40 -2.51 16 24 C -0.12 -2.64 6.93 -39.36 -0.27 -2.91 16 25 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.14 2.50 6.17 -52.48 -0.32 2.18 16 27 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 28 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.13 2.82 7.96 -52.48 -0.42 2.40 16 31 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.12 2.59 7.43 -52.49 -0.39 2.20 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -28.61 303.82 -7.38 -35.98 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.17 Total: 7.10 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.87 Total: -14.10 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.47 Total: -37.81 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.05 Total: -12.84 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.32 Total: 15.22 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.12 Total: 1.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.61 -7.38 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493855152.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.033 kcal (2) G-P(sol) polarization free energy of solvation -28.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds